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GST 4 h (leaf)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 1.00  
1.00  
2 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.90  
0.85  
3 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.85  
0.78  
4 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.83  
0.82  
5 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.82  
0.82  
6 ARR22-ox (t-zeatin 3 h) ARR22-ox 20 µM t-zeatin /
seedling		 Col-0 (t-zeatin 3 h) Cytokinin treatment of seedlings 0.78  
0.53  
7 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.75  
0.63  
8 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.75  
0.65  
9 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.75  
0.74  
10 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.74  
0.59  
11 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.73  
0.49  
12 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.72  
0.63  
13 DC3000 hrcC 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 hrcC-
harvested after 2h /
leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.72  
0.78  
14 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.72  
0.72  
15 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.71  
0.83  
16 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.71  
0.53  
17 Shoot apex transition (before bolting) Col-0 no treatment / shoot
apex, transition (before
bolting)		 Control for tissue data Developmental series; organs / tissues at different ages -0.69  
-0.35  
18 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.67  
0.50  
19 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.67  
0.41  
20 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.66  
0.58  
21 Wounding Stress3 h (shoot) Col-0 wounding (punctured with
pins at beginning of
treatment) / shoots		 Stress mock 3 h (shoot) Stress treatments 0.66  
0.48  
22 Shoot apex inflorescence (after bolting) Col-0 no treatment / shoot
apex, inflorescenze
(after bolting)		 Control for tissue data Developmental series; organs / tissues at different ages -0.66  
-0.32  
23 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.66  
0.50  
24 Rosette leaf No12 gl1-T no treatment / rosette
leaf #12		 Control for tissue data Developmental series; organs / tissues at different ages -0.65  
-0.37  
25 Mutant coi1(leaf) coi1 no treatment / leaves Col-0 (leaf) GEO bulk -0.63  
-0.55  
26 Shoot apex vegetative Col-0 no treatment / shoot
apex, vegetative		 Control for tissue data Developmental series; organs / tissues at different ages -0.62  
-0.36  
27 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk 0.62  
0.46  
28 Flower (stage12) Col-0 no treatment / flower
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.61  
-0.39  
29 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.61  
0.39  
30 IAA 3 h Col-0 1 µM IAA / seedling Mock 3 h Basic hormone treatment of seedlings 0.60  
0.32  
31 Salt Stress 24 h (root) Col-0 salt stress (150 mM
NaCl) / roots		 Stress mock 24 h (root) Stress treatments 0.60  
0.48  
32 Cauline leaves Col-0 no treatment / cauline
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.59  
0.47  
33 Cold Stress 24 h (shoot) Col-0 cold stress (4˚) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.58  
0.41  
34 P.syringae vir 4 h (leaf) Col-0 P.syringae vir 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.58  
0.09  
35 Mutant NahG(leaf) Nahg no treatment / leaves Col-0 (leaf) GEO bulk -0.58  
-0.17  
36 ACC 3 h Col-0 10 µM ACC / seedling Mock 3 h Basic hormone treatment of seedlings 0.56  
0.31  
37 Mutant arf2-6 (IAA) arf2-6 5 µM IAA / seedling Col (IAA) GEO bulk -0.56  
-0.04  
38 Mutant arf2 (etiol) arf2 mock / etiol seedling Col (etiol) GEO bulk 0.55  
0.54  
39 Uniconazole 12 h Col-0 10 µM uniconazole /
seedling		 Mock 12 h Effect of GA inhibitors on seedlings 0.54  
0.38  
40 Rosette leaf No2 Col-0 no treatment / rosette
leaf #4		 Control for tissue data Developmental series; organs / tissues at different ages 0.54  
0.44  
41 Carpels stage15 Col-0 no treatment / flowers
stage 15, carpels		 Control for tissue data Developmental series; organs / tissues at different ages -0.53  
-0.23  
42 Dark 4 h pls RedLight 1min Col-0 1 min. red light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments -0.51  
-0.39  
43 Shoot apex vegetative &Young leaves Col-0 no treatment / shoot
apex, vegetative and
young leaves		 Control for tissue data Developmental series; organs / tissues at different ages -0.51  
-0.32  
44 Petals stage15 Col-0 no treatment / flowers
stage 15, petals		 Control for tissue data Developmental series; organs / tissues at different ages 0.51  
0.22  
45 Mutant arf2-6 arf2-6 mock / seedling Col GEO bulk -0.51  
-0.55  
46 Mature roots Col-0 no treatment / roots Control for tissue data Developmental series; organs / tissues at different ages 0.50  
0.18  
47 Seeds stage3 with siliques Col-0 no treatment / siliques,
w/ seeds stage 3 (long
days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.50  
-0.29  
48 Mutant ap2-6(flower) ap2-6 no treatment / flower
stage 12; no sepals or
petals 		Flowers stage12 Developmental series; organs / tissues at different ages -0.50  
-0.13  
49 PNO8 3 h Col-0 1 µM PNO8 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.48  
0.52  
50 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments 0.42  
0.61  
51 Norflurazon Col-0 5 µM Norflurazon /
seedling		 Col-0 GEO bulk 0.40  
0.54  
52 2,3,5-Triiodobenzoic acid3 h Col-0 10 µM TIBA /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.38  
0.50  
53 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk 0.29  
0.57  
54 Mutant ein2(leaf) ein2 no treatment / leaves Col-0 (leaf) GEO bulk -0.25  
-0.66  
55 Benzyl adenin15 min Col 5 µM 6-Benzyl
adenine / seedling		 Mock 15 min GEO bulk 0.19  
0.53