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Shoot apex transition (before bolting)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Shoot apex transition (before bolting) Col-0 no treatment / shoot
apex, transition (before
bolting)		 Control for tissue data Developmental series; organs / tissues at different ages 1.00  
1.00  
2 Shoot apex inflorescence (after bolting) Col-0 no treatment / shoot
apex, inflorescenze
(after bolting)		 Control for tissue data Developmental series; organs / tissues at different ages 0.91  
0.91  
3 Shoot apex vegetative Col-0 no treatment / shoot
apex, vegetative		 Control for tissue data Developmental series; organs / tissues at different ages 0.79  
0.82  
4 Flower (stage12) Col-0 no treatment / flower
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages 0.78  
0.60  
5 Rosette leaf No2 Col-0 no treatment / rosette
leaf #4		 Control for tissue data Developmental series; organs / tissues at different ages -0.71  
-0.68  
6 Cotyledons Col-0 no treatment /
cotyledons		 Control for tissue data Developmental series; organs / tissues at different ages -0.69  
-0.68  
7 Distal half (leaf7) Col-0 no treatment / leaf 7,
distal half		 Control for tissue data Developmental series; organs / tissues at different ages -0.69  
-0.69  
8 Shoot apex vegetative &Young leaves Col-0 no treatment / shoot
apex, vegetative and
young leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.68  
0.68  
9 Mutant ap2-6(flower) ap2-6 no treatment / flower
stage 12; no sepals or
petals 		Flowers stage12 Developmental series; organs / tissues at different ages 0.68  
0.52  
10 Carpels stage15 Col-0 no treatment / flowers
stage 15, carpels		 Control for tissue data Developmental series; organs / tissues at different ages 0.66  
0.50  
11 Cauline leaves Col-0 no treatment / cauline
leaves		 Control for tissue data Developmental series; organs / tissues at different ages -0.63  
-0.67  
12 Proximalhalf (leaf7) Col-0 no treatment / leaf 7,
proximal half		 Control for tissue data Developmental series; organs / tissues at different ages -0.62  
-0.61  
13 Mutant lfy-12(flower) lfy-12 no treatment / flower
stage 12; shoot
characteristics; most
organs leaf-like		 Flowers stage12 Developmental series; organs / tissues at different ages 0.58  
0.47  
14 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages -0.55  
-0.53  
15 Salt Stress 24 h (root) Col-0 salt stress (150 mM
NaCl) / roots		 Stress mock 24 h (root) Stress treatments -0.51  
-0.40  
16 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages -0.51  
-0.48  
17 Mutant ap1-15(flower) ap1-15 no treatment / flower
stage 12; sepals
replaced by leaf-like
organs, petals mostly
lacking, 2˚C
flowers 		Flowers stage12 Developmental series; organs / tissues at different ages 0.50  
0.34  
18 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments -0.35  
-0.69  
19 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments -0.26  
-0.52  
20 t-zeatin 3 h Col-0 1 µM t-zeatin /
seedling		 Mock 3 h Basic hormone treatment of seedlings 0.17  
0.56  
21 Red Light 45min Col-0 continuous red light /
seedlings		 White Light 45min Light treatments -0.09  
-0.61  
22 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection -0.09  
-0.58  
23 Mutant iaa5_6_19 iaa5 iaa6 iaa19 mock / seedling Col GEO bulk -0.09  
0.51  
24 Norflurazon Col-0 5 µM Norflurazon /
seedling		 Col-0 GEO bulk 0.08  
0.61