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Lipopolysaccaride4 h (leaf)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 1.00  
1.00  
2 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.85  
0.73  
3 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 0.85  
0.90  
4 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.83  
0.83  
5 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.83  
0.81  
6 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.82  
0.75  
7 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.80  
0.83  
8 DC3000 hrcC 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 hrcC-
harvested after 2h /
leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.80  
0.77  
9 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.80  
0.82  
10 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.75  
0.49  
11 ARR22-ox (t-zeatin 3 h) ARR22-ox 20 µM t-zeatin /
seedling		 Col-0 (t-zeatin 3 h) Cytokinin treatment of seedlings 0.72  
0.47  
12 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.70  
0.54  
13 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.70  
0.42  
14 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.70  
0.58  
15 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.69  
0.72  
16 Mutant cry1 (High Light) cry1 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk -0.66  
-0.30  
17 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.65  
0.56  
18 Cold Stress 24 h (shoot) Col-0 cold stress (4˚) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.64  
0.45  
19 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.64  
0.68  
20 Wounding Stress3 h (shoot) Col-0 wounding (punctured with
pins at beginning of
treatment) / shoots		 Stress mock 3 h (shoot) Stress treatments 0.63  
0.57  
21 Brz220 12 h Col-0 10 µM BRZ220 /
seedling		 Mock 12 h Effect of brassinosteroid inhibitors on seedlings 0.62  
0.39  
22 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.62  
0.62  
23 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.60  
0.52  
24 Salt Stress 24 h (root) Col-0 salt stress (150 mM
NaCl) / roots		 Stress mock 24 h (root) Stress treatments 0.56  
0.40  
25 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments 0.56  
0.48  
26 IAA 3 h Col-0 1 µM IAA / seedling Mock 3 h Basic hormone treatment of seedlings 0.54  
0.08  
27 Uniconazole 12 h Col-0 10 µM uniconazole /
seedling		 Mock 12 h Effect of GA inhibitors on seedlings 0.54  
0.36  
28 Rosette leaf No12 gl1-T no treatment / rosette
leaf #12		 Control for tissue data Developmental series; organs / tissues at different ages -0.54  
-0.35  
29 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.54  
0.47  
30 ARR21C-ox ARR21C-ox no treatment / seedling Col-0 ARR21C overexpression 0.53  
0.25  
31 P.syringae vir 4 h (leaf) Col-0 P.syringae vir 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.53  
0.22  
32 Red Light 45min Col-0 continuous red light /
seedlings		 White Light 45min Light treatments -0.52  
0.07  
33 Shoot apex transition (before bolting) Col-0 no treatment / shoot
apex, transition (before
bolting)		 Control for tissue data Developmental series; organs / tissues at different ages -0.52  
-0.26  
34 Mature pollen Col-0 no treatment / mature
pollen		 Control for tissue data Developmental series; organs / tissues at different ages 0.52  
0.03  
35 Mutant coi1(leaf) coi1 no treatment / leaves Col-0 (leaf) GEO bulk -0.52  
-0.34  
36 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk 0.51  
0.45  
37 PNO8 3 h Col-0 1 µM PNO8 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.43  
0.53  
38 Mutant arf2 (etiol) arf2 mock / etiol seedling Col (etiol) GEO bulk 0.35  
0.52  
39 Norflurazon Col-0 5 µM Norflurazon /
seedling		 Col-0 GEO bulk 0.25  
0.51  
40 B.cinerea 18 h infection CS6673 B. cinerea infection /
leaf		 Mock 18 h Botrytis cinerea infection 0.20  
0.59  
41 2,4,6-trichlorophenoxyacetic acid 3 h Col-0 10 µM 2,4,6T /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.03  
0.57  
42 Imbibed 1 h (seed) Col-0 imbibed seeds (water) /
seeds		 Dry seed Time course of early seed germination 0.03  
0.51