4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on atmyc2 Seedling Dark
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List of experiments correlated with "atmyc2 Seedling Dark"  Help Download transcriptome of top 30
Score Experiment Correlation from
atmyc2 Seedling Dark		 Correlation to
atmyc2 Seedling Dark		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 atmyc2 Seedling Dark 1.00 >More info 1.00 >More info WT Seedling Dark Original data GEO bulk
2 rrd2 IBA 0.77 >More info 0.75 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
3 SAM SE agl15 agl18 double mutant 0.77 >More info 0.71 >More info SAM SE Col Original data GEO bulk
4 arp6-10 12 ºC -0.73 >More info -0.73 >More info Col-0 12 ºC whole seedlings Original data GEO bulk
5 oxt6:AtCPSF30 line -0.73 >More info -0.62 >More info oxt6 mutant Original data GEO bulk
6 cop1 Seedling Dark 0.66 >More info 0.66 >More info WT Seedling Dark Original data GEO bulk
7 dark +H2O2 -0.61 >More info -0.68 >More info dark 5 mM H2O2 seedling Original data GEO bulk
8 agb1 gpa1 -ABA LF 0.59 >More info 0.70 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
9 ubp1c-1/35S:FLAG-UBP1C IP-RNA 2hMockDark 0.57 >More info 0.69 >More info ubp1c-1/35S:FLAG-UBP1C Total-RNA 2hMockDark 2 h mock dark seedling Original data
10 tbf1-SA 0.65 >More info 0.57 >More info WT-SA 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
11 KCl germinant 0.65 >More info 0.56 >More info Millipore Water germinant KCl seedling Original data
12 roottip hypoxia pSHR -0.59 >More info -0.60 >More info roottip hypoxia total hypoxia roottip Original data GEO bulk
13 ubp1c-1/35S:FLAG-UBP1C IP-RNA 2hLight 0.55 >More info 0.63 >More info ubp1c-1/35S:FLAG-UBP1C Total-RNA 2hLight 2 h light seedling Original data
14 gpa1 +ABA LF -0.64 >More info -0.53 >More info Col-0 +ABA LF Leaves of five week-old plants Original data GEO bulk
15 arp6-10 2h 27 -degree-C -0.63 >More info -0.52 >More info Col-0 2h at 27 ºC whole seedlings Original data GEO bulk
16 ubp1c-1/35S:FLAG-UBP1C IP-RNA
2hHypoxia+20&9;Reoxy		 0.54 >More info 0.60 >More info ubp1c-1/35S:FLAG-UBP1C Total-RNA
2hHypoxia+20&9;Reoxy		 2 h hypoxia +2' reoxy seedling Original data
17 roottip control pSHR -0.54 >More info -0.59 >More info roottip control total control roottip Original data GEO bulk
18 npr1-3 DCA 48h -0.50 >More info -0.63 >More info npr1-3 MOCK 48h Original data GEO bulk
19 nNOS-drought 0.56 >More info 0.55 >More info WT-drought leaf Original data
20 Col-0 +ABA LF 0.63 >More info 0.46 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
21 agb1 -ABA LF 0.52 >More info 0.57 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
22 roottip control p35S -0.53 >More info -0.54 >More info roottip control total control roottip Original data GEO bulk
23 bHLH122 ox -0.53 >More info -0.54 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
24 SAM SE 35S:AGL15 0.62 >More info 0.43 >More info SAM SE Col Original data GEO bulk
25 WT-elf18 0.58 >More info 0.46 >More info WT-mock infiltration 10 µM elf18 for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
26 3m.KCl 0.56 >More info 0.47 >More info To. KCl 14 day old Roots Original data GEO bulk
27 axr2 -0.51 >More info -0.50 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
28 3m.KNO3 0.51 >More info 0.50 >More info To. KNO3 14 day old Roots Original data GEO bulk
29 tbf1-mock spray 0.51 >More info 0.49 >More info WT-mock spray water for 6 hrs (spray) mature leaf Original data GEO bulk
30 bri1-5 mutant -0.56 >More info -0.43 >More info WT 7 day-old whole seedlings Original data
31 Daminozide 3 h 0.35 >More info 0.64 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
32 root control pSultr2:2 -0.56 >More info -0.41 >More info root control total control root Original data GEO bulk
33 root hypoxia pSHR -0.42 >More info -0.55 >More info root hypoxia total hypoxia root Original data GEO bulk
34 root hypoxia pCO2 -0.55 >More info -0.39 >More info root hypoxia total hypoxia root Original data GEO bulk
35 cop1 Seedling BL -0.56 >More info -0.38 >More info WT Seedling BL Original data GEO bulk
36 dsr1 -0.54 >More info -0.40 >More info WT mock Whole seedling Original data GEO bulk
37 polysome mRNA eif3k -0.42 >More info -0.52 >More info polysome mRNA WT aerial part Original data GEO bulk
38 root hypoxia pWOL -0.38 >More info -0.53 >More info root hypoxia total hypoxia root Original data GEO bulk
39 Nicotinamide-77hr 0.50 >More info 0.40 >More info WT-untreated-77hr nicotinamide aerial tissue Original data GEO bulk
40 vtc2 mature somatic embryo 0.53 >More info 0.37 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
41 spx1 spx2 resupplied Pi 4h 0.65 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
42 Indigo Carmine 0.5 uM 0.39 >More info 0.50 >More info Control MV and IC Indigo Carmine Original data
43 msg2 -0.53 >More info -0.35 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
44 OE-HRA1 NS  0.59 >More info 0.28 >More info Col-0NS 2 h non-stress (2NS) 7-day-old seedlings Original data
45 afb3-1 2h KCl -0.63 >More info -0.23 >More info Ws 2h KCl 2 hours of 5 mM KCl Arabidopsis root Original data GEO bulk
46 atmyc2 cop1 Seedling BL -0.52 >More info -0.33 >More info WT Seedling BL Original data GEO bulk
47 Imbibed 24 h ABA 3uM (seed) 0.20 >More info 0.63 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
48 tga1 tga4 2h KCl 0.28 >More info 0.55 >More info Col 0 2h KCl 5 mM KCl root Original data GEO bulk
49 Red/FR Light45min -0.22 >More info -0.61 >More info FarRed Light 45min Original data Light treatments
50 Laer pretreat GA Flg22 1h 0.10 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
51 AFB1 0h -0.26 >More info -0.53 >More info Col 0h Leaf Original data GEO bulk
52 IAA7mII over-expressor IAA Treated 0.10 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
53 agb1 +ABA LF -0.54 >More info -0.23 >More info Col-0 +ABA LF Leaves of five week-old plants Original data GEO bulk
54 bri1-116 0.03 >More info 0.73 >More info Col seedling Original data GEO bulk
55 Van SA 0.54 >More info 0.21 >More info Col-0 SA Original data GEO bulk
56 cat2-2; 8h switch to ambient CO2 concentrations; -0.52 >More info -0.22 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
57 msh1 recA3 untreated -0.51 >More info -0.23 >More info WT untreated above-ground parts Original data GEO bulk
58 toc1-1-81hr -0.18 >More info -0.54 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
59 dark +lincomycin 0.20 >More info 0.52 >More info dark -lincomycin Original data GEO bulk
60 phyB mutant 16C 4hrs -0.16 >More info -0.55 >More info 16C 4hs whole plant excluding roots Original data GEO bulk
61 OE-HRA1 2HS  0.54 >More info 0.16 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
62 light -0.52 >More info -0.18 >More info dark light seedling Original data GEO bulk
63 gapcp1gapcp2 ABA 0.19 >More info 0.50 >More info WT ABA ABA seedling Original data GEO bulk
64 Col0-PsmES4326-24hpi 0.07 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
65 Nicotinamide-53hr 0.50 >More info 0.17 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
66 des1.1 0.52 >More info 0.15 >More info Leaves-WT leaf Original data GEO bulk
67 P.syringae vir 4 h (leaf) -0.17 >More info -0.50 >More info Mock 4 h (leaf) Original data Elicitor treatments
68 Leafminer damaged seedlings 0.11 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
69 CCA1-ox 6am non-polysomal 0.11 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
70 seed germinating in countinuous light 24h SL -0.08 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
71 20m.KNO3 -0.50 >More info -0.08 >More info To. KNO3 14 day old Roots Original data GEO bulk
72 46T-CK -0.57 >More info -0.00 >More info WT-CK none Original data
73 long 17-degree- 0.06 >More info -0.61 >More info control long Original data GEO bulk
74 Shoot apex inflorescence (after bolting) -0.12 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
75 GO5; 8h switch to ambient CO2 concentrations; -0.50 >More info -0.02 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
76 Col BTH -0.16 >More info 0.67 >More info Col rosettes Original data GEO bulk
77 FarRed Light 45min -0.12 >More info 0.61 >More info White Light 45min Original data Light treatments
78 Heat shock optimum -0.24 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
79 atmyc2 Seedling BL -0.64 >More info 0.25 >More info WT Seedling BL Original data GEO bulk
80 siliques AtHb1 control -0.20 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
81 iron minus 24h -0.25 >More info 0.51 >More info iron +24h root Original data GEO bulk