4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on whole seeds
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List of experiments correlated with "whole seeds"  Help Download transcriptome of top 30
Score Experiment Correlation from
whole seeds		 Correlation to
whole seeds		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 whole seeds 1.00 >More info 1.00 >More info Control for tissue data Original data GEO bulk
2 whole seeds mature green 0.93 >More info 0.93 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
3 embryo proper 0.93 >More info 0.93 >More info Control for tissue data Original data GEO bulk
4 peripherial endosperm 0.91 >More info 0.92 >More info Control for tissue data Original data GEO bulk
5 peripheral endosperm mature green 0.92 >More info 0.90 >More info Control for tissue data peripherial endosperm captured by LCM Original data GEO bulk
6 embryo proper mature green 0.91 >More info 0.90 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
7 peripheral endosperm heart stage 0.90 >More info 0.91 >More info Control for tissue data peripheral endosperm captured by LCM Original data GEO bulk
8 micropylar endosperm mature green 0.91 >More info 0.90 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
9 micropylar endosperm heart stage 0.90 >More info 0.90 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
10 chalazal endosperm mature green 0.90 >More info 0.89 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
11 whole seeds heart stage 0.89 >More info 0.90 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
12 embryo proper heart stage 0.89 >More info 0.90 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
13 seed coat heart stage 0.89 >More info 0.89 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
14 chalazal seed coat 0.88 >More info 0.89 >More info Control for tissue data Original data GEO bulk
15 seed coat 0.88 >More info 0.89 >More info Control for tissue data Original data GEO bulk
16 Ambient CO2 leaf primordia 0.88 >More info 0.88 >More info Control for tissue data leaf primordia Original data
17 chalazal endosperm 0.88 >More info 0.88 >More info Control for tissue data Original data GEO bulk
18 seed germinating in countinuous light 48 h SL 0.87 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
19 Shoot apex transition (before bolting) 0.87 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
20 Inflorescences ler 0.87 >More info 0.87 >More info Control for tissue data inflorescences Original data GEO bulk
21 Carpels stage15 0.87 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
22 lec1-1 Mature Green Seed 0.87 >More info 0.87 >More info Control for tissue data Original data GEO bulk
23 Shoot apex vegetative 0.87 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
24 seed germinating in countinuous light 12 h SL 0.87 >More info 0.87 >More info Control for tissue data seed Original data GEO bulk
25 seed coat mature green 0.88 >More info 0.86 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
26 seed germinating in countinuous light 6 h SL 0.86 >More info 0.87 >More info Control for tissue data seed Original data GEO bulk
27 Bud 0.86 >More info 0.87 >More info Control for tissue data pollen grains and tubes Original data
28 Shoot apex vegetative &Young leaves 0.86 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
29 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (8 dpg)		 0.85 >More info 0.88 >More info Control for tissue data Original data GEO bulk
30 lec1-1 Cotyledon Stage Seed 0.87 >More info 0.86 >More info Control for tissue data Original data GEO bulk
31 lec1-1 Post-Mature Green Seed 0.86 >More info 0.87 >More info Control for tissue data Original data GEO bulk
32 chalazal seed coat mature green 0.87 >More info 0.86 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
33 Flower (stage12) 0.86 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
34 Root from tip to 130 mm proximal to tip (cut
8dpg)		 0.85 >More info 0.88 >More info Control for tissue data Original data GEO bulk
35 siliques 0.87 >More info 0.86 >More info Control for tissue data Original data GEO bulk
36 Regenerating Stump Root Tip Cut 130 mm andn Recut
13 hrs Taking 70 mm of Stump (4dpg)		 0.85 >More info 0.87 >More info Control for tissue data Original data GEO bulk
37 lec1-1 24h post-fertilization Seed 0.86 >More info 0.86 >More info Control for tissue data Original data GEO bulk
38 seed germinating in countinuous light 1 h SL 0.86 >More info 0.86 >More info Control for tissue data seed Original data GEO bulk
39 lec1-1 Globular Stage Seed 0.86 >More info 0.86 >More info Control for tissue data Original data GEO bulk
40 ovule 0.86 >More info 0.86 >More info Control for tissue data ovule Original data GEO bulk
41 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (4dpg)		 0.85 >More info 0.87 >More info Control for tissue data Original data GEO bulk
42 Root from tip to 130 mm proximal to tip (cut
4dpg)		 0.85 >More info 0.87 >More info Control for tissue data Original data GEO bulk
43 Seeds stage3 with siliques 0.86 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
44 QC 0.85 >More info 0.87 >More info Control for tissue data FACS-sorted protoplasts from roots Original data
45 Nuclei proembryo 0.85 >More info 0.87 >More info Control for tissue data proembryo Original data
46 Regenerating Stump Root Tip Cut 130 mm andn Recut
22 hrs Taking 70 mm of Stump (4dpg)		 0.85 >More info 0.87 >More info Control for tissue data Original data GEO bulk
47 Cells whole embryo 0.85 >More info 0.87 >More info Control for tissue data whole embryo Original data
48 Section Root from70 mm to 340 mm harvested
immediately		 0.85 >More info 0.87 >More info Control for tissue data Original data GEO bulk
49 flowers 0.86 >More info 0.86 >More info Control for tissue data Original data GEO bulk
50 Ambient CO2 expanding leaf 0.87 >More info 0.85 >More info Control for tissue data expanding leaf Original data
51 Regenerating Stump Root Tip Cut 130 mm andn Recut
5 hrs Taking 70 mm of Stump (4dpg)		 0.85 >More info 0.87 >More info Control for tissue data Original data GEO bulk
52 Apex 5DAS 0.86 >More info 0.85 >More info Control for tissue data Original data GEO bulk
53 pericycle control 0.85 >More info 0.86 >More info Control for tissue data mock pericycle Original data GEO bulk
54 KAN1 0.85 >More info 0.86 >More info Control for tissue data shoot apical meristem Original data GEO bulk
55 flower-buds 0.86 >More info 0.85 >More info Control for tissue data Original data GEO bulk
56 in vivo pollen tube 0.86 >More info 0.85 >More info Control for tissue data pollen tube Original data GEO bulk
57 LAS 0.85 >More info 0.86 >More info Control for tissue data shoot apical meristem Original data GEO bulk
58 seed during stratification 48 h S 0.86 >More info 0.85 >More info Control for tissue data seed Original data GEO bulk
59 Pedicels stage15 0.86 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
60 Rosette leaf No12 0.86 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
61 Hypocotyl 0.86 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
62 chalazal endosperm heart stage 0.86 >More info 0.85 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
63 silique 0.86 >More info 0.85 >More info Control for tissue data silique Original data GEO bulk
64 WT cotyledons 0.86 >More info 0.85 >More info Control for tissue data cotyledons Original data
65 seedling 0.85 >More info 0.86 >More info Control for tissue data seedling Original data GEO bulk
66 Apex 14DAS 0.86 >More info 0.85 >More info Control for tissue data Original data GEO bulk
67 unpollinated pistil 0.86 >More info 0.85 >More info Control for tissue data pistil Original data GEO bulk
68 Atape2 low light 0.85 >More info 0.86 >More info Control for tissue data shoot apical meristem Original data GEO bulk
69 intact root control 0.85 >More info 0.86 >More info Control for tissue data mock whole root Original data GEO bulk
70 HDG4 0.85 >More info 0.86 >More info Control for tissue data shoot apical meristem Original data GEO bulk
71 torpedo-basal 0.84 >More info 0.87 >More info Control for tissue data torpedo embryo basal tissue Original data GEO bulk
72 Callus 0.85 >More info 0.85 >More info Control for tissue data callus Original data GEO bulk
73 lateral nectary stage 11-12 0.85 >More info 0.85 >More info Control for tissue data lateral nectaries Original data GEO bulk
74 Petiol (leaf7) 0.85 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
75 Expanding leaf 0.85 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
76 epidermis control 0.84 >More info 0.86 >More info Control for tissue data mock epidermis Original data GEO bulk
77 heart-stage-root 0.83 >More info 0.87 >More info Control for tissue data Original data GEO bulk
78 HMG 0.85 >More info 0.85 >More info Control for tissue data shoot apical meristem Original data GEO bulk
79 Ambient CO2 fully expanded leaf 0.86 >More info 0.84 >More info Control for tissue data fully expanded leaf Original data
80 Seeds stage8 w/o siliques 0.85 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
81 Stem 1st node 0.85 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
82 Nuclei suspensor 0.84 >More info 0.85 >More info Control for tissue data suspensor Original data
83 Flowers stage15 0.85 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
84 Mature roots 0.84 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
85 Proximalhalf (leaf7) 0.85 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
86 EL (leaves 1-2) 14DAS 0.85 >More info 0.84 >More info Control for tissue data Original data GEO bulk
87 flower 0.85 >More info 0.84 >More info Control for tissue data flower Original data GEO bulk
88 AtHB8 0.85 >More info 0.84 >More info Control for tissue data shoot apical meristem Original data GEO bulk
89 S17 0.85 >More info 0.84 >More info Control for tissue data shoot apical meristem Original data GEO bulk
90 heart-stage-cotyledon 0.83 >More info 0.86 >More info Control for tissue data Original data GEO bulk
91 Cotyledons 0.84 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
92 Leaf 0.85 >More info 0.83 >More info Control for tissue data leaf Original data GEO bulk
93 median nectary stage 14-15 0.83 >More info 0.85 >More info Control for tissue data median nectaries Original data GEO bulk
94 Distal half (leaf7) 0.85 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
95 Stem 2ndinternode 0.85 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
96 ML (Mature leaves) 35DAS 0.85 >More info 0.83 >More info Control for tissue data Original data GEO bulk
97 B5 +AA -0.84 >More info -0.84 >More info B5 -AA B5 media and treated with AA Original data
98 leaf 0.84 >More info 0.84 >More info Control for tissue data leaf Original data GEO bulk
99 seed freshly harvested H 0.84 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
100 Anther 0.83 >More info 0.85 >More info Control for tissue data anther Original data
101 globular-basal 0.82 >More info 0.86 >More info Control for tissue data globular embryo basal tissue Original data GEO bulk
102 Cauline leaves 0.84 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
103 Petals stage15 0.84 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
104 cortex 0.83 >More info 0.84 >More info Control for tissue data cortex Original data GEO bulk
105 lateral nectary stage 14-15 0.83 >More info 0.84 >More info Control for tissue data lateral nectaries Original data GEO bulk
106 Rosette leaf No2 0.84 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
107 Col dryseed 0.84 >More info 0.83 >More info Control for tissue data dry seeds Original data
108 NAA +AA -0.84 >More info -0.83 >More info NAA -AA B5 media supplemented with 4.5 µM NAA and treated with AA Original data
109 globular-apical 0.81 >More info 0.86 >More info Control for tissue data globular embryo apical tissue Original data GEO bulk
110 dry seed 0 h 0.84 >More info 0.83 >More info Control for tissue data seed Original data GEO bulk
111 Senescing leaf 0.84 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
112 seed during stratification 1 h S 0.84 >More info 0.83 >More info Control for tissue data seed Original data GEO bulk
113 torpedo-meristem 0.82 >More info 0.84 >More info Control for tissue data torpedo embryo meristem tissue Original data GEO bulk
114 phloem sieve cells and companion cells 0.83 >More info 0.83 >More info Control for tissue data phloem Original data GEO bulk
115 Sepals stage15 0.83 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
116 seed during stratification 12 h S 0.84 >More info 0.82 >More info Control for tissue data seed Original data GEO bulk
117 mature endodermis glcal 0.82 >More info 0.83 >More info Control for tissue data endodermis Original data GEO bulk
118 root hair 0.82 >More info 0.83 >More info Control for tissue data root hairs Original data GEO bulk
119 differentiating xylem 0.82 >More info 0.83 >More info Control for tissue data xylem Original data GEO bulk
120 Emwa1 inoculated psk 3 dpi 0.84 >More info 0.81 >More info Emwa1 inoculated WT 3 dpi Cotyledons Original data GEO bulk
121 torpedo-root 0.81 >More info 0.83 >More info Control for tissue data Original data GEO bulk
122 pskr1-5 0.84 >More info 0.80 >More info wild type Cotyledons Original data GEO bulk
123 Stamen stage15 0.82 >More info 0.82 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
124 Mature pollen 0.81 >More info 0.81 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
125 in vitro pollen tube 0.81 >More info 0.80 >More info Control for tissue data pollen tube Original data
126 pollen 0.79 >More info 0.81 >More info Control for tissue data pollen grain Original data GEO bulk
127 seed germinating in countinuous light 24h SL 0.88 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
128 Salicylic Acid 3 h -0.83 >More info -0.70 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
129 Shoot apex inflorescence (after bolting) 0.87 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
130 L17 phyA line -0.82 >More info -0.62 >More info WT seedling Original data GEO bulk
131 chalazal seed coat heart stage 0.88 >More info 0.35 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
132 chalazal endosperm linear-cotyledon -0.45 >More info -0.73 >More info whole seeds linear-cotyledon Original data GEO bulk
133 chalazal seed coat linear-cotyledon -0.44 >More info -0.63 >More info whole seeds linear-cotyledon Original data GEO bulk
134 erf104-ko Flg22 4h -0.63 >More info -0.38 >More info erf104-ko H2O 4h Original data GEO bulk
135 2h KNO3 Whole root 0.60 >More info 0.36 >More info 2h KCl control Whole root Whole root Original data GEO bulk
136 Nuclei whole embryo 0.85 >More info 0.10 >More info Control for tissue data whole embryo Original data
137 torpedo-apical 0.84 >More info 0.11 >More info Control for tissue data torpedo embryo apical tissue Original data GEO bulk
138 2hr continuous KCl and MSX control PeR cell -0.38 >More info -0.56 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
139 C2H2 ZF TDNA mutant -0.52 >More info -0.40 >More info Col-WT mature pollen Original data GEO bulk
140 Starch sheath 2 days NAA 0.59 >More info 0.31 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
141 columella control 0.85 >More info 0.04 >More info Control for tissue data mock columella Original data GEO bulk
142 Heat shock optimum 0.24 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
143 sex4-3 0.54 >More info 0.33 >More info Col-WT leaves Original data GEO bulk
144 sfr3 cold -0.59 >More info -0.24 >More info WT-cold aerial tissues Original data GEO bulk
145 WT roots - Fe -0.22 >More info -0.58 >More info WT roots + Fe Roots Original data GEO bulk
146 opr3 OPDA 8 h 0.23 >More info 0.53 >More info opr3 0 h Original data GEO bulk
147 Col BTH 0.09 >More info 0.67 >More info Col rosettes Original data GEO bulk
148 ptpks2 0.54 >More info 0.21 >More info Col-WT leaves Original data GEO bulk
149 torpedo-cotyledon 0.83 >More info -0.09 >More info Control for tissue data Original data GEO bulk
150 bri1-116 0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
151 mpk6-ko H2O 4h 0.57 >More info 0.14 >More info Col-0 H2O 4h Original data GEO bulk
152 met1-3 fourth-selfed generation -0.20 >More info -0.51 >More info Col WT leaf Original data GEO bulk
153 C24 UV1 0.51 >More info 0.19 >More info C24 mock UV seedling Original data
154 HSP90 Reduced RNAi-A3 -0.50 >More info -0.18 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
155 4xX2x interploidy cross 0.13 >More info 0.54 >More info 2xX2x cross Original data GEO bulk
156 siliques AtHb1 control 0.12 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
157 rrd1 IBA 0.11 >More info 0.53 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
158 xyl-grown cell culture- 1h 1mM Suc -0.06 >More info -0.58 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
159 dsr1 -0.07 >More info -0.56 >More info WT mock Whole seedling Original data GEO bulk
160 35S:VND7-VP16-GR+CHX -0.09 >More info -0.54 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
161 myb3 myb3r4d -0.02 >More info -0.58 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
162 35S::ERF104 H2O 4h 0.54 >More info -0.00 >More info Col-0 H2O 4h Original data GEO bulk
163 erf104-ko H2O 4h 0.53 >More info -0.01 >More info Col-0 H2O 4h Original data GEO bulk
164 2xX4x interploidy cross 0.02 >More info -0.54 >More info 2xX2x cross Original data GEO bulk
165 Laer pretreat GA Flg22 1h -0.20 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
166 CCA1-ox 6am non-polysomal -0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
167 Leafminer damaged seedlings -0.09 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
168 cngc1-3 0.50 >More info -0.10 >More info Col-0 root Original data GEO bulk
169 Col0-PsmES4326-24hpi -0.23 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
170 IAA7mII over-expressor IAA Treated -0.41 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk