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Salicylic Acid 3 h
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Salicylic Acid 3 h Col-0 10µM salicylic acid
/ seedlings		 Mock 3 h Effect of other inhibitors on seedlings 1.00  
1.00  
2 Mutant NahG(leaf) Nahg no treatment / leaves Col-0 (leaf) GEO bulk -0.78  
-0.74  
3 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.76  
0.35  
4 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk 0.75  
0.56  
5 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.74  
0.58  
6 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.74  
0.50  
7 Mutant sav3-2 (WL) sav3-2 Continuous white light /
seedling		 Col-0 (WL) GEO bulk 0.69  
0.63  
8 P-chlorophenoxy- isobutyric acid 3 h Col-0 10 µM PCIB /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.67  
0.85  
9 Mutant tga2_5_6 tga2 5 6 mock / seedling Col-0 GEO bulk 0.65  
0.32  
10 Mutant ga1-5 ga1-5 no treatment / seedling Ler-1 Comparison of plant hormone related mutant -0.61  
-0.51  
11 Mutant ag-12(flower) ag-12 no treatment / flower
stage 12; no stamens or
carpels 		Flowers stage12 Developmental series; organs / tissues at different ages 0.61  
0.32  
12 Mutant ufo-1(flower) ufo-1 no treatment / flower
stage 12; filamentous
organs in whorls two and
three 		Flowers stage12 Developmental series; organs / tissues at different ages 0.61  
0.39  
13 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.60  
0.75  
14 ARR22-ox ARR22-ox no treatment / seedling Col-0 Cytokinin treatment of seedlings -0.60  
0.01  
15 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.60  
0.25  
16 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.60  
0.21  
17 Prohexadione 12 h Col-0 10 µM prohexadione /
seedling		 Mock 12 h Effect of GA inhibitors on seedlings 0.59  
0.20  
18 Rosette leaf No2 Col-0 no treatment / rosette
leaf #4		 Control for tissue data Developmental series; organs / tissues at different ages 0.59  
0.22  
19 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.57  
0.50  
20 Cauline leaves Col-0 no treatment / cauline
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.57  
0.32  
21 Flowers stage15 Col-0 no treatment / flowers
stage 15		 Control for tissue data Developmental series; organs / tissues at different ages 0.57  
-0.02  
22 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.56  
0.47  
23 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.55  
0.40  
24 Mutant sav3-2 (SH) sav3-2 Low R:FR light /
seedling		 Col-0 (SH) GEO bulk 0.55  
0.64  
25 Prohexadione 3 h Col-0 10 µM prohexadione /
seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.53  
0.56  
26 Expanding leaf Col-0 no treatment / leaves
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.53  
-0.24  
27 2,3,5-Triiodobenzoic acid3 h Col-0 10 µM TIBA /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.52  
0.82  
28 Oxidative Stress 3 h (shoot) Col-0 oxidative stress (10
µM methyl viologen)
/ shoots		 Stress mock 3 h (shoot) Stress treatments 0.52  
-0.15  
29 Distal half (leaf7) Col-0 no treatment / leaf 7,
distal half		 Control for tissue data Developmental series; organs / tissues at different ages 0.52  
0.22  
30 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.51  
0.53  
31 IAA 0.5 h Col-0 1 µM IAA / seedling Mock 0.5 h Basic hormone treatment of seedlings 0.50  
-0.13  
32 Uniconazole 3 h Col-0 10 µM uniconazole /
seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.50  
0.74  
33 2,4,6-trichlorophenoxyacetic acid 3 h Col-0 10 µM 2,4,6T /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.46  
0.89  
34 Propiconazole 3 h Col-0 10 µM propiconazole
/ seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.44  
0.56  
35 Naphthyl- phthalamic acid 3 h Col-0 10 µM NPA / seedling Mock 3 h Effect of auxin inhibitors on seedlings 0.42  
0.60  
36 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments 0.41  
0.51  
37 B.cinerea 18 h infection CS6673 B. cinerea infection /
leaf		 Mock 18 h Botrytis cinerea infection 0.40  
0.53  
38 Paclobutrazol 3 h Col-0 10 µM paclobutrazol
/ seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.38  
0.79  
39 MG132 3 h Col-0 10 µM MG132 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.37  
0.68  
40 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk 0.37  
0.68  
41 Brz220 3 h Col-0 10 µM BRZ220 /
seedling		 Mock 3 h Effect of brassinosteroid inhibitors on seedlings 0.35  
0.75  
42 Ibuprofen 3 h Col-0 10 µM Ibuprofen /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.35  
0.84  
43 Mutant axr3-1 axr3-1 mock / seedling Col GEO bulk 0.33  
0.61  
44 Mutant axr3-1 (IAA) axr3-1 5 µM IAA / seedling Col (IAA) GEO bulk 0.32  
0.72  
45 PNO8 3 h Col-0 1 µM PNO8 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.31  
0.83  
46 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.10  
0.53  
47 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments -0.08  
-0.72  
48 Daminozide3 h Col-0 10 µM Daminozide /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings -0.06  
0.83