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FarRed Light 45min
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments 1.00  
1.00  
2 Dark 40 min pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 40 min. of
darkness / seedlings		 Dark 45 min Light treatments -0.80  
-0.66  
3 FarRed Light 4 h Col-0 continuous far red light
/ seedlings		 White Light 4 h Light treatments -0.80  
-0.51  
4 Dark 40min pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 40
min. of darkness /
seedlings		 Dark 45 min Light treatments -0.79  
-0.60  
5 Blue Light 4 h Col-0 continuous Blue Light /
seedlings		 White Light 4 h Light treatments -0.78  
-0.59  
6 Pedicels stage15 Col-0 no treatment / flowers
stage 15, pedicels		 Control for tissue data Developmental series; organs / tissues at different ages 0.74  
0.03  
7 Dark 44min pls RedLigh 1min Col-0 1 min. red light pulse
followed by 44 min.
darkness / seedlings		 Dark 45 min Light treatments -0.73  
-0.70  
8 Red Light 1h Col-0 Red Light / seedling Wild type(Dark) GEO bulk -0.73  
-0.55  
9 Salicylic Acid 3 h Col-0 10µM salicylic acid
/ seedlings		 Mock 3 h Effect of other inhibitors on seedlings -0.72  
-0.08  
10 MG132 3 h Col-0 10 µM MG132 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings -0.71  
-0.20  
11 Red Light 45min Col-0 continuous red light /
seedlings		 White Light 45min Light treatments 0.71  
0.70  
12 Mutant sav3-2 (SH) sav3-2 Low R:FR light /
seedling		 Col-0 (SH) GEO bulk -0.71  
-0.55  
13 IAA 0.5 h Col-0 1 µM IAA / seedling Mock 0.5 h Basic hormone treatment of seedlings 0.69  
0.47  
14 IAA 1 h Col-0 1 µM IAA / seedling Mock 1 h Basic hormone treatment of seedlings 0.69  
0.51  
15 Seeds stage3 with siliques Col-0 no treatment / siliques,
w/ seeds stage 3 (long
days)		 Control for tissue data Developmental series; organs / tissues at different ages 0.69  
-0.07  
16 Brz220 3 h Col-0 10 µM BRZ220 /
seedling		 Mock 3 h Effect of brassinosteroid inhibitors on seedlings -0.68  
-0.15  
17 Salt Stress 24 h (shoot) Col-0 salt stress (150 mM
NaCl) / shoots		 Stress mock 24 h (shoot) Stress treatments -0.67  
-0.30  
18 Mutant axr3-1 axr3-1 mock / seedling Col GEO bulk -0.67  
0.27  
19 Mutant NahG(leaf) Nahg no treatment / leaves Col-0 (leaf) GEO bulk 0.66  
0.03  
20 Mutant phyA (Red Light 1h) phyA Red Light / seedling Red Light 1h GEO bulk 0.66  
0.34  
21 Dark 4 h pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 4 h
of darkness / seedlings		 Dark 4 h Light treatments -0.65  
-0.31  
22 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments -0.65  
0.14  
23 Mutant iaa17-6 iaa17-6 mock / seedling Col GEO bulk -0.65  
-0.26  
24 Mutant nph4-1_arf19-1 (IAA) nph4-1 arf19-1 5 µM IAA / seedling Col (IAA) GEO bulk -0.64  
-0.25  
25 Mutant iaa5_6_19 iaa5 iaa6 iaa19 mock / seedling Col GEO bulk -0.64  
-0.29  
26 Mutant sav3-2 (WL) sav3-2 Continuous white light /
seedling		 Col-0 (WL) GEO bulk -0.64  
-0.10  
27 B.cinerea 18 h infection CS6673 B. cinerea infection /
leaf		 Mock 18 h Botrytis cinerea infection -0.63  
-0.31  
28 Propiconazole 3 h Col-0 10 µM propiconazole
/ seedling		 Mock 3 h Effect of GA inhibitors on seedlings -0.62  
-0.23  
29 Mature roots Col-0 no treatment / roots Control for tissue data Developmental series; organs / tissues at different ages -0.62  
-0.15  
30 Expanding leaf Col-0 no treatment / leaves
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages 0.62  
0.10  
31 IAA 3 h Col-0 1 µM IAA / seedling Mock 3 h Basic hormone treatment of seedlings 0.61  
0.43  
32 Uniconazole 3 h Col-0 10 µM uniconazole /
seedling		 Mock 3 h Effect of GA inhibitors on seedlings -0.61  
-0.28  
33 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings -0.61  
0.23  
34 Paclobutrazol 3 h Col-0 10 µM paclobutrazol
/ seedling		 Mock 3 h Effect of GA inhibitors on seedlings -0.60  
-0.31  
35 Petiol (leaf7) Col-0 no treatment / leaf 7,
petiole		 Control for tissue data Developmental series; organs / tissues at different ages 0.60  
-0.01  
36 Mutant arf19-1 arf19-1 mock / seedling Col GEO bulk -0.60  
-0.22  
37 Mutant arf2 (etiol) arf2 mock / etiol seedling Col (etiol) GEO bulk -0.60  
0.17  
38 Mutant gh3.5-1D gh3.5-1D no treatment / leaves Col-0 GEO bulk -0.59  
-0.26  
39 Mutant cry1 (High Light) cry1 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk 0.59  
0.19  
40 ARR22-ox ARR22-ox no treatment / seedling Col-0 Cytokinin treatment of seedlings -0.58  
-0.17  
41 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments 0.58  
-0.18  
42 Naphthyl- phthalamic acid 3 h Col-0 10 µM NPA / seedling Mock 3 h Effect of auxin inhibitors on seedlings -0.57  
0.01  
43 Mutant phyAphyB (Red Light 1h) phyA phyB Red Light / seedling Red Light 1h GEO bulk 0.57  
0.19  
44 Dark 4 h pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments -0.56  
-0.23  
45 Mutant arf2-6 (IAA) arf2-6 5 µM IAA / seedling Col (IAA) GEO bulk 0.56  
0.44  
46 Mutant hy5 hy5 Continuous white light /
seedling		 Col-0 GEO bulk 0.56  
0.10  
47 P.syringae vir 4 h (leaf) Col-0 P.syringae vir 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments -0.55  
-0.21  
48 Mutant nph4-1 (IAA) nph4-1 5 µM IAA / seedling Col (IAA) GEO bulk -0.55  
-0.17  
49 Mutant cry1 cry1 Continuous white light /
seedling		 Col-0 GEO bulk 0.55  
0.19  
50 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments -0.54  
-0.17  
51 Mutant nph4-1 nph4-1 mock / seedling Col GEO bulk -0.54  
-0.26  
52 Mutant nph4-1_arf19-1 nph4-1 arf19-1 mock / seedling Col GEO bulk -0.54  
-0.17  
53 Norflurazon Col-0 5 µM Norflurazon /
seedling		 Col-0 GEO bulk -0.54  
-0.18  
54 Propiconazole 12 h Col-0 10 µM propiconazole
/ seedling		 Mock 12 h Effect of GA inhibitors on seedlings -0.53  
-0.28  
55 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages -0.52  
-0.05  
56 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk -0.52  
-0.08  
57 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk -0.52  
-0.23  
58 Mutant iaa17-6 (IAA) iaa17-6 5 µM IAA / seedling Col (IAA) GEO bulk 0.51  
-0.01  
59 Brz220 12 h Col-0 10 µM BRZ220 /
seedling		 Mock 12 h Effect of brassinosteroid inhibitors on seedlings -0.50  
-0.19  
60 AVG 3 h Col-0 10 µM AVG / seedling Mock 3 h Effect of ethylene inhibitors on seedlings -0.50  
-0.17  
61 2,3,5-Triiodobenzoic acid3 h Col-0 10 µM TIBA /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings -0.50  
0.22  
62 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk -0.50  
0.04  
63 Brassinolide 1 h (det2) det2-1 10 nM brassinolide /
seedling		 Mock 1 h (det2) Basic hormone treatment of seedlings 0.34  
0.51  
64 Blue Light 45 min Col-0 continuous blue light /
seedlings		 White Light 45min Light treatments 0.23  
0.58