Score |
Experiment |
Genotype |
Treatment / Tissue |
Control Experiment |
Experimental Category |
Correlation |
Gene list |
1 |
P. infestans 6 h (leaf) |
Col-0 |
P. infestans 6 h (leaf) / leaves |
Mock 6 h (leaf) |
Elicitor treatments |
1.00 
1.00
|
|
2 |
GST NPP1 4 h (leaf) |
Col-0 |
infiltrated with 1 µM GST-NPP1 / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.83 
0.82
|
|
3 |
HairpinZ 4 h (leaf) |
Col-0 |
infiltrated with 10 µM HrpZ / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.82 
0.80
|
|
4 |
AgNO3 3 h |
Col-0 |
10 µM AgNO3 / seedling |
Mock 3 h |
Effect of ethylene inhibitors on seedlings |
0.81 
0.69
|
|
5 |
B.cinerea 18 h infection |
CS6673 |
B. cinerea infection / leaf |
Mock 18 h |
Botrytis cinerea infection |
0.81 
0.91
|
|
6 |
ARR22-ox (t-zeatin 3 h) |
ARR22-ox |
20 µM t-zeatin / seedling |
Col-0 (t-zeatin 3 h) |
Cytokinin treatment of seedlings |
0.77 
0.60
|
|
7 |
Osmotic Stress 24 h (shoot) |
Col-0 |
osmotic stress (300 mM mannitol) / shoots |
Stress mock 24 h (shoot) |
Stress treatments |
0.77 
0.65
|
|
8 |
Flagellin 4 h (leaf) |
Col-0 |
infiltrated with 1 µM Flg22 / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.77 
0.73
|
|
9 |
Phaseolicola 2 h (leaf) |
Col-0 |
infiltrated with 108 cfu/ml P. syringae pv. phaseolicola harvested after 2h / leaves |
Mock 2 h (leaf) |
Pseudomonas syringae pv. tomato or pv. phaseolicola infection |
0.76 
0.83
|
|
10 |
Mutant siz1-3 (Drought) |
siz1-3 |
Drought / not identified |
Col-0 (Drought) |
GEO bulk |
0.73 
0.62
|
|
11 |
DC3000 2 h (leaf) |
Col-0 |
infiltrated with 108 cfu/ml P. syringae pv. tomato DC3000 harvested after 2h / leaves |
Mock 2 h (leaf) |
Pseudomonas syringae pv. tomato or pv. phaseolicola infection |
0.71 
0.72
|
|
12 |
K starvation (shoot) |
ws-2 |
K starvation / shoot |
Ws (shoot) |
GEO bulk |
0.70 
0.66
|
|
13 |
Lipopolysaccaride4 h (leaf) |
Col-0 |
infiltrated with 100 µg/ml LPS / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.68 
0.64
|
|
14 |
Senescing leaf |
Col-0 |
no treatment / senescing leaves |
Control for tissue data |
Developmental series; organs / tissues at different ages |
0.68 
0.56
|
|
15 |
Sepals stage15 |
Col-0 |
no treatment / flowers stage 15, sepals |
Control for tissue data |
Developmental series; organs / tissues at different ages |
0.68 
0.56
|
|
16 |
Mutant coi1(leaf) |
coi1 |
no treatment / leaves |
Col-0 (leaf) |
GEO bulk |
-0.68 
-0.78
|
|
17 |
UV Stress 24 h (shoot) |
Col-0 |
UV-B stress (15 min 1.8 W/m2 Philips TL40W/12; thereafter recovery) / shoots |
Stress mock 24 h (shoot) |
Stress treatments |
0.66 
0.70
|
|
18 |
AvrRpm1 2 h (leaf) |
Col-0 |
infiltrated with 108 cfu/ml P. syringae pv. tomato avrRpm1 harvested after 2h / leaves |
Mock 2 h (leaf) |
Pseudomonas syringae pv. tomato or pv. phaseolicola infection |
0.66 
0.74
|
|
19 |
P.syringae AvrRpt2 4 h (leaf) |
Col-0 |
P.syringae avrRpt2 4 h (leaf) / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.66 
0.71
|
|
20 |
GST 4 h (leaf) |
Col-0 |
infiltrated with 1µM GST / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.65 
0.75
|
|
21 |
Mutant siz1-3 |
siz1-3 |
mock / not identified |
Col-0 |
GEO bulk |
0.64 
0.62
|
|
22 |
Mutant gh3.5-1D (AvrRpt2) |
gh3.5-1D |
Pst DC3000(avrRpt2) / leaves |
Col-0 (AvrRpt2) |
GEO bulk |
0.64 
0.67
|
|
23 |
2,3,5-Triiodobenzoic acid3 h |
Col-0 |
10 µM TIBA / seedling |
Mock 3 h |
Effect of auxin inhibitors on seedlings |
0.62 
0.50
|
|
24 |
Phytoprostane A1 4 h |
Col |
75 µM phytoprostane A1 / seedling |
Col-0 |
GEO bulk |
0.59 
0.38
|
|
25 |
Cycloheximide 3 h |
Col-0 |
10 µM CHX / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.58 
0.64
|
|
26 |
OPDA 4 h |
Col |
75 µM OPDA / seedling |
Col-0 |
GEO bulk |
0.58 
0.44
|
|
27 |
Wounding Stress3 h (shoot) |
Col-0 |
wounding (punctured with pins at beginning of treatment) / shoots |
Stress mock 3 h (shoot) |
Stress treatments |
0.56 
0.52
|
|
28 |
DC3000 hrcC 2 h (leaf) |
Col-0 |
infiltrated with 108 cfu/ml P. syringae pv. tomato DC3000 hrcC- harvested after 2h / leaves |
Mock 2 h (leaf) |
Pseudomonas syringae pv. tomato or pv. phaseolicola infection |
0.56 
0.65
|
|
29 |
Mutant arf2 (etiol) |
arf2 |
mock / etiol seedling |
Col (etiol) |
GEO bulk |
0.56 
0.54
|
|
30 |
Salt Stress 24 h (root) |
Col-0 |
salt stress (150 mM NaCl) / roots |
Stress mock 24 h (root) |
Stress treatments |
0.55 
0.45
|
|
31 |
Mature roots |
Col-0 |
no treatment / roots |
Control for tissue data |
Developmental series; organs / tissues at different ages |
0.55 
0.54
|
|
32 |
Mature pollen |
Col-0 |
no treatment / mature pollen |
Control for tissue data |
Developmental series; organs / tissues at different ages |
0.54 
0.39
|
|
33 |
Salicylic Acid 3 h |
Col-0 |
10µM salicylic acid / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.53 
0.51
|
|
34 |
Rosette leaf No12 |
gl1-T |
no treatment / rosette leaf #12 |
Control for tissue data |
Developmental series; organs / tissues at different ages |
-0.53 
-0.41
|
|
35 |
Pedicels stage15 |
Col-0 |
no treatment / flowers stage 15, pedicels |
Control for tissue data |
Developmental series; organs / tissues at different ages |
-0.53 
-0.24
|
|
36 |
Methyl Jasmonate 1 h |
Col-0 |
10 µM Metyl Jasmonate / seedling |
Mock 1 h |
Basic hormone treatment of seedlings |
0.51 
0.69
|
|
37 |
Mutant ein2(leaf) |
ein2 |
no treatment / leaves |
Col-0 (leaf) |
GEO bulk |
-0.50 
-0.57
|
|
38 |
Mutant iaa17-6 |
iaa17-6 |
mock / seedling |
Col |
GEO bulk |
0.48 
0.52
|
|
39 |
Salt Stress 24 h (shoot) |
Col-0 |
salt stress (150 mM NaCl) / shoots |
Stress mock 24 h (shoot) |
Stress treatments |
0.46 
0.51
|
|
40 |
Mutant arf2-6 |
arf2-6 |
mock / seedling |
Col |
GEO bulk |
-0.46 
-0.50
|
|
41 |
E.orontii Infection 3 day |
Col-0 |
E.orontii Infection 3 day / leaves |
Uninfection 3 day |
Elicitor treatments |
0.38 
0.57
|
|
42 |
UV Stress 24 h (root) |
Col-0 |
UV-B stress (15 min 1.8 W/m2 Philips TL40W/12; thereafter recovery) / roots |
Stress mock 24 h (root) |
Stress treatments |
0.36 
0.50
|
|
43 |
Norflurazon |
Col-0 |
5 µM Norflurazon / seedling |
Col-0 |
GEO bulk |
0.36 
0.58
|
|
44 |
Estradiol4 days |
Col |
Estradiol 10 µM / seedling |
Col |
GEO bulk |
0.17 
0.54
|
|
45 |
Methyl Jasmonate 0.5 h |
Col-0 |
10 µM MJ / seedling |
Mock 0.5 h |
Basic hormone treatment of seedlings |
0.14 
0.72
|
|