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Red Light 4 h
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Red Light 4 h Col-0 continuous Red Light /
seedlings		 White Light 4 h Light treatments 1.00  
1.00  
2 Blue Light 4 h Col-0 continuous Blue Light /
seedlings		 White Light 4 h Light treatments -0.83  
-0.70  
3 Dark 40 min pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 40 min. of
darkness / seedlings		 Dark 45 min Light treatments -0.80  
-0.65  
4 FarRed Light 4 h Col-0 continuous far red light
/ seedlings		 White Light 4 h Light treatments -0.80  
-0.62  
5 Dark 4 h pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 4 h
of darkness / seedlings		 Dark 4 h Light treatments -0.80  
-0.66  
6 Dark 44min pls RedLigh 1min Col-0 1 min. red light pulse
followed by 44 min.
darkness / seedlings		 Dark 45 min Light treatments -0.75  
-0.58  
7 Dark 40min pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 40
min. of darkness /
seedlings		 Dark 45 min Light treatments -0.75  
-0.49  
8 Mutant phyA (Red Light 1h) phyA Red Light / seedling Red Light 1h GEO bulk 0.75  
0.61  
9 Mutant cry1 (High Light) cry1 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk 0.74  
0.32  
10 Drought Stress 24 h (shoot) Col-0 drought (15 min. dry air
then further incubation
in closed vessel) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.70  
0.41  
11 Mature roots Col-0 no treatment / roots Control for tissue data Developmental series; organs / tissues at different ages 0.70  
0.20  
12 Mutant phyAphyB (Red Light 1h) phyA phyB Red Light / seedling Red Light 1h GEO bulk 0.70  
0.42  
13 Red Light 1h Col-0 Red Light / seedling Wild type(Dark) GEO bulk -0.69  
-0.64  
14 Mutant hy5 (High Light) hy5 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk 0.68  
0.28  
15 Mutant hy5 hy5 Continuous white light /
seedling		 Col-0 GEO bulk 0.67  
0.07  
16 ARR22-ox ARR22-ox no treatment / seedling Col-0 Cytokinin treatment of seedlings -0.65  
-0.09  
17 Dark 4 h pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments -0.62  
-0.34  
18 Red Light 45min Col-0 continuous red light /
seedlings		 White Light 45min Light treatments 0.62  
-0.13  
19 Brassinolide 0.5 h (det2) det2-1 10 nM brassinolide /
seedling		 Mock 0.5 h (det2) Basic hormone treatment of seedlings -0.58  
0.05  
20 Mutant lfy-12(shoot apex) lfy-12 no treatment / shoot
apex, inflorescence
(after bolting)		 Shoot apex inflorescence (after bolting) Developmental series; organs / tissues at different ages -0.57  
-0.18  
21 Ibuprofen 3 h Col-0 10 µM Ibuprofen /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings -0.55  
0.12  
22 IAA 1 h Col-0 1 µM IAA / seedling Mock 1 h Basic hormone treatment of seedlings 0.54  
0.11  
23 Dark 4 h pls RedLight 1min Col-0 1 min. red light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments -0.53  
-0.29  
24 Fe starvation 72 h Col Fe starvation / whole
roots		 Control GEO bulk 0.51  
0.08  
25 PNO8 3 h Col-0 1 µM PNO8 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings -0.50  
-0.11  
26 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.50  
0.33  
27 Cotyledons Col-0 no treatment /
cotyledons		 Control for tissue data Developmental series; organs / tissues at different ages -0.50  
-0.02