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AvrRpm1 2 h (leaf)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 1.00  
1.00  
2 DC3000 hrcC 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 hrcC-
harvested after 2h /
leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.86  
0.91  
3 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.86  
0.84  
4 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.85  
0.80  
5 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.85  
0.78  
6 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.84  
0.79  
7 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 0.83  
0.71  
8 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.83  
0.75  
9 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.83  
0.80  
10 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.74  
0.66  
11 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.70  
0.58  
12 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.70  
0.37  
13 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.67  
0.55  
14 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.66  
0.55  
15 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.66  
0.56  
16 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.64  
0.26  
17 ARR22-ox (t-zeatin 3 h) ARR22-ox 20 µM t-zeatin /
seedling		 Col-0 (t-zeatin 3 h) Cytokinin treatment of seedlings 0.63  
0.34  
18 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.63  
0.33  
19 Flower (stage12) Col-0 no treatment / flower
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.61  
-0.17  
20 Salt Stress 24 h (root) Col-0 salt stress (150 mM
NaCl) / roots		 Stress mock 24 h (root) Stress treatments 0.59  
0.34  
21 Uniconazole 12 h Col-0 10 µM uniconazole /
seedling		 Mock 12 h Effect of GA inhibitors on seedlings 0.58  
0.23  
22 Shoot apex transition (before bolting) Col-0 no treatment / shoot
apex, transition (before
bolting)		 Control for tissue data Developmental series; organs / tissues at different ages -0.58  
-0.09  
23 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk 0.57  
0.60  
24 Wounding Stress3 h (shoot) Col-0 wounding (punctured with
pins at beginning of
treatment) / shoots		 Stress mock 3 h (shoot) Stress treatments 0.56  
0.37  
25 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.56  
0.47  
26 Mature pollen Col-0 no treatment / mature
pollen		 Control for tissue data Developmental series; organs / tissues at different ages 0.55  
0.15  
27 Mutant arf2-6 arf2-6 mock / seedling Col GEO bulk -0.55  
-0.30  
28 Stamen stage15 Col-0 no treatment / flowers
stage 15 stamen		 Control for tissue data Developmental series; organs / tissues at different ages 0.50  
0.18  
29 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.49  
0.53  
30 IAA 3 h Col-0 1 µM IAA / seedling Mock 3 h Basic hormone treatment of seedlings 0.30  
0.60