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Red Light 45min
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Red Light 45min Col-0 continuous red light /
seedlings		 White Light 45min Light treatments 1.00  
1.00  
2 IAA 3 h Col-0 1 µM IAA / seedling Mock 3 h Basic hormone treatment of seedlings 0.72  
0.40  
3 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments 0.70  
0.71  
4 Mutant iaa5_6_19(IAA) iaa5 iaa6 iaa19 5 µM IAA / seedling Col (IAA) GEO bulk 0.65  
0.32  
5 Petals stage15 Col-0 no treatment / flowers
stage 15, petals		 Control for tissue data Developmental series; organs / tissues at different ages 0.64  
0.02  
6 Shoot apex vegetative &Young leaves Col-0 no treatment / shoot
apex, vegetative and
young leaves		 Control for tissue data Developmental series; organs / tissues at different ages -0.63  
-0.06  
7 Mutant nph4-1_arf19-1 (IAA) nph4-1 arf19-1 5 µM IAA / seedling Col (IAA) GEO bulk -0.63  
-0.16  
8 Mutant iaa17-6 (IAA) iaa17-6 5 µM IAA / seedling Col (IAA) GEO bulk 0.62  
0.01  
9 Shoot apex transition (before bolting) Col-0 no treatment / shoot
apex, transition (before
bolting)		 Control for tissue data Developmental series; organs / tissues at different ages -0.61  
-0.09  
10 Mutant sav3-2 (SH) sav3-2 Low R:FR light /
seedling		 Col-0 (SH) GEO bulk -0.61  
-0.55  
11 Brz220 3 h Col-0 10 µM BRZ220 /
seedling		 Mock 3 h Effect of brassinosteroid inhibitors on seedlings -0.60  
-0.14  
12 Mutant sav3-2 (WL) sav3-2 Continuous white light /
seedling		 Col-0 (WL) GEO bulk -0.60  
-0.41  
13 FarRed Light 4 h Col-0 continuous far red light
/ seedlings		 White Light 4 h Light treatments -0.58  
-0.69  
14 Shoot apex vegetative Col-0 no treatment / shoot
apex, vegetative		 Control for tissue data Developmental series; organs / tissues at different ages -0.58  
-0.08  
15 Shoot apex inflorescence (after bolting) Col-0 no treatment / shoot
apex, inflorescenze
(after bolting)		 Control for tissue data Developmental series; organs / tissues at different ages -0.58  
-0.10  
16 Mutant lfy-12(flower) lfy-12 no treatment / flower
stage 12; shoot
characteristics; most
organs leaf-like		 Flowers stage12 Developmental series; organs / tissues at different ages -0.58  
0.11  
17 Stamen stage15 Col-0 no treatment / flowers
stage 15 stamen		 Control for tissue data Developmental series; organs / tissues at different ages 0.57  
-0.07  
18 Flower (stage12) Col-0 no treatment / flower
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.57  
-0.13  
19 AVG 3 h Col-0 10 µM AVG / seedling Mock 3 h Effect of ethylene inhibitors on seedlings -0.56  
-0.13  
20 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk -0.55  
-0.29  
21 IAA 0.5 h Col-0 1 µM IAA / seedling Mock 0.5 h Basic hormone treatment of seedlings 0.54  
0.44  
22 Benzyl adenin15 min Col 5 µM 6-Benzyl
adenine / seedling		 Mock 15 min GEO bulk 0.54  
0.01  
23 IAA 1 h Col-0 1 µM IAA / seedling Mock 1 h Basic hormone treatment of seedlings 0.53  
0.57  
24 ARR22-ox ARR22-ox no treatment / seedling Col-0 Cytokinin treatment of seedlings -0.53  
-0.10  
25 Mutant hy5 (High Light) hy5 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk 0.51  
0.04  
26 Blue Light 4 h Col-0 continuous Blue Light /
seedlings		 White Light 4 h Light treatments -0.50  
-0.72  
27 Mutant nph4-1 (IAA) nph4-1 5 µM IAA / seedling Col (IAA) GEO bulk -0.50  
-0.02  
28 Dark 40 min pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 40 min. of
darkness / seedlings		 Dark 45 min Light treatments -0.37  
-0.51  
29 Red Light 4 h Col-0 continuous Red Light /
seedlings		 White Light 4 h Light treatments -0.13  
0.62  
30 -Sulfate 2 h Col-0 0 µM sulfate / root Mock 2 h (1500uM sulfate) Response to sulfate limitation -0.09  
0.55  
31 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.07  
-0.52