4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (4dpg)
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Score Experiment Correlation from
Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (4dpg)
Correlation to
Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (4dpg)
Control Experiment Genotype Treatment Tissue Link to
original data
Experimental
Category
Data set
Details
1 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (4dpg)
1.00 >More info 1.00 >More info Control for tissue data Original data GEO bulk
2 Regenerating Stump Root Tip Cut 130 mm andn Recut
22 hrs Taking 70 mm of Stump (4dpg)
0.97 >More info 0.96 >More info Control for tissue data Original data GEO bulk
3 Root from tip to 130 mm proximal to tip (cut
4dpg)
0.96 >More info 0.96 >More info Control for tissue data Original data GEO bulk
4 Regenerating Stump Root Tip Cut 130 mm andn Recut
13 hrs Taking 70 mm of Stump (4dpg)
0.96 >More info 0.95 >More info Control for tissue data Original data GEO bulk
5 Regenerating Stump Root Tip Cut 130 mm andn Recut
5 hrs Taking 70 mm of Stump (4dpg)
0.96 >More info 0.95 >More info Control for tissue data Original data GEO bulk
6 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (8 dpg)
0.95 >More info 0.95 >More info Control for tissue data Original data GEO bulk
7 Root from tip to 130 mm proximal to tip (cut
8dpg)
0.95 >More info 0.95 >More info Control for tissue data Original data GEO bulk
8 Section Root from70 mm to 340 mm harvested
immediately
0.94 >More info 0.95 >More info Control for tissue data Original data GEO bulk
9 torpedo-basal 0.92 >More info 0.91 >More info Control for tissue data torpedo embryo basal tissue Original data GEO bulk
10 Mature roots 0.92 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
11 Atape2 low light 0.92 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
12 LAS 0.91 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
13 lec1-1 Mature Green Seed 0.91 >More info 0.90 >More info Control for tissue data Original data GEO bulk
14 Cells whole embryo 0.91 >More info 0.90 >More info Control for tissue data whole embryo Original data
15 Shoot apex vegetative 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
16 Shoot apex transition (before bolting) 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
17 lec1-1 24h post-fertilization Seed 0.90 >More info 0.90 >More info Control for tissue data Original data GEO bulk
18 seed germinating in countinuous light 6 h SL 0.90 >More info 0.90 >More info Control for tissue data seed Original data GEO bulk
19 Callus 0.91 >More info 0.89 >More info Control for tissue data callus Original data GEO bulk
20 KAN1 0.91 >More info 0.89 >More info Control for tissue data shoot apical meristem Original data GEO bulk
21 Shoot apex vegetative &Young leaves 0.91 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
22 ovule 0.90 >More info 0.90 >More info Control for tissue data ovule Original data GEO bulk
23 Hypocotyl 0.91 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
24 seed germinating in countinuous light 48 h SL 0.91 >More info 0.89 >More info Control for tissue data seed Original data GEO bulk
25 Nuclei proembryo 0.90 >More info 0.90 >More info Control for tissue data proembryo Original data
26 HDG4 0.90 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
27 cortex 0.89 >More info 0.90 >More info Control for tissue data cortex Original data GEO bulk
28 lec1-1 Post-Mature Green Seed 0.90 >More info 0.89 >More info Control for tissue data Original data GEO bulk
29 seedling 0.91 >More info 0.88 >More info Control for tissue data seedling Original data GEO bulk
30 seed germinating in countinuous light 12 h SL 0.90 >More info 0.89 >More info Control for tissue data seed Original data GEO bulk
31 Apex 5DAS 0.90 >More info 0.88 >More info Control for tissue data Original data GEO bulk
32 Ambient CO2 leaf primordia 0.90 >More info 0.88 >More info Control for tissue data leaf primordia Original data
33 Inflorescences ler 0.90 >More info 0.88 >More info Control for tissue data inflorescences Original data GEO bulk
34 Carpels stage15 0.90 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
35 lateral nectary stage 11-12 0.90 >More info 0.88 >More info Control for tissue data lateral nectaries Original data GEO bulk
36 torpedo-meristem 0.89 >More info 0.89 >More info Control for tissue data torpedo embryo meristem tissue Original data GEO bulk
37 lec1-1 Globular Stage Seed 0.90 >More info 0.88 >More info Control for tissue data Original data GEO bulk
38 Rosette leaf No12 0.90 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
39 Flower (stage12) 0.90 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
40 Anther 0.90 >More info 0.88 >More info Control for tissue data anther Original data
41 HMG 0.90 >More info 0.88 >More info Control for tissue data shoot apical meristem Original data GEO bulk
42 Bud 0.90 >More info 0.87 >More info Control for tissue data pollen grains and tubes Original data
43 Nuclei suspensor 0.89 >More info 0.88 >More info Control for tissue data suspensor Original data
44 Petiol (leaf7) 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
45 Pedicels stage15 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
46 Proximalhalf (leaf7) 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
47 lec1-1 Cotyledon Stage Seed 0.89 >More info 0.88 >More info Control for tissue data Original data GEO bulk
48 Seeds stage3 with siliques 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
49 Expanding leaf 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
50 WT cotyledons 0.91 >More info 0.86 >More info Control for tissue data cotyledons Original data
51 Apex 14DAS 0.90 >More info 0.87 >More info Control for tissue data Original data GEO bulk
52 unpollinated pistil 0.90 >More info 0.87 >More info Control for tissue data pistil Original data GEO bulk
53 heart-stage-root 0.88 >More info 0.89 >More info Control for tissue data Original data GEO bulk
54 globular-apical 0.88 >More info 0.89 >More info Control for tissue data globular embryo apical tissue Original data GEO bulk
55 Stem 1st node 0.89 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
56 EL (leaves 1-2) 14DAS 0.90 >More info 0.86 >More info Control for tissue data Original data GEO bulk
57 phloem sieve cells and companion cells 0.89 >More info 0.87 >More info Control for tissue data phloem Original data GEO bulk
58 AtHB8 0.89 >More info 0.87 >More info Control for tissue data shoot apical meristem Original data GEO bulk
59 globular-basal 0.87 >More info 0.89 >More info Control for tissue data globular embryo basal tissue Original data GEO bulk
60 S17 0.89 >More info 0.87 >More info Control for tissue data shoot apical meristem Original data GEO bulk
61 siliques 0.89 >More info 0.87 >More info Control for tissue data Original data GEO bulk
62 heart-stage-cotyledon 0.88 >More info 0.88 >More info Control for tissue data Original data GEO bulk
63 Cotyledons 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
64 seed germinating in countinuous light 1 h SL 0.88 >More info 0.87 >More info Control for tissue data seed Original data GEO bulk
65 Leaf 0.89 >More info 0.86 >More info Control for tissue data leaf Original data GEO bulk
66 differentiating xylem 0.88 >More info 0.87 >More info Control for tissue data xylem Original data GEO bulk
67 flower-buds 0.89 >More info 0.86 >More info Control for tissue data Original data GEO bulk
68 in vivo pollen tube 0.89 >More info 0.86 >More info Control for tissue data pollen tube Original data GEO bulk
69 seed during stratification 48 h S 0.88 >More info 0.87 >More info Control for tissue data seed Original data GEO bulk
70 silique 0.89 >More info 0.86 >More info Control for tissue data silique Original data GEO bulk
71 Rosette leaf No2 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
72 flowers 0.88 >More info 0.87 >More info Control for tissue data Original data GEO bulk
73 Ambient CO2 expanding leaf 0.89 >More info 0.86 >More info Control for tissue data expanding leaf Original data
74 mature endodermis glcal 0.88 >More info 0.86 >More info Control for tissue data endodermis Original data GEO bulk
75 Seeds stage8 w/o siliques 0.88 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
76 root hair 0.87 >More info 0.87 >More info Control for tissue data root hairs Original data GEO bulk
77 Petals stage15 0.87 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
78 Flowers stage15 0.88 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
79 median nectary stage 14-15 0.87 >More info 0.87 >More info Control for tissue data median nectaries Original data GEO bulk
80 Distal half (leaf7) 0.89 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
81 Stem 2ndinternode 0.89 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
82 ML (Mature leaves) 35DAS 0.89 >More info 0.85 >More info Control for tissue data Original data GEO bulk
83 lateral nectary stage 14-15 0.88 >More info 0.86 >More info Control for tissue data lateral nectaries Original data GEO bulk
84 Senescing leaf 0.88 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
85 Ambient CO2 fully expanded leaf 0.89 >More info 0.85 >More info Control for tissue data fully expanded leaf Original data
86 Cauline leaves 0.88 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
87 micropylar endosperm heart stage 0.87 >More info 0.86 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
88 flower 0.88 >More info 0.85 >More info Control for tissue data flower Original data GEO bulk
89 leaf 0.88 >More info 0.85 >More info Control for tissue data leaf Original data GEO bulk
90 Sepals stage15 0.87 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
91 whole seeds 0.87 >More info 0.85 >More info Control for tissue data Original data GEO bulk
92 Stamen stage15 0.86 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
93 Col dryseed 0.87 >More info 0.85 >More info Control for tissue data dry seeds Original data
94 NAA +AA -0.88 >More info -0.84 >More info NAA -AA B5 media supplemented with 4.5 µM NAA and treated with AA Original data
95 seed freshly harvested H 0.87 >More info 0.85 >More info Control for tissue data seed Original data GEO bulk
96 embryo proper 0.87 >More info 0.85 >More info Control for tissue data Original data GEO bulk
97 torpedo-root 0.86 >More info 0.85 >More info Control for tissue data Original data GEO bulk
98 embryo proper mature green 0.87 >More info 0.84 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
99 peripheral endosperm heart stage 0.87 >More info 0.84 >More info Control for tissue data peripheral endosperm captured by LCM Original data GEO bulk
100 B5 +AA -0.88 >More info -0.83 >More info B5 -AA B5 media and treated with AA Original data
101 QC 0.86 >More info 0.85 >More info Control for tissue data FACS-sorted protoplasts from roots Original data
102 seed during stratification 12 h S 0.87 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
103 Mature pollen 0.86 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
104 dry seed 0 h 0.87 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
105 whole seeds mature green 0.87 >More info 0.84 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
106 seed during stratification 1 h S 0.87 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
107 embryo proper heart stage 0.86 >More info 0.85 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
108 peripheral endosperm mature green 0.87 >More info 0.83 >More info Control for tissue data peripherial endosperm captured by LCM Original data GEO bulk
109 pericycle control 0.86 >More info 0.84 >More info Control for tissue data mock pericycle Original data GEO bulk
110 whole seeds heart stage 0.86 >More info 0.84 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
111 seed coat heart stage 0.86 >More info 0.84 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
112 micropylar endosperm mature green 0.87 >More info 0.83 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
113 chalazal endosperm mature green 0.86 >More info 0.83 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
114 chalazal endosperm 0.86 >More info 0.83 >More info Control for tissue data Original data GEO bulk
115 chalazal seed coat mature green 0.86 >More info 0.83 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
116 peripherial endosperm 0.85 >More info 0.84 >More info Control for tissue data Original data GEO bulk
117 intact root control 0.85 >More info 0.84 >More info Control for tissue data mock whole root Original data GEO bulk
118 chalazal seed coat 0.86 >More info 0.83 >More info Control for tissue data Original data GEO bulk
119 seed coat 0.86 >More info 0.83 >More info Control for tissue data Original data GEO bulk
120 Emwa1 inoculated psk 3 dpi 0.87 >More info 0.81 >More info Emwa1 inoculated WT 3 dpi Cotyledons Original data GEO bulk
121 epidermis control 0.85 >More info 0.83 >More info Control for tissue data mock epidermis Original data GEO bulk
122 seed coat mature green 0.86 >More info 0.82 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
123 pollen 0.83 >More info 0.84 >More info Control for tissue data pollen grain Original data GEO bulk
124 pskr1-5 0.86 >More info 0.80 >More info wild type Cotyledons Original data GEO bulk
125 in vitro pollen tube 0.83 >More info 0.83 >More info Control for tissue data pollen tube Original data
126 chalazal endosperm heart stage 0.83 >More info 0.82 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
127 L17 phyA line -0.84 >More info -0.77 >More info WT seedling Original data GEO bulk
128 seed germinating in countinuous light 24h SL 0.91 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
129 Shoot apex inflorescence (after bolting) 0.91 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
130 Salicylic Acid 3 h -0.87 >More info -0.65 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
131 chalazal seed coat heart stage 0.86 >More info 0.35 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
132 2h KNO3 Whole root 0.70 >More info 0.38 >More info 2h KCl control Whole root Whole root Original data GEO bulk
133 torpedo-apical 0.90 >More info 0.11 >More info Control for tissue data torpedo embryo apical tissue Original data GEO bulk
134 Nuclei whole embryo 0.90 >More info 0.10 >More info Control for tissue data whole embryo Original data
135 Starch sheath 2 days MS incubation 0.62 >More info 0.36 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
136 Starch sheath 2 days NAA 0.69 >More info 0.28 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
137 Heat shock optimum 0.32 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
138 erf104-ko Flg22 4h -0.67 >More info -0.28 >More info erf104-ko H2O 4h Original data GEO bulk
139 columella control 0.86 >More info 0.04 >More info Control for tissue data mock columella Original data GEO bulk
140 Starch sheath 5 days MS incubation 0.60 >More info 0.26 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
141 24h SL Attim 17-1 1 0.50 >More info 0.34 >More info 0 h Attim 17-1 1 seed Original data
142 Col BTH 0.17 >More info 0.67 >More info Col rosettes Original data GEO bulk
143 sex4-3 0.50 >More info 0.33 >More info Col-WT leaves Original data GEO bulk
144 miR393 0h 0.50 >More info 0.30 >More info WT 0h Leaf tissue Original data GEO bulk
145 torpedo-cotyledon 0.87 >More info -0.09 >More info Control for tissue data Original data GEO bulk
146 ptpks2 0.55 >More info 0.22 >More info Col-WT leaves Original data GEO bulk
147 HSP90 Reduced RNAi-A3 -0.65 >More info -0.12 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
148 met1-3 fourth-selfed generation -0.24 >More info -0.53 >More info Col WT leaf Original data GEO bulk
149 red illumination +lincomycin 0.24 >More info 0.51 >More info red illumination -lincomycin Original data GEO bulk
150 sfr3 cold -0.64 >More info -0.10 >More info WT-cold aerial tissues Original data GEO bulk
151 WT Atum 1h 0.59 >More info 0.13 >More info WT 0h Leaf tissue Original data GEO bulk
152 mpk6-ko H2O 4h 0.62 >More info 0.10 >More info Col-0 H2O 4h Original data GEO bulk
153 Salt Stress 24 h (root) -0.51 >More info -0.21 >More info Stress mock 24 h (root) Original data Stress treatments
154 Elevated CO2 LIMITING N DAY -0.22 >More info -0.50 >More info Elevated CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
155 rdr6-15 0.18 >More info 0.54 >More info Col-0 plant inflorescence Original data
156 tcp13/+ tcp14/+ 0.20 >More info 0.51 >More info WT inflorescences Original data GEO bulk
157 bri1-116 -0.04 >More info 0.73 >More info Col seedling Original data GEO bulk
158 C2H2 ZF TDNA mutant -0.56 >More info -0.12 >More info Col-WT mature pollen Original data GEO bulk
159 Cocultivation 8 hrs leaf 0.58 >More info 0.09 >More info Mock cocultivation 8 hrs leaf Leaf Original data
160 35S:VND7-VP16-GR+CHX -0.06 >More info -0.60 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
161 atr zebularine -0.51 >More info -0.13 >More info WT zebularine shoot apical meristem Original data
162 Leafminer damaged seedlings 0.08 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
163 bZIP TDNA mutant -0.53 >More info -0.08 >More info Col-WT mature pollen Original data GEO bulk
164 Laer pretreat GA Flg22 1h -0.10 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
165 CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold -0.54 >More info -0.06 >More info CSP1 immonoprecipitated RNA 35S:HF-RPL18 12h cold (4C) rosettes Original data GEO bulk
166 siliques AtHb1 control 0.07 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
167 SQ8 roots 2hr KNO3 nitrogen -0.50 >More info -0.08 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
168 opr3 OPDA 2 h -0.09 >More info 0.65 >More info opr3 0 h Original data GEO bulk
169 2hr transitory KNO3 EPR cell -0.61 >More info 0.06 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
170 3m.KCl -0.54 >More info 0.00 >More info To. KCl 14 day old Roots Original data GEO bulk
171 Col leaf scrape 5 dpi -0.50 >More info -0.04 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
172 cngc19 0.64 >More info -0.10 >More info Col-0 root Original data GEO bulk
173 WT Atum 2h 0.55 >More info -0.02 >More info WT 0h Leaf tissue Original data GEO bulk
174 Ba1 UV 0.50 >More info 0.01 >More info Ba1 mock UV seedling Original data
175 2hr continuous KNO3 LRCR cell -0.54 >More info 0.03 >More info 2hr KCl control LRCR cell Lateral Root Cap root cells Original data GEO bulk
176 WT NAA 2h 0.53 >More info -0.03 >More info WT 0h Leaf tissue Original data GEO bulk
177 6m.KCl -0.53 >More info 0.04 >More info To. KCl 14 day old Roots Original data GEO bulk
178 6m.KNO3 -0.53 >More info 0.04 >More info To. KNO3 14 day old Roots Original data GEO bulk
179 cngc1-3 0.64 >More info -0.15 >More info Col-0 root Original data GEO bulk
180 tcp13 -0.07 >More info 0.55 >More info WT inflorescences Original data GEO bulk
181 CCA1-ox 6am non-polysomal -0.04 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
182 35S::ERF104 H2O 4h 0.58 >More info -0.11 >More info Col-0 H2O 4h Original data GEO bulk
183 erf104-ko H2O 4h 0.58 >More info -0.11 >More info Col-0 H2O 4h Original data GEO bulk
184 Col0-PsmES4326-24hpi -0.17 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
185 2hr continuous KNO3 PeR cell -0.52 >More info 0.14 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
186 IAA7mII over-expressor IAA Treated -0.41 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk