Score |
Experiment |
Genotype |
Treatment / Tissue |
Control Experiment |
Experimental Category |
Correlation |
Gene list |
1 |
2,3,5-Triiodobenzoic acid3 h |
Col-0 |
10 µM TIBA / seedling |
Mock 3 h |
Effect of auxin inhibitors on seedlings |
1.00
1.00
|
|
2 |
AgNO3 3 h |
Col-0 |
10 µM AgNO3 / seedling |
Mock 3 h |
Effect of ethylene inhibitors on seedlings |
0.84
0.85
|
|
3 |
2,4,6-trichlorophenoxyacetic acid 3 h |
Col-0 |
10 µM 2,4,6T / seedling |
Mock 3 h |
Effect of auxin inhibitors on seedlings |
0.83
0.85
|
|
4 |
Phytoprostane A1 4 h |
Col |
75 µM phytoprostane A1 / seedling |
Col-0 |
GEO bulk |
0.83
0.85
|
|
5 |
Salicylic Acid 3 h |
Col-0 |
10µM salicylic acid / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.82
0.52
|
|
6 |
OPDA 4 h |
Col |
75 µM OPDA / seedling |
Col-0 |
GEO bulk |
0.79
0.39
|
|
7 |
ARR21C-ox |
ARR21C-ox |
no treatment / seedling |
Col-0 |
ARR21C overexpression |
0.76
0.24
|
|
8 |
At1g54160 ox |
At1g54160 ox (NFYA5) |
no treatment / seedling |
Col-0 |
GEO bulk |
0.76
0.32
|
|
9 |
Ibuprofen 3 h |
Col-0 |
10 µM Ibuprofen / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.74
0.76
|
|
10 |
Cycloheximide 3 h |
Col-0 |
10 µM CHX / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.74
0.63
|
|
11 |
PNO8 3 h |
Col-0 |
1 µM PNO8 / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.73
0.90
|
|
12 |
P-chlorophenoxy- isobutyric acid 3 h |
Col-0 |
10 µM PCIB / seedling |
Mock 3 h |
Effect of auxin inhibitors on seedlings |
0.73
0.79
|
|
13 |
Mutant axr3-1 |
axr3-1 |
mock / seedling |
Col |
GEO bulk |
0.73
0.69
|
|
14 |
MG132 3 h |
Col-0 |
10 µM MG132 / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
0.71
0.67
|
|
15 |
Selenate (root) |
WS |
Selenate 40 µM / root |
Ws (root) |
GEO bulk |
0.71
0.60
|
|
16 |
Fe starvation 72 h |
Col |
Fe starvation / whole roots |
Control |
GEO bulk |
0.69
0.56
|
|
17 |
DC3000 2 h (leaf) |
Col-0 |
infiltrated with 108 cfu/ml P. syringae pv. tomato DC3000 harvested after 2h / leaves |
Mock 2 h (leaf) |
Pseudomonas syringae pv. tomato or pv. phaseolicola infection |
0.65
0.51
|
|
18 |
Dark 40min pls UV-AB 5min |
Col-0 |
5 min. UV-A/B light pulse followed by 40 min. of darkness / seedlings |
Dark 45 min |
Light treatments |
0.65
0.23
|
|
19 |
Mutant nph4-1_arf19-1 |
nph4-1 arf19-1 |
mock / seedling |
Col |
GEO bulk |
0.64
0.27
|
|
20 |
Mutant iaa17-6 (IAA) |
iaa17-6 |
5 µM IAA / seedling |
Col (IAA) |
GEO bulk |
0.64
0.29
|
|
21 |
Dark 4 h pls UV-AB 5min |
Col-0 |
5 min. UV-A/B light pulse followed by 4 h of darkness / seedlings |
Dark 4 h |
Light treatments |
0.62
0.38
|
|
22 |
Mutant arf2-6 |
arf2-6 |
mock / seedling |
Col |
GEO bulk |
0.62
-0.10
|
|
23 |
K starvation (root) |
ws-2 |
K starvation / root |
Ws (root) |
GEO bulk |
0.62
0.66
|
|
24 |
HairpinZ 4 h (leaf) |
Col-0 |
infiltrated with 10 µM HrpZ / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.61
0.45
|
|
25 |
Mutant arf2-6 (IAA) |
arf2-6 |
5 µM IAA / seedling |
Col (IAA) |
GEO bulk |
0.61
0.53
|
|
26 |
Genotoxic Stress 3 h (root) |
Col-0 |
genotoxic stress (1.5 µg/ml bleomycin + 22 µg/ml mitomycin) / roots |
Stress mock 3 h (root) |
Stress treatments |
-0.60
0.06
|
|
27 |
Phaseolicola 2 h (leaf) |
Col-0 |
infiltrated with 108 cfu/ml P. syringae pv. phaseolicola harvested after 2h / leaves |
Mock 2 h (leaf) |
Pseudomonas syringae pv. tomato or pv. phaseolicola infection |
0.60
0.53
|
|
28 |
Naphthyl- phthalamic acid 3 h |
Col-0 |
10 µM NPA / seedling |
Mock 3 h |
Effect of auxin inhibitors on seedlings |
0.59
0.61
|
|
29 |
ARR22-ox (t-zeatin 3 h) |
ARR22-ox |
20 µM t-zeatin / seedling |
Col-0 (t-zeatin 3 h) |
Cytokinin treatment of seedlings |
0.59
0.48
|
|
30 |
Sepals stage15 |
Col-0 |
no treatment / flowers stage 15, sepals |
Control for tissue data |
Developmental series; organs / tissues at different ages |
0.59
0.30
|
|
31 |
-Sulfate 2 h |
Col-0 |
0 µM sulfate / root |
Mock 2 h (1500uM sulfate) |
Response to sulfate limitation |
0.56
0.26
|
|
32 |
Salt Stress 24 h (root) |
Col-0 |
salt stress (150 mM NaCl) / roots |
Stress mock 24 h (root) |
Stress treatments |
0.56
0.49
|
|
33 |
Mutant iaa5_6_19(IAA) |
iaa5 iaa6 iaa19 |
5 µM IAA / seedling |
Col (IAA) |
GEO bulk |
0.56
0.06
|
|
34 |
GST NPP1 4 h (leaf) |
Col-0 |
infiltrated with 1 µM GST-NPP1 / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.55
0.47
|
|
35 |
Mutant axr3-1 (IAA) |
axr3-1 |
5 µM IAA / seedling |
Col (IAA) |
GEO bulk |
0.55
0.75
|
|
36 |
Propiconazole 3 h |
Col-0 |
10 µM propiconazole / seedling |
Mock 3 h |
Effect of GA inhibitors on seedlings |
0.54
0.53
|
|
37 |
Osmotic Stress 24 h (shoot) |
Col-0 |
osmotic stress (300 mM mannitol) / shoots |
Stress mock 24 h (shoot) |
Stress treatments |
0.54
0.40
|
|
38 |
PNO8 12 h |
Col-0 |
1 µM PNO8 / seedlings |
Mock 12 h |
Effect of other inhibitors on seedlings |
0.53
0.16
|
|
39 |
Fe starvation 3 h |
Col |
Fe starvation / whole roots |
Control |
GEO bulk |
0.53
0.20
|
|
40 |
-Sulfate 24 h |
Col-0 |
0 µM sulfate / root |
Mock 24 h (1500uM sulfate) |
Response to sulfate limitation |
0.52
0.55
|
|
41 |
Mutant arf2 (etiol) |
arf2 |
mock / etiol seedling |
Col (etiol) |
GEO bulk |
0.52
0.44
|
|
42 |
Norflurazon |
Col-0 |
5 µM Norflurazon / seedling |
Col-0 |
GEO bulk |
0.52
-0.07
|
|
43 |
ARR22-ox |
ARR22-ox |
no treatment / seedling |
Col-0 |
Cytokinin treatment of seedlings |
0.51
0.15
|
|
44 |
Mutant sav3-2 (WL) |
sav3-2 |
Continuous white light / seedling |
Col-0 (WL) |
GEO bulk |
0.51
-0.03
|
|
45 |
GST 4 h (leaf) |
Col-0 |
infiltrated with 1µM GST / leaves |
Mock 4 h (leaf) |
Elicitor treatments |
0.50
0.38
|
|
46 |
P. infestans 6 h (leaf) |
Col-0 |
P. infestans 6 h (leaf) / leaves |
Mock 6 h (leaf) |
Elicitor treatments |
0.50
0.62
|
|
47 |
Mutant siz1-3 (Drought) |
siz1-3 |
Drought / not identified |
Col-0 (Drought) |
GEO bulk |
0.50
0.35
|
|
48 |
Mutant hy5 (High Light) |
hy5 |
high light: 1000 µmol quanta m-2 s-1 / seedling |
Col-0 (High Light) |
GEO bulk |
0.50
0.16
|
|
49 |
Fe starvation 24 h |
Col |
Fe starvation / whole roots |
Control |
GEO bulk |
0.45
0.61
|
|
50 |
Mutant ga1-5 |
ga1-5 |
no treatment / seedling |
Ler-1 |
Comparison of plant hormone related mutant |
-0.43
-0.50
|
|
51 |
Brz220 3 h |
Col-0 |
10 µM BRZ220 / seedling |
Mock 3 h |
Effect of brassinosteroid inhibitors on seedlings |
0.42
0.58
|
|
52 |
B.cinerea 18 h infection |
CS6673 |
B. cinerea infection / leaf |
Mock 18 h |
Botrytis cinerea infection |
0.40
0.52
|
|
53 |
Brz220 12 h |
Col-0 |
10 µM BRZ220 / seedling |
Mock 12 h |
Effect of brassinosteroid inhibitors on seedlings |
0.35
0.53
|
|
54 |
Uniconazole 3 h |
Col-0 |
10 µM uniconazole / seedling |
Mock 3 h |
Effect of GA inhibitors on seedlings |
0.34
0.70
|
|
55 |
FarRed Light 45min |
Col-0 |
continuous far red light / seedlings |
White Light 45min |
Light treatments |
0.22
-0.50
|
|
56 |
ACC 0.5 h |
Col-0 |
10 µM ACC / seedling |
Mock 0.5 h |
Basic hormone treatment of seedlings |
0.18
0.51
|
|
57 |
IAA 3 h |
Col-0 |
1 µM IAA / seedling |
Mock 3 h |
Basic hormone treatment of seedlings |
0.13
0.59
|
|
58 |
Daminozide3 h |
Col-0 |
10 µM Daminozide / seedlings |
Mock 3 h |
Effect of other inhibitors on seedlings |
-0.10
0.63
|
|
59 |
Paclobutrazol 3 h |
Col-0 |
10 µM paclobutrazol / seedling |
Mock 3 h |
Effect of GA inhibitors on seedlings |
0.08
0.68
|
|