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FarRed Light 4 h
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 FarRed Light 4 h Col-0 continuous far red light
/ seedlings		 White Light 4 h Light treatments 1.00  
1.00  
2 Blue Light 4 h Col-0 continuous Blue Light /
seedlings		 White Light 4 h Light treatments 0.92  
0.89  
3 ARR22-ox ARR22-ox no treatment / seedling Col-0 Cytokinin treatment of seedlings 0.78  
0.41  
4 Brz220 3 h Col-0 10 µM BRZ220 /
seedling		 Mock 3 h Effect of brassinosteroid inhibitors on seedlings 0.76  
0.07  
5 Dark 44min pls RedLigh 1min Col-0 1 min. red light pulse
followed by 44 min.
darkness / seedlings		 Dark 45 min Light treatments 0.75  
0.52  
6 Uniconazole 3 h Col-0 10 µM uniconazole /
seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.73  
0.17  
7 Dark 40 min pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 40 min. of
darkness / seedlings		 Dark 45 min Light treatments 0.73  
0.74  
8 Mutant hy5 (High Light) hy5 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk -0.73  
-0.31  
9 Mutant hy5 hy5 Continuous white light /
seedling		 Col-0 GEO bulk -0.73  
-0.29  
10 Dark 40min pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 40
min. of darkness /
seedlings		 Dark 45 min Light treatments 0.72  
0.69  
11 Dark 4 h pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 4 h
of darkness / seedlings		 Dark 4 h Light treatments 0.71  
0.63  
12 Mutant cry1 (High Light) cry1 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk -0.71  
-0.60  
13 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments -0.70  
-0.04  
14 Propiconazole 3 h Col-0 10 µM propiconazole
/ seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.69  
0.44  
15 Red Light 45min Col-0 continuous red light /
seedlings		 White Light 45min Light treatments -0.69  
-0.58  
16 IAA 1 h Col-0 1 µM IAA / seedling Mock 1 h Basic hormone treatment of seedlings -0.68  
-0.50  
17 Mutant axr3-1 axr3-1 mock / seedling Col GEO bulk 0.66  
0.43  
18 Mutant nph4-1_arf19-1 (IAA) nph4-1 arf19-1 5 µM IAA / seedling Col (IAA) GEO bulk 0.65  
0.26  
19 Red Light 1h Col-0 Red Light / seedling Wild type(Dark) GEO bulk 0.65  
0.67  
20 Mutant phyAphyB (Red Light 1h) phyA phyB Red Light / seedling Red Light 1h GEO bulk -0.63  
-0.51  
21 Red Light 4 h Col-0 continuous Red Light /
seedlings		 White Light 4 h Light treatments -0.62  
-0.80  
22 Mutant iaa5_6_19 iaa5 iaa6 iaa19 mock / seedling Col GEO bulk 0.62  
0.24  
23 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk 0.62  
0.33  
24 Ibuprofen 3 h Col-0 10 µM Ibuprofen /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.61  
0.20  
25 Mutant sav3-2 (SH) sav3-2 Low R:FR light /
seedling		 Col-0 (SH) GEO bulk 0.61  
0.60  
26 Mutant phyA (Red Light 1h) phyA Red Light / seedling Red Light 1h GEO bulk -0.61  
-0.63  
27 Brassinolide 3 h (det2) det2-1 10 nM brassinolide /
seedling		 Mock 3 h (det2) Basic hormone treatment of seedlings -0.60  
-0.58  
28 Paclobutrazol 3 h Col-0 10 µM paclobutrazol
/ seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.59  
0.33  
29 Mutant iaa17-6 iaa17-6 mock / seedling Col GEO bulk 0.57  
0.15  
30 MG132 3 h Col-0 10 µM MG132 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.55  
0.35  
31 Petiol (leaf7) Col-0 no treatment / leaf 7,
petiole		 Control for tissue data Developmental series; organs / tissues at different ages -0.55  
-0.14  
32 Mutant nph4-1_arf19-1 nph4-1 arf19-1 mock / seedling Col GEO bulk 0.55  
0.31  
33 IAA 0.5 h Col-0 1 µM IAA / seedling Mock 0.5 h Basic hormone treatment of seedlings -0.54  
-0.51  
34 Naphthyl- phthalamic acid 3 h Col-0 10 µM NPA / seedling Mock 3 h Effect of auxin inhibitors on seedlings 0.54  
0.17  
35 Mutant nph4-1 nph4-1 mock / seedling Col GEO bulk 0.54  
0.04  
36 Brz220 12 h Col-0 10 µM BRZ220 /
seedling		 Mock 12 h Effect of brassinosteroid inhibitors on seedlings 0.53  
0.53  
37 PNO8 3 h Col-0 1 µM PNO8 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.53  
-0.06  
38 Mutant sav3-2 (WL) sav3-2 Continuous white light /
seedling		 Col-0 (WL) GEO bulk 0.53  
0.20  
39 IAA 3 h Col-0 1 µM IAA / seedling Mock 3 h Basic hormone treatment of seedlings -0.51  
-0.37  
40 t-zeatin 1 h Col-0 1 µM t-zeatin /
seedling		 Mock 1 h Basic hormone treatment of seedlings -0.51  
-0.05  
41 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments -0.51  
-0.80  
42 Mutant lfy-12(shoot apex) lfy-12 no treatment / shoot
apex, inflorescence
(after bolting)		 Shoot apex inflorescence (after bolting) Developmental series; organs / tissues at different ages 0.51  
0.32  
43 Mutant arf19-1 arf19-1 mock / seedling Col GEO bulk 0.51  
0.22  
44 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.51  
0.36  
45 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.50  
0.35  
46 ACC 0.5 h Col-0 10 µM ACC / seedling Mock 0.5 h Basic hormone treatment of seedlings -0.26  
-0.51  
47 ABA 1 h Col-0 10 µM ABA / seedling Mock 1 h Basic hormone treatment of seedlings 0.24  
0.53