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Module-based correlation network(MCN) centered on Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (8 dpg)
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Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (8 dpg)
Correlation to
Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (8 dpg)
Control Experiment Genotype Treatment Tissue Link to
original data
Experimental
Category
Data set
Details
1 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (8 dpg)
1.00 >More info 1.00 >More info Control for tissue data Original data GEO bulk
2 Root from tip to 130 mm proximal to tip (cut
8dpg)
0.99 >More info 0.99 >More info Control for tissue data Original data GEO bulk
3 Root from tip to 130 mm proximal to tip (cut
4dpg)
0.97 >More info 0.97 >More info Control for tissue data Original data GEO bulk
4 Regenerating Stump Root Tip Cut 130 mm andn Recut
22 hrs Taking 70 mm of Stump (4dpg)
0.96 >More info 0.95 >More info Control for tissue data Original data GEO bulk
5 Regenerating Stump Root Tip Cut 130 mm andn Recut
13 hrs Taking 70 mm of Stump (4dpg)
0.95 >More info 0.95 >More info Control for tissue data Original data GEO bulk
6 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (4dpg)
0.95 >More info 0.95 >More info Control for tissue data Original data GEO bulk
7 Regenerating Stump Root Tip Cut 130 mm andn Recut
5 hrs Taking 70 mm of Stump (4dpg)
0.95 >More info 0.95 >More info Control for tissue data Original data GEO bulk
8 Section Root from70 mm to 340 mm harvested
immediately
0.93 >More info 0.93 >More info Control for tissue data Original data GEO bulk
9 Atape2 low light 0.93 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
10 seed germinating in countinuous light 6 h SL 0.91 >More info 0.90 >More info Control for tissue data seed Original data GEO bulk
11 LAS 0.91 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
12 HDG4 0.91 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
13 Shoot apex vegetative 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
14 Shoot apex transition (before bolting) 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
15 torpedo-basal 0.91 >More info 0.90 >More info Control for tissue data torpedo embryo basal tissue Original data GEO bulk
16 Callus 0.91 >More info 0.89 >More info Control for tissue data callus Original data GEO bulk
17 KAN1 0.91 >More info 0.89 >More info Control for tissue data shoot apical meristem Original data GEO bulk
18 lec1-1 Mature Green Seed 0.91 >More info 0.89 >More info Control for tissue data Original data GEO bulk
19 Cells whole embryo 0.90 >More info 0.90 >More info Control for tissue data whole embryo Original data
20 HMG 0.91 >More info 0.89 >More info Control for tissue data shoot apical meristem Original data GEO bulk
21 seed germinating in countinuous light 12 h SL 0.91 >More info 0.89 >More info Control for tissue data seed Original data GEO bulk
22 lec1-1 24h post-fertilization Seed 0.90 >More info 0.89 >More info Control for tissue data Original data GEO bulk
23 ovule 0.90 >More info 0.89 >More info Control for tissue data ovule Original data GEO bulk
24 seed germinating in countinuous light 48 h SL 0.91 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
25 Ambient CO2 leaf primordia 0.90 >More info 0.88 >More info Control for tissue data leaf primordia Original data
26 seed germinating in countinuous light 1 h SL 0.90 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
27 Inflorescences ler 0.90 >More info 0.88 >More info Control for tissue data inflorescences Original data GEO bulk
28 Carpels stage15 0.90 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
29 Shoot apex vegetative &Young leaves 0.90 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
30 Mature roots 0.90 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
31 Hypocotyl 0.90 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
32 lec1-1 Post-Mature Green Seed 0.90 >More info 0.88 >More info Control for tissue data Original data GEO bulk
33 Bud 0.90 >More info 0.87 >More info Control for tissue data pollen grains and tubes Original data
34 lec1-1 Globular Stage Seed 0.90 >More info 0.87 >More info Control for tissue data Original data GEO bulk
35 seed during stratification 48 h S 0.89 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
36 Rosette leaf No12 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
37 lec1-1 Cotyledon Stage Seed 0.90 >More info 0.87 >More info Control for tissue data Original data GEO bulk
38 Nuclei proembryo 0.89 >More info 0.88 >More info Control for tissue data proembryo Original data
39 Flower (stage12) 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
40 seedling 0.90 >More info 0.87 >More info Control for tissue data seedling Original data GEO bulk
41 Anther 0.89 >More info 0.88 >More info Control for tissue data anther Original data
42 cortex 0.88 >More info 0.88 >More info Control for tissue data cortex Original data GEO bulk
43 Pedicels stage15 0.89 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
44 phloem sieve cells and companion cells 0.89 >More info 0.87 >More info Control for tissue data phloem Original data GEO bulk
45 WT cotyledons 0.90 >More info 0.86 >More info Control for tissue data cotyledons Original data
46 AtHB8 0.89 >More info 0.87 >More info Control for tissue data shoot apical meristem Original data GEO bulk
47 S17 0.89 >More info 0.87 >More info Control for tissue data shoot apical meristem Original data GEO bulk
48 Apex 5DAS 0.89 >More info 0.86 >More info Control for tissue data Original data GEO bulk
49 Stem 1st node 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
50 root hair 0.88 >More info 0.87 >More info Control for tissue data root hairs Original data GEO bulk
51 Nuclei suspensor 0.88 >More info 0.87 >More info Control for tissue data suspensor Original data
52 lateral nectary stage 11-12 0.89 >More info 0.86 >More info Control for tissue data lateral nectaries Original data GEO bulk
53 Petiol (leaf7) 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
54 torpedo-meristem 0.87 >More info 0.88 >More info Control for tissue data torpedo embryo meristem tissue Original data GEO bulk
55 flower-buds 0.89 >More info 0.86 >More info Control for tissue data Original data GEO bulk
56 in vivo pollen tube 0.89 >More info 0.86 >More info Control for tissue data pollen tube Original data GEO bulk
57 Proximalhalf (leaf7) 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
58 Seeds stage3 with siliques 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
59 Expanding leaf 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
60 unpollinated pistil 0.89 >More info 0.86 >More info Control for tissue data pistil Original data GEO bulk
61 heart-stage-root 0.87 >More info 0.88 >More info Control for tissue data Original data GEO bulk
62 globular-apical 0.87 >More info 0.88 >More info Control for tissue data globular embryo apical tissue Original data GEO bulk
63 globular-basal 0.87 >More info 0.88 >More info Control for tissue data globular embryo basal tissue Original data GEO bulk
64 siliques 0.89 >More info 0.86 >More info Control for tissue data Original data GEO bulk
65 flowers 0.89 >More info 0.86 >More info Control for tissue data Original data GEO bulk
66 Ambient CO2 expanding leaf 0.89 >More info 0.86 >More info Control for tissue data expanding leaf Original data
67 Flowers stage15 0.88 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
68 silique 0.89 >More info 0.85 >More info Control for tissue data silique Original data GEO bulk
69 Apex 14DAS 0.89 >More info 0.85 >More info Control for tissue data Original data GEO bulk
70 mature endodermis glcal 0.88 >More info 0.85 >More info Control for tissue data endodermis Original data GEO bulk
71 Cotyledons 0.88 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
72 Leaf 0.88 >More info 0.85 >More info Control for tissue data leaf Original data GEO bulk
73 Petals stage15 0.87 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
74 differentiating xylem 0.87 >More info 0.86 >More info Control for tissue data xylem Original data GEO bulk
75 whole seeds 0.88 >More info 0.85 >More info Control for tissue data Original data GEO bulk
76 median nectary stage 14-15 0.87 >More info 0.86 >More info Control for tissue data median nectaries Original data GEO bulk
77 micropylar endosperm heart stage 0.87 >More info 0.86 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
78 ML (Mature leaves) 35DAS 0.89 >More info 0.84 >More info Control for tissue data Original data GEO bulk
79 EL (leaves 1-2) 14DAS 0.88 >More info 0.85 >More info Control for tissue data Original data GEO bulk
80 lateral nectary stage 14-15 0.87 >More info 0.86 >More info Control for tissue data lateral nectaries Original data GEO bulk
81 Rosette leaf No2 0.88 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
82 Col dryseed 0.88 >More info 0.85 >More info Control for tissue data dry seeds Original data
83 seed freshly harvested H 0.88 >More info 0.85 >More info Control for tissue data seed Original data GEO bulk
84 Ambient CO2 fully expanded leaf 0.88 >More info 0.85 >More info Control for tissue data fully expanded leaf Original data
85 embryo proper heart stage 0.87 >More info 0.86 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
86 heart-stage-cotyledon 0.86 >More info 0.87 >More info Control for tissue data Original data GEO bulk
87 embryo proper 0.87 >More info 0.86 >More info Control for tissue data Original data GEO bulk
88 Seeds stage8 w/o siliques 0.88 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
89 Distal half (leaf7) 0.88 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
90 peripheral endosperm heart stage 0.87 >More info 0.85 >More info Control for tissue data peripheral endosperm captured by LCM Original data GEO bulk
91 Stem 2ndinternode 0.88 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
92 flower 0.88 >More info 0.84 >More info Control for tissue data flower Original data GEO bulk
93 QC 0.87 >More info 0.85 >More info Control for tissue data FACS-sorted protoplasts from roots Original data
94 leaf 0.88 >More info 0.84 >More info Control for tissue data leaf Original data GEO bulk
95 Sepals stage15 0.87 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
96 seed during stratification 12 h S 0.88 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
97 NAA +AA -0.87 >More info -0.85 >More info NAA -AA B5 media supplemented with 4.5 µM NAA and treated with AA Original data
98 dry seed 0 h 0.88 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
99 Senescing leaf 0.87 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
100 seed during stratification 1 h S 0.88 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
101 Cauline leaves 0.87 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
102 peripheral endosperm mature green 0.87 >More info 0.84 >More info Control for tissue data peripherial endosperm captured by LCM Original data GEO bulk
103 pericycle control 0.86 >More info 0.85 >More info Control for tissue data mock pericycle Original data GEO bulk
104 embryo proper mature green 0.87 >More info 0.84 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
105 chalazal endosperm 0.87 >More info 0.84 >More info Control for tissue data Original data GEO bulk
106 seed coat heart stage 0.87 >More info 0.84 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
107 whole seeds mature green 0.87 >More info 0.84 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
108 chalazal endosperm mature green 0.86 >More info 0.84 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
109 Stamen stage15 0.86 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
110 B5 +AA -0.87 >More info -0.83 >More info B5 -AA B5 media and treated with AA Original data
111 epidermis control 0.86 >More info 0.84 >More info Control for tissue data mock epidermis Original data GEO bulk
112 peripherial endosperm 0.86 >More info 0.84 >More info Control for tissue data Original data GEO bulk
113 whole seeds heart stage 0.86 >More info 0.84 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
114 micropylar endosperm mature green 0.87 >More info 0.83 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
115 torpedo-root 0.85 >More info 0.84 >More info Control for tissue data Original data GEO bulk
116 Mature pollen 0.86 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
117 intact root control 0.85 >More info 0.84 >More info Control for tissue data mock whole root Original data GEO bulk
118 chalazal seed coat 0.86 >More info 0.83 >More info Control for tissue data Original data GEO bulk
119 seed coat 0.86 >More info 0.83 >More info Control for tissue data Original data GEO bulk
120 seed coat mature green 0.86 >More info 0.82 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
121 chalazal endosperm heart stage 0.85 >More info 0.82 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
122 chalazal seed coat mature green 0.85 >More info 0.82 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
123 Emwa1 inoculated psk 3 dpi 0.86 >More info 0.80 >More info Emwa1 inoculated WT 3 dpi Cotyledons Original data GEO bulk
124 pskr1-5 0.86 >More info 0.80 >More info wild type Cotyledons Original data GEO bulk
125 pollen 0.83 >More info 0.83 >More info Control for tissue data pollen grain Original data GEO bulk
126 in vitro pollen tube 0.84 >More info 0.82 >More info Control for tissue data pollen tube Original data
127 seed germinating in countinuous light 24h SL 0.91 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
128 L17 phyA line -0.83 >More info -0.74 >More info WT seedling Original data GEO bulk
129 Shoot apex inflorescence (after bolting) 0.91 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
130 Salicylic Acid 3 h -0.86 >More info -0.63 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
131 chalazal seed coat heart stage 0.86 >More info 0.35 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
132 2h KNO3 Whole root 0.71 >More info 0.43 >More info 2h KCl control Whole root Whole root Original data GEO bulk
133 Starch sheath 2 days NAA 0.68 >More info 0.34 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
134 torpedo-apical 0.89 >More info 0.11 >More info Control for tissue data torpedo embryo apical tissue Original data GEO bulk
135 Nuclei whole embryo 0.89 >More info 0.10 >More info Control for tissue data whole embryo Original data
136 Starch sheath 2 days MS incubation 0.60 >More info 0.36 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
137 Heat shock optimum 0.31 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
138 columella control 0.87 >More info 0.04 >More info Control for tissue data mock columella Original data GEO bulk
139 erf104-ko Flg22 4h -0.66 >More info -0.25 >More info erf104-ko H2O 4h Original data GEO bulk
140 red illumination +lincomycin 0.31 >More info 0.57 >More info red illumination -lincomycin Original data GEO bulk
141 Col BTH 0.17 >More info 0.67 >More info Col rosettes Original data GEO bulk
142 root longitudinal zone-4 low sulfur 0.31 >More info 0.51 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
143 Starch sheath 5 days MS incubation 0.57 >More info 0.25 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
144 mpk6-ko H2O 4h 0.63 >More info 0.17 >More info Col-0 H2O 4h Original data GEO bulk
145 rdr6-15 0.17 >More info 0.62 >More info Col-0 plant inflorescence Original data
146 WT Atum 1h 0.58 >More info 0.20 >More info WT 0h Leaf tissue Original data GEO bulk
147 torpedo-cotyledon 0.86 >More info -0.09 >More info Control for tissue data Original data GEO bulk
148 HSP90 Reduced RNAi-A3 -0.62 >More info -0.14 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
149 ptpks2 0.53 >More info 0.22 >More info Col-WT leaves Original data GEO bulk
150 sfr3 cold -0.63 >More info -0.11 >More info WT-cold aerial tissues Original data GEO bulk
151 bri1-116 -0.00 >More info 0.73 >More info Col seedling Original data GEO bulk
152 met1-3 fourth-selfed generation -0.20 >More info -0.52 >More info Col WT leaf Original data GEO bulk
153 C2H2 ZF TDNA mutant -0.52 >More info -0.18 >More info Col-WT mature pollen Original data GEO bulk
154 root epidermis and lateral root cap -S 0.19 >More info 0.50 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
155 3m.KCl -0.55 >More info -0.12 >More info To. KCl 14 day old Roots Original data GEO bulk
156 WT roots - Fe -0.12 >More info -0.53 >More info WT roots + Fe Roots Original data GEO bulk
157 atr zebularine -0.50 >More info -0.13 >More info WT zebularine shoot apical meristem Original data
158 siliques AtHb1 control 0.11 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
159 Cocultivation 8 hrs leaf 0.55 >More info 0.07 >More info Mock cocultivation 8 hrs leaf Leaf Original data
160 bZIP TDNA mutant -0.50 >More info -0.12 >More info Col-WT mature pollen Original data GEO bulk
161 WT Atum 2h 0.55 >More info 0.06 >More info WT 0h Leaf tissue Original data GEO bulk
162 Leafminer damaged seedlings 0.05 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
163 6m.KNO3 -0.53 >More info -0.07 >More info To. KNO3 14 day old Roots Original data GEO bulk
164 cngc19 0.63 >More info -0.03 >More info Col-0 root Original data GEO bulk
165 6m.KCl -0.52 >More info -0.07 >More info To. KCl 14 day old Roots Original data GEO bulk
166 Laer pretreat GA Flg22 1h -0.12 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
167 cat2-2; 8h switch to ambient CO2 concentrations; 0.05 >More info 0.53 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
168 CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold -0.50 >More info -0.05 >More info CSP1 immonoprecipitated RNA 35S:HF-RPL18 12h cold (4C) rosettes Original data GEO bulk
169 35S:VND7-VP16-GR+CHX -0.04 >More info -0.51 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
170 2hr transitory KNO3 EPR cell -0.58 >More info 0.03 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
171 tcp13 -0.07 >More info 0.58 >More info WT inflorescences Original data GEO bulk
172 root longitudinal zone-3 -Fe -0.00 >More info -0.50 >More info root longitudinal zone-3 standard Original data GEO bulk
173 cngc1-3 0.64 >More info -0.16 >More info Col-0 root Original data GEO bulk
174 35S::ERF104 H2O 4h 0.58 >More info -0.10 >More info Col-0 H2O 4h Original data GEO bulk
175 erf104-ko H2O 4h 0.59 >More info -0.11 >More info Col-0 H2O 4h Original data GEO bulk
176 CCA1-ox 6am non-polysomal -0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
177 2hr continuous KNO3 PeR cell -0.52 >More info 0.06 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
178 opr3 OPDA 2 h -0.11 >More info 0.57 >More info opr3 0 h Original data GEO bulk
179 WT NAA 2h 0.52 >More info -0.07 >More info WT 0h Leaf tissue Original data GEO bulk
180 2hr continuous KNO3 LRCR cell -0.52 >More info 0.09 >More info 2hr KCl control LRCR cell Lateral Root Cap root cells Original data GEO bulk
181 Col0-PsmES4326-24hpi -0.18 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
182 IAA7mII over-expressor IAA Treated -0.39 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk