Score |
Experiment |
Genotype |
Treatment / Tissue |
Control Experiment |
Experimental Category |
Correlation |
Gene list |
1 |
Mutant sav3-2 (SH) |
sav3-2 |
Low R:FR light / seedling |
Col-0 (SH) |
GEO bulk |
1.00 
1.00
|
|
2 |
Mutant sav3-2 (WL) |
sav3-2 |
Continuous white light / seedling |
Col-0 (WL) |
GEO bulk |
0.83 
0.92
|
|
3 |
IAA 1 h |
Col-0 |
1 µM IAA / seedling |
Mock 1 h |
Basic hormone treatment of seedlings |
-0.76 
-0.73
|
|
4 |
IAA 3 h |
Col-0 |
1 µM IAA / seedling |
Mock 3 h |
Basic hormone treatment of seedlings |
-0.75 
-0.68
|
|
5 |
Mutant nph4-1_arf19-1 (IAA) |
nph4-1 arf19-1 |
5 µM IAA / seedling |
Col (IAA) |
GEO bulk |
0.72 
0.41
|
|
6 |
Mutant hy5 |
hy5 |
Continuous white light / seedling |
Col-0 |
GEO bulk |
-0.72 
-0.38
|
|
7 |
Senescing leaf |
Col-0 |
no treatment / senescing leaves |
Control for tissue data |
Developmental series; organs / tissues at different ages |
0.68 
0.08
|
|
8 |
Mutant siz1-3 |
siz1-3 |
mock / not identified |
Col-0 |
GEO bulk |
0.68 
0.37
|
|
9 |
Mutant NahG(leaf) |
Nahg |
no treatment / leaves |
Col-0 (leaf) |
GEO bulk |
-0.67 
-0.54
|
|
10 |
IAA 0.5 h |
Col-0 |
1 µM IAA / seedling |
Mock 0.5 h |
Basic hormone treatment of seedlings |
-0.64 
-0.56
|
|
11 |
Salicylic Acid 3 h |
Col-0 |
10µM salicylic acid / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.64 
0.55
|
|
12 |
Mutant cry1 |
cry1 |
Continuous white light / seedling |
Col-0 |
GEO bulk |
-0.63 
-0.30
|
|
13 |
Mutant cry1 (High Light) |
cry1 |
high light: 1000 µmol quanta m-2 s-1 / seedling |
Col-0 (High Light) |
GEO bulk |
-0.62 
-0.21
|
|
14 |
UV Stress 24 h (shoot) |
Col-0 |
UV-B stress (15 min 1.8 W/m2 Philips TL40W/12; thereafter recovery) / shoots |
Stress mock 24 h (shoot) |
Stress treatments |
0.61 
0.40
|
|
15 |
Mutant nph4-1 (IAA) |
nph4-1 |
5 µM IAA / seedling |
Col (IAA) |
GEO bulk |
0.61 
0.40
|
|
16 |
Prohexadione 12 h |
Col-0 |
10 µM prohexadione / seedling |
Mock 12 h |
Effect of GA inhibitors on seedlings |
0.60 
0.13
|
|
17 |
FarRed Light 4 h |
Col-0 |
continuous far red light / seedlings |
White Light 4 h |
Light treatments |
0.60 
0.61
|
|
18 |
Brassinolide 1 h (det2) |
det2-1 |
10 nM brassinolide / seedling |
Mock 1 h (det2) |
Basic hormone treatment of seedlings |
-0.59 
-0.39
|
|
19 |
Rosette leaf No12 |
gl1-T |
no treatment / rosette leaf #12 |
Control for tissue data |
Developmental series; organs / tissues at different ages |
0.59 
0.33
|
|
20 |
Mutant arf2-6 (IAA) |
arf2-6 |
5 µM IAA / seedling |
Col (IAA) |
GEO bulk |
-0.59 
0.04
|
|
21 |
Brz220 12 h |
Col-0 |
10 µM BRZ220 / seedling |
Mock 12 h |
Effect of brassinosteroid inhibitors on seedlings |
0.57 
0.29
|
|
22 |
AgNO3 3 h |
Col-0 |
10 µM AgNO3 / seedling |
Mock 3 h |
Effect of ethylene inhibitors on seedlings |
0.56 
0.38
|
|
23 |
Sepals stage15 |
Col-0 |
no treatment / flowers stage 15, sepals |
Control for tissue data |
Developmental series; organs / tissues at different ages |
0.56 
0.04
|
|
24 |
Mutant iaa17-6 |
iaa17-6 |
mock / seedling |
Col |
GEO bulk |
0.56 
0.24
|
|
25 |
FarRed Light 45min |
Col-0 |
continuous far red light / seedlings |
White Light 45min |
Light treatments |
-0.55 
-0.71
|
|
26 |
Red Light 45min |
Col-0 |
continuous red light / seedlings |
White Light 45min |
Light treatments |
-0.55 
-0.61
|
|
27 |
Mutant clv3-7(flower) |
clv3-7 |
no treatment / flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number |
Flowers stage12 |
Developmental series; organs / tissues at different ages |
-0.55 
-0.24
|
|
28 |
Propiconazole 12 h |
Col-0 |
10 µM propiconazole / seedling |
Mock 12 h |
Effect of GA inhibitors on seedlings |
0.53 
0.11
|
|
29 |
E.orontii Infection 6 h |
Col-0 |
E.orontii Infection 6 h / leaves |
Uninfection 6 h |
Elicitor treatments |
-0.53 
0.02
|
|
30 |
Mutant axr3-1 |
axr3-1 |
mock / seedling |
Col |
GEO bulk |
0.53 
0.30
|
|
31 |
Osmotic Stress 24 h (shoot) |
Col-0 |
osmotic stress (300 mM mannitol) / shoots |
Stress mock 24 h (shoot) |
Stress treatments |
0.52 
-0.05
|
|
32 |
Heat Recovery 24 h (shoot) |
Col-0 |
heat stress + 3 h recovery (25˚) / shoots |
Stress mock 24 h (shoot) |
Stress treatments |
0.51 
0.50
|
|
33 |
Mutant iaa5_6_19 |
iaa5 iaa6 iaa19 |
mock / seedling |
Col |
GEO bulk |
0.50 
0.15
|
|
34 |
Mutant siz1-3 (Drought) |
siz1-3 |
Drought / not identified |
Col-0 (Drought) |
GEO bulk |
0.50 
0.17
|
|
35 |
Blue Light 4 h |
Col-0 |
continuous Blue Light / seedlings |
White Light 4 h |
Light treatments |
0.40 
0.50
|
|
36 |
Ibuprofen 3 h |
Col-0 |
10 µM Ibuprofen / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.32 
0.71
|
|
37 |
PNO8 3 h |
Col-0 |
1 µM PNO8 / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.21 
0.55
|
|