4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root epidermis and lateral root cap -S
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Score Experiment Correlation from
root epidermis and lateral root cap -S		 Correlation to
root epidermis and lateral root cap -S		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root epidermis and lateral root cap -S 1.00 >More info 1.00 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
2 root stele -S 0.86 >More info 0.80 >More info root stele pH5.7 Original data GEO bulk
3 low CO2 + light -0.72 >More info -0.72 >More info normal CO2 + light Original data GEO bulk
4 root longitudinal zone-1 low sulfur 0.71 >More info 0.73 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
5 SCR-GR Time 1H Dex -0.69 >More info -0.72 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
6 root cells epidermis 140mM NaCl 32 hours 0.72 >More info 0.63 >More info root cells epidermis standard 1 hour root cells epidermis Original data
7 root cells epidermis 140mM NaCl 3 hours 0.71 >More info 0.64 >More info root cells epidermis standard 1 hour root cells epidermis Original data
8 SHR-GR Time 12H Dex 0.73 >More info 0.62 >More info SHR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
9 root cells epidermis 140mM NaCl 8 hours 0.72 >More info 0.62 >More info root cells epidermis standard 1 hour root cells epidermis Original data
10 root cells epidermis 140mM NaCl 48 hours 0.70 >More info 0.57 >More info root cells epidermis standard 1 hour root cells epidermis Original data
11 low CO2 + dark -0.70 >More info -0.57 >More info normal CO2 + light Original data GEO bulk
12 root epidermis and lateral root cap pH4.6 0.64 >More info 0.63 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
13 SHR-GR Time 6H Dex 0.55 >More info 0.71 >More info SHR-GR Time 0H Dex Dex media for 6 hours Original data GEO bulk
14 root cells epidermis 140mM NaCl 20 hours 0.70 >More info 0.55 >More info root cells epidermis standard 1 hour root cells epidermis Original data
15 root cells epidermis 140mM NaCl 1 hour 0.68 >More info 0.57 >More info root cells epidermis standard 1 hour root cells epidermis Original data
16 root cells stele 140mM NaCl 48 hours 0.70 >More info 0.54 >More info root cells stele standard 1 hour root cells stele Original data
17 21h-DC3000 hrpA 0.66 >More info 0.58 >More info 21h-DC3000 leaves Original data GEO bulk
18 Inflorescences Trp1 0.53 >More info 0.69 >More info Inflorescences ler inflorescences Original data GEO bulk
19 21h-DC3000 avrRpm1 0.57 >More info 0.65 >More info 21h-DC3000 leaves Original data GEO bulk
20 root longitudinal zone-3 low sulfur 0.71 >More info 0.50 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
21 line J1551-5 days control + 2 days salt s 0.56 >More info 0.64 >More info line J1551-7 days-control Original data
22 stele auxin 0.65 >More info 0.55 >More info stele control 5 uM indole-3-acetic acid stele Original data GEO bulk
23 hira-protoplast 0.67 >More info 0.52 >More info WT-protoplast protoplast Original data
24 OXUPB1-2 meristematic zone 0.61 >More info 0.58 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
25 root cells stele 140mM NaCl 8 hours 0.62 >More info 0.56 >More info root cells stele standard 1 hour root cells stele Original data
26 tfl1-1-16ºC -0.65 >More info -0.53 >More info WT-16ºC Original data GEO bulk
27 WT (Col) glucose 0.66 >More info 0.51 >More info WT (Col) glucose seedlings Original data GEO bulk
28 Mutant arf2-6 (IAA) 0.59 >More info 0.58 >More info Col (IAA) Original data GEO bulk
29 Col ozone 3h -0.58 >More info -0.59 >More info Col clean-air 3h ozone Original data GEO bulk
30 ISOXABEN 0.68 >More info 0.49 >More info CON 0.1 mM ISOXABEN Original data GEO bulk
31 SHR-GR Time 1H Dex -0.72 >More info -0.44 >More info SHR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
32 stele pSHR 0h BL 0.71 >More info 0.45 >More info WR 35S 0h BL brassinosteroid root Original data
33 ABA JA 24h -0.58 >More info -0.58 >More info EtOH 24h 24hr Original data GEO bulk
34 Col-0 (t-zeatin 3 h) 0.57 >More info 0.58 >More info Col-0 Original data Cytokinin treatment of seedlings
35 4h decapitation 0.70 >More info 0.45 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
36 Shoot apex inflorescence (after bolting) 0.49 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
37 root cells stele 140mM NaCl 3 hours 0.54 >More info 0.59 >More info root cells stele standard 1 hour root cells stele Original data
38 root control pSHR 0.55 >More info 0.57 >More info root control total control root Original data GEO bulk
39 root stele pH4.6 0.63 >More info 0.49 >More info root stele pH5.7 Original data GEO bulk
40 WT Shoot-Pi -0.66 >More info -0.46 >More info WT Shoot+Pi shoots Original data GEO bulk
41 Chemically 0.51 >More info 0.61 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
42 35S::MBF1c -0.53 >More info -0.58 >More info control Original data GEO bulk
43 root cells stele 140mM NaCl 32 hours 0.61 >More info 0.49 >More info root cells stele standard 1 hour root cells stele Original data
44 35:SUB1C -0.57 >More info -0.53 >More info WT whole seedling Original data GEO bulk
45 root cells cortex 140mM NaCl 32 hours 0.70 >More info 0.40 >More info root cells cortex standard 1 hour root cells cortex Original data
46 detached inflorescences 24h -0.68 >More info -0.42 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
47 2hr continuous KNO3 SR cell 0.53 >More info 0.57 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
48 seed germinating in countinuous light 24h SL 0.43 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
49 root cells endodermis 140mM NaCl 48 hours 0.66 >More info 0.43 >More info root cells endodermis standard 1 hour root cells endodermis Original data
50 arr-dmso-sample 0.52 >More info 0.57 >More info Wt-dmso-sample seedling Original data
51 root cells endodermis 140mM NaCl 20 hours 0.69 >More info 0.40 >More info root cells endodermis standard 1 hour root cells endodermis Original data
52 bak1-3 +Pep2 10h -0.63 >More info -0.45 >More info WT +Pep2 10h Pep2 Original data GEO bulk
53 root cells stele 140mM NaCl 1 hour 0.52 >More info 0.56 >More info root cells stele standard 1 hour root cells stele Original data
54 TA induced -0.59 >More info -0.49 >More info Methanol TA Suspension cells Original data GEO bulk
55 root cells endodermis 140mM NaCl 32 hours 0.67 >More info 0.41 >More info root cells endodermis standard 1 hour root cells endodermis Original data
56 root longitudinal zone-3 pH 4.6 0.40 >More info 0.68 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
57 bZIP1ko mutant N+Light+ -0.56 >More info -0.51 >More info WT-sib N+Light+ whole plant Original data GEO bulk
58 apl -0.56 >More info -0.51 >More info WT phloem Original data
59 stn7-1 0.60 >More info 0.47 >More info Col-0 rosette leaves Original data GEO bulk
60 sfr6 drought 0.58 >More info 0.49 >More info WT drought All aerial tissue Original data GEO bulk
61 root longitudinal zone-2 low sulfur 0.55 >More info 0.51 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
62 WT AntimycinA 3h -0.64 >More info -0.42 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
63 root cells stele 140mM NaCl 20 hours 0.56 >More info 0.49 >More info root cells stele standard 1 hour root cells stele Original data
64 2hr continuous KNO3 and MSX and Gln PeR cell 0.54 >More info 0.51 >More info 2hr continuous KCl and MSX control PeR cell Pericycle root cells Original data GEO bulk
65 root callus inducing medium 96 h 0.72 >More info 0.33 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
66 CMV-WT -0.60 >More info -0.44 >More info Mock-At Aerial tissues Original data GEO bulk
67 root endodermis -S 0.66 >More info 0.38 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
68 GST 4 h (leaf) -0.30 >More info -0.74 >More info Mock 4 h (leaf) Original data Elicitor treatments
69 Heat shock optimum 0.39 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
70 2hr continuous KCl and MSX control PeR cell -0.62 >More info -0.41 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
71 Col leaves 120h LT 0.61 >More info 0.41 >More info Col leaves 0h LT 12h 9-11th adult leaves Original data
72 tor mutant glucose -0.61 >More info -0.41 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
73 embryo proper heart stage 0.60 >More info 0.42 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
74 rosette leaves fdh -0.58 >More info -0.43 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
75 dcl3-1 -0.63 >More info -0.38 >More info Col-0 Original data GEO bulk
76 pericycle auxin 0.48 >More info 0.53 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
77 npr1-1 SA 0.64 >More info 0.36 >More info Col-0 SA complete seedling Original data
78 P35S:rGRF1 0.63 >More info 0.37 >More info Col-0 Original data GEO bulk
79 inhibitor B Treated 0.55 >More info 0.45 >More info Negative Control Original data GEO bulk
80 red illumination +lincomycin 0.37 >More info 0.63 >More info red illumination -lincomycin Original data GEO bulk
81 columella auxin 0.41 >More info 0.59 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
82 aox1a:rpoTmp MLD stressed 0.62 >More info 0.37 >More info WT(Col0) MLD stressed (control aox1a:rpoTmp) leaf Original data
83 tga1 tga4 2h KCl -0.62 >More info -0.37 >More info Col 0 2h KCl 5 mM KCl root Original data GEO bulk
84 Full C2 T2 -0.51 >More info -0.48 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
85 npr1 sni1 ssn2 0.59 >More info 0.40 >More info npr1 sni1 water water seedling Original data GEO bulk
86 efr-1 +elf18 10h 0.60 >More info 0.39 >More info WT +elf18 10h elf18 Original data GEO bulk
87 edr1 36 h powdery mildew -0.63 >More info -0.36 >More info Col-0 36 h powdery mildew Original data GEO bulk
88 arp6-10 12 ºC 0.53 >More info 0.46 >More info Col-0 12 ºC whole seedlings Original data GEO bulk
89 epidermis auxin 0.40 >More info 0.59 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
90 WT 30μM phosphate 8 hours. 0.44 >More info 0.55 >More info WT control (not supplemented). Original data
91 pepr1-1 Pepr2-3 +Pep2 2h 0.56 >More info 0.42 >More info WT +Pep2 2h Pep2 Original data GEO bulk
92 Col-7 Sucrose 0.64 >More info 0.34 >More info col-7 Original data GEO bulk
93 embryo proper linear-cotyledon 0.55 >More info 0.43 >More info whole seeds linear-cotyledon Original data GEO bulk
94 SA 4mM -0.23 >More info -0.75 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
95 dark +H2O2 0.47 >More info 0.51 >More info dark 5 mM H2O2 seedling Original data GEO bulk
96 8h-DC3000 avrRpm1 -0.56 >More info -0.41 >More info 8h-DC3000 leaves Original data GEO bulk
97 Differentiation 36h 0.62 >More info 0.34 >More info Differentiation 0h leaves Original data
98 SCR-GR Time 6H Dex -0.71 >More info -0.25 >More info SCR-GR Time 0H Dex Dex media for 6 hours Original data GEO bulk
99 bri1-116 0.23 >More info 0.73 >More info Col seedling Original data GEO bulk
100 miR396b overexpressor -0.46 >More info -0.50 >More info Col-0 vegetative apices together with the leaf primordia Original data
101 Elevated CO2 expanding leaf -0.56 >More info -0.39 >More info Ambient CO2 expanding leaf expanding leaf Original data
102 WT drought -0.59 >More info -0.36 >More info WT control All aerial tissue Original data GEO bulk
103 cs26 short-day 0.53 >More info 0.42 >More info Leaves-WT-SD leaf Original data GEO bulk
104 ATR1 OE -0.59 >More info -0.36 >More info WT for ATR1/MYB51 Original data GEO bulk
105 Col-Luc WT 3h antimycin A -0.58 >More info -0.37 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
106 root hypoxia pSHR 0.35 >More info 0.60 >More info root hypoxia total hypoxia root Original data GEO bulk
107 Ovary 0.66 >More info 0.28 >More info Seedling Original data GEO bulk
108 Differentiation 24h 0.66 >More info 0.28 >More info Differentiation 0h leaves Original data
109 gh3.5D uninoculated 0.52 >More info 0.42 >More info Col-0 48 hpi Original data GEO bulk
110 Kas2 roots 2hr KCl control 0.50 >More info 0.44 >More info Col0 roots 2hr KCl control root Original data GEO bulk
111 Shoot submergence 24h -0.66 >More info -0.27 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
112 seedling h S Exp 0.57 >More info 0.36 >More info seedling -S Exp seedling Original data
113 AtLysM RLK1 mutant chitooctaose 0.52 >More info 0.41 >More info WT chitooctaose Original data GEO bulk
114 TaFLS overexpression line (OE1) 0.62 >More info 0.31 >More info Col-0 Rosette leaves Original data
115 vtc2 day 7 induction 0.60 >More info 0.33 >More info WT day 7 induction day 7 induction of somatic embryogenesis Original data GEO bulk
116 2hr KCl control SR cell 0.43 >More info 0.50 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
117 dorn1-1 Root 100 mM ATP 30 min 0.53 >More info 0.39 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
118 BAM7 Ox untreated 0.54 >More info 0.38 >More info WT untreated none shoot Original data
119 AsAKiin11 T2 -0.52 >More info -0.40 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
120 Roots Cd 0.41 >More info 0.51 >More info Roots control Cd Root Original data GEO bulk
121 bbx24 in Simulated Shade -0.33 >More info -0.59 >More info WT in simulated shade shade seedling Original data
122 axr2 0.64 >More info 0.27 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
123 root callus inducing medium 48 h 0.68 >More info 0.23 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
124 edr1 18 h powdery mildew -0.56 >More info -0.35 >More info Col-0 18 h powdery mildew Original data GEO bulk
125 ABA -0.62 >More info -0.29 >More info control Original data GEO bulk
126 WT polysome 0.50 >More info 0.41 >More info WT non-polysome Original data GEO bulk
127 Starch sheath 2 days MS incubation 0.57 >More info 0.34 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
128 toc1-1-81hr 0.32 >More info 0.59 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
129 root cells cortex 140mM NaCl 1 hour 0.51 >More info 0.39 >More info root cells cortex standard 1 hour root cells cortex Original data
130 TAMM27 roots 2hr KNO3 nitrogen 0.51 >More info 0.39 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
131 phyABDE Rc50 0.53 >More info 0.37 >More info phyABDE Dark red light whole seedling Original data GEO bulk
132 WT+chitooctaose -0.50 >More info -0.40 >More info WT+water chitooctaose seedlings Original data GEO bulk
133 embryo proper pre-globular 0.60 >More info 0.30 >More info whole seed sections pre-globular Original data GEO bulk
134 noa1-2 0.56 >More info 0.33 >More info Col-0 whole seedlings Original data GEO bulk
135 root cells endodermis 140mM NaCl 1 hour 0.50 >More info 0.39 >More info root cells endodermis standard 1 hour root cells endodermis Original data
136 T101D 10mM NH4NO3 -0.53 >More info -0.36 >More info col 10mM NH4NO3 Root Original data
137 OXUPB1-2 elongation zone 0.50 >More info 0.39 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
138 DUO1 induced 6h 0.39 >More info 0.50 >More info 6hr-not-induced whole plant Original data GEO bulk
139 phr1 Root-Pi -0.60 >More info -0.29 >More info WT Root+Pi roots Original data GEO bulk
140 ahg3-1 0.58 >More info 0.31 >More info ABA control Original data GEO bulk
141 ABA+DMTU -0.58 >More info -0.31 >More info control Original data GEO bulk
142 anac017-2 AntimycinA 3h 0.55 >More info 0.33 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
143 GST-overexpression seedlings control -0.55 >More info -0.33 >More info WT seedlings control Seedlings Original data
144 GiantCell Root 0.61 >More info 0.27 >More info Control Root laser captured giant cells Original data GEO bulk
145 Shoot dark control 24h -0.63 >More info -0.25 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
146 col 24h4c set4 0.50 >More info 0.38 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
147 +1.6 mM Tween 20 1 h. -0.53 >More info -0.35 >More info +distilled water 1 h. Original data GEO bulk
148 pepr1-1 Pepr2-3 +Pep2 10h 0.59 >More info 0.29 >More info WT +Pep2 10h Pep2 Original data GEO bulk
149 WT in -N -0.58 >More info -0.30 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
150 HDG4 0.57 >More info 0.31 >More info Control for tissue data shoot apical meristem Original data GEO bulk
151 Differentiation 48h 0.57 >More info 0.31 >More info Differentiation 0h leaves Original data
152 LAS 0.56 >More info 0.31 >More info Control for tissue data shoot apical meristem Original data GEO bulk
153 peripheral endosperm heart stage 0.53 >More info 0.34 >More info Control for tissue data peripheral endosperm captured by LCM Original data GEO bulk
154 Col-0 C2H4 24h -0.55 >More info -0.32 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
155 seedling 6h after Gamma WT -0.50 >More info -0.37 >More info seedling day 1 unirradiated WT 6h Original data
156 vtc2 mature somatic embryo -0.50 >More info -0.37 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
157 roots IAA 0.52 >More info 0.35 >More info roots mock Original data GEO bulk
158 WT light 0.57 >More info 0.30 >More info WT dark Original data GEO bulk
159 aux1 mutant roots air -0.58 >More info -0.29 >More info roots IAA Original data GEO bulk
160 6h volatiles Sp. HRO-C48 -0.54 >More info -0.32 >More info 6h untreated whole seedling Original data GEO bulk
161 4d red light grown hmr-5 seedlings -0.52 >More info -0.34 >More info 4d red light grown WT(Col-0) seedlings Original data
162 Col-0 9 hpi A. brassicicola -0.33 >More info -0.53 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
163 WT H2O2 3h -0.51 >More info -0.35 >More info WT water 3h 3h_H2O2 Original data GEO bulk
164 root callus inducing medium 24h 0.62 >More info 0.24 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
165 root stele 40 mM NaCls -0.57 >More info -0.29 >More info root stele Original data GEO bulk
166 phr1 phl1 Shoot-Pi 0.55 >More info 0.30 >More info WT Shoot-Pi shoots Original data GEO bulk
167 embryo proper 0.52 >More info 0.33 >More info Control for tissue data Original data GEO bulk
168 M6PR transgenic leaf 100mM NaCl -0.59 >More info -0.26 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
169 micropylar endosperm heart stage 0.52 >More info 0.32 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
170 downy mildew cotyledons late stage -0.55 >More info -0.29 >More info mock inoculated Cotyledons Original data GEO bulk
171 HopZ1a treated ulp1c ulp1d -0.52 >More info -0.32 >More info col Original data GEO bulk
172 Apex mir-3TCP 14DAS 0.56 >More info 0.28 >More info Apex Col 14DAS Original data GEO bulk
173 penta mutant (higher order mutant) -0.50 >More info -0.34 >More info col control (higher order mutant) Original data GEO bulk
174 35S:RPS4 eds1-2 8h 0.51 >More info 0.33 >More info 35S:RPS4 8h leaves Original data
175 leaf blade in D -0.50 >More info -0.34 >More info leaf blade in WL leaf blades Original data GEO bulk
176 root longitudinal zone-4 NaCl 0.29 >More info 0.55 >More info root longitudinal zone-4 Original data GEO bulk
177 Starch sheath 2 days NAA 0.59 >More info 0.25 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
178 tZ 0.58 >More info 0.26 >More info DMSO--WT trans-zeatin roots Original data GEO bulk
179 arp6-10 2h 27 -degree-C 0.51 >More info 0.32 >More info Col-0 2h at 27 ºC whole seedlings Original data GEO bulk
180 LTN005-2 TSA 0.55 >More info 0.28 >More info LTN012-2 Mock Original data
181 P35S:rGRF3 -0.53 >More info -0.30 >More info WS Original data GEO bulk
182 HopZ1a treated -0.51 >More info -0.32 >More info col Original data GEO bulk
183 Inflorescence miR-NGA 0.59 >More info 0.24 >More info Inflorescence wt Original data GEO bulk
184 root cells endodermis 140mM NaCl 8 hours 0.58 >More info 0.25 >More info root cells endodermis standard 1 hour root cells endodermis Original data
185 phosphate-starved -0.24 >More info -0.59 >More info control shoot tissue Original data GEO bulk
186 cpr5scv1 -0.56 >More info -0.26 >More info WT(COL) Original data GEO bulk
187 cov1 cov2 stem Base -0.66 >More info -0.16 >More info WT stem Base stem Base Original data GEO bulk
188 17 0h total 0.53 >More info 0.29 >More info 27 0h total whole seedlings floating on MS medium Original data
189 Cs root -0.51 >More info -0.31 >More info control root Original data GEO bulk
190 axr2-BR 0.63 >More info 0.19 >More info BR BR dark-grown seedlings Original data GEO bulk
191 dcl2-1 -0.61 >More info -0.21 >More info Col-0 Original data GEO bulk
192 intact root auxin 0.55 >More info 0.26 >More info intact root control 5 uM indole-3-acetic acid whole root Original data GEO bulk
193 GA4 3 h (ga1 seed) 0.50 >More info 0.31 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
194 rdr2-1 -0.63 >More info -0.18 >More info Col-0 Original data GEO bulk
195 ein2 mutant roots IAA 0.51 >More info 0.30 >More info roots ethylene Original data GEO bulk
196 JA 24h -0.51 >More info -0.30 >More info EtOH 24h 24hr Original data GEO bulk
197 DFPM -0.51 >More info -0.30 >More info control Original data GEO bulk
198 Col-0 6h NAA 0.67 >More info 0.14 >More info Col-0 6h MOCK Original data GEO bulk
199 gpa1 -ABA LF -0.53 >More info -0.27 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
200 CMV-A2b mutant -0.53 >More info -0.27 >More info Mock-At Aerial tissues Original data GEO bulk
201 Octopus mutant DYG25 0.53 >More info 0.27 >More info WS Original data GEO bulk
202 ABA 24h -0.54 >More info -0.26 >More info EtOH 24h 24hr Original data GEO bulk
203 ptpks2 0.27 >More info 0.53 >More info Col-WT leaves Original data GEO bulk
204 toc1-1-85hr 0.26 >More info 0.54 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
205 UV Stress 24 h (root) -0.59 >More info -0.21 >More info Stress mock 24 h (root) Original data Stress treatments
206 ABA SA 24h -0.21 >More info -0.59 >More info EtOH 24h 24hr Original data GEO bulk
207 Osmotic Stress 24 h (shoot) -0.56 >More info -0.23 >More info Stress mock 24 h (shoot) Original data Stress treatments
208 siliques AtHb1 hypoxia 0.52 >More info 0.27 >More info siliques WT hypoxia hypoxia silique Original data GEO bulk
209 mutant acs9B (single mutant) -0.53 >More info -0.26 >More info col control (single mutant) Original data GEO bulk
210 root cap pGL2(root cap pGL2BRI1) 0h BL -0.50 >More info -0.29 >More info WR 35S 0h BL brassinosteroid root Original data
211 PRR5-VP 6h light on 0.61 >More info 0.18 >More info WT 6h light on whole plant Original data GEO bulk
212 cov1 cov2 stem Top 0.63 >More info 0.16 >More info WT stem Top stem Top Original data GEO bulk
213 des1 water -0.58 >More info -0.21 >More info WT water water leaf Original data GEO bulk
214 MYB29 OE 0.61 >More info 0.17 >More info WT for MYB29/76 Original data GEO bulk
215 8-DAC chr11-1chr17-1 -0.62 >More info -0.16 >More info 8-DAC Col-0 leaf explants Original data
216 08h Col-0 0.59 >More info 0.19 >More info 00h Col-0 Original data GEO bulk
217 slr-1 6h NAA -0.65 >More info -0.13 >More info Col-0 6h NAA Original data GEO bulk
218 gpa1 -ABA GC 0.22 >More info 0.56 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
219 Brz220 3 h 0.50 >More info 0.27 >More info Mock 3 h Original data Effect of brassinosteroid inhibitors on seedlings
220 Col-0 +ABA LF -0.50 >More info -0.27 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
221 root hypoxia pPEP -0.51 >More info -0.26 >More info root hypoxia total hypoxia root Original data GEO bulk
222 WT Root-Pi -0.58 >More info -0.19 >More info WT Root+Pi roots Original data GEO bulk
223 35S::RSL4 -0.57 >More info -0.20 >More info Col-0 Control root Original data GEO bulk
224 T101A 10mM NH4NO3 -0.53 >More info -0.24 >More info col 10mM NH4NO3 Root Original data
225 Phaseolicola 2 h (leaf) -0.24 >More info -0.53 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
226 GST NPP1 4 h (leaf) -0.25 >More info -0.52 >More info Mock 4 h (leaf) Original data Elicitor treatments
227 mpk6-ko Flg22 4h -0.21 >More info -0.56 >More info mpk6-ko H2O 4h Original data GEO bulk
228 Mutant lwd1_lwd2 0.50 >More info 0.26 >More info Wildtype for phy mutants Original data GEO bulk
229 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 0.50 >More info 0.26 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
230 Mutant ap2-6(flower) 0.59 >More info 0.17 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
231 CabpBVR2 -0.54 >More info -0.22 >More info WT Original data GEO bulk
232 root cells cortex 140mM NaCl 20 hours 0.61 >More info 0.15 >More info root cells cortex standard 1 hour root cells cortex Original data
233 Nuclear GSH3 0.54 >More info 0.21 >More info Cytoplasmic GSH3 Media change Original data GEO bulk
234 Ambient CO2 leaf primordia 0.50 >More info 0.25 >More info Control for tissue data leaf primordia Original data
235 csn5 (csn5a-2 csn5b) dark 0.58 >More info 0.17 >More info WT dark Original data GEO bulk
236 upb1-1 elongation zone -0.51 >More info -0.24 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
237 dyt1 0.53 >More info 0.22 >More info WT anther Original data GEO bulk
238 Col(gl) leaf 100mM NaCl -0.56 >More info -0.19 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
239 root endodermis and quiescent center pH4.6 0.54 >More info 0.21 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
240 12h Col-0 0.55 >More info 0.20 >More info 00h Col-0 Original data GEO bulk
241 Root from tip to 130 mm proximal to tip (cut
8dpg)		 0.52 >More info 0.23 >More info Control for tissue data Original data GEO bulk
242 camta1-2 -0.53 >More info -0.22 >More info Col-0-WT Original data GEO bulk
243 35SpBVR3 -0.56 >More info -0.19 >More info WT Original data GEO bulk
244 Col(gl) 100mM NaCl -0.56 >More info -0.19 >More info Col 100mM NaCl 100mM NaCl leaf Original data GEO bulk
245 col-5 hrpA 12h -0.24 >More info -0.51 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
246 DMTU 0.52 >More info 0.22 >More info control Original data GEO bulk
247 NAA 6h 0.68 >More info 0.06 >More info before treatment NAA root Original data GEO bulk
248 M6PR transgenic 0mM NaCl -0.50 >More info -0.24 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
249 high-R:FR bud axillary 0.54 >More info 0.20 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
250 Pto inoculated -0.50 >More info -0.24 >More info col Original data GEO bulk
251 seedling 1.5h after HZE atm-1 -0.53 >More info -0.21 >More info seedling day 1 unirradiated atm-1 1.5h Original data
252 csn4-1 mutant 0.59 >More info 0.15 >More info WT dark Original data GEO bulk
253 Drought Stress 24 h (shoot) -0.55 >More info -0.19 >More info Stress mock 24 h (shoot) Original data Stress treatments
254 6 h SL Attim 17-1 1 0.54 >More info 0.20 >More info 0 h Attim 17-1 1 seed Original data
255 ara1/2mut 0.20 >More info 0.54 >More info Col-3 Original data GEO bulk
256 Flagellin 4 h (leaf) -0.17 >More info -0.56 >More info Mock 4 h (leaf) Original data Elicitor treatments
257 root cells cortex 140mM NaCl 48 hours 0.58 >More info 0.15 >More info root cells cortex standard 1 hour root cells cortex Original data
258 ulp1c ulp1d -0.53 >More info -0.20 >More info col Original data GEO bulk
259 Shoot apex transition (before bolting) 0.51 >More info 0.22 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
260 hni9 high nitrogen 0.55 >More info 0.17 >More info WT high nitrogen roots Original data GEO bulk
261 6 h SL WT 0.53 >More info 0.19 >More info 0 h WT seed Original data
262 MPK6 ox Shoot Hypoxia -0.54 >More info -0.18 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
263 ABA JA 3h -0.53 >More info -0.19 >More info EtOH 3h 3hr Original data GEO bulk
264 HMG 0.52 >More info 0.20 >More info Control for tissue data shoot apical meristem Original data GEO bulk
265 GO5; 0h switch to ambient CO2 concentrations; 0.54 >More info 0.17 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
266 Differentiation 12h 0.54 >More info 0.17 >More info Differentiation 0h leaves Original data
267 04h Col-0 0.53 >More info 0.18 >More info 00h Col-0 Original data GEO bulk
268 4d red light grown hmr-22 seedlings -0.50 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
269 sdg8-2 mutant 0.57 >More info 0.14 >More info wild type leaf Original data GEO bulk
270 exo70A1 -0.52 >More info -0.18 >More info Col-0 whole plant Original data GEO bulk
271 rdr6-15 0.59 >More info 0.11 >More info Col-0 Original data GEO bulk
272 root longitudinal zone-4 low sulfur 0.62 >More info 0.08 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
273 48 h S WT 0.50 >More info 0.20 >More info 0 h WT seed Original data
274 Uniconazole 12 h -0.60 >More info -0.10 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
275 ARR22-ox (t-zeatin 3 h) -0.55 >More info -0.14 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
276 WT seedlings IAA 0.17 >More info 0.52 >More info WT seedlings control Seedlings Original data GEO bulk
277 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (8 dpg)		 0.50 >More info 0.19 >More info Control for tissue data Original data GEO bulk
278 efr-1 untreated 0.51 >More info 0.18 >More info WT untreated untreated Original data GEO bulk
279 WT no Pi -0.50 >More info -0.19 >More info WT complete seedlings Original data
280 -Sulfate 24 h 0.09 >More info 0.60 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
281 48 h S Attim 17-1 1 0.51 >More info 0.17 >More info 0 h Attim 17-1 1 seed Original data
282 Shoot dark control 7h -0.56 >More info -0.12 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
283 csn3-1 dark 0.54 >More info 0.14 >More info WT dark Original data GEO bulk
284 Lipopolysaccaride4 h (leaf) -0.17 >More info -0.51 >More info Mock 4 h (leaf) Original data Elicitor treatments
285 seedling 6h after Gamma atm-1 -0.50 >More info -0.18 >More info seedling day 1 unirradiated atm-1 6h Original data
286 Sha-30min IAA -0.60 >More info -0.08 >More info Sha-0h IAA whole plant Original data GEO bulk
287 dcl1-15 mutant -0.50 >More info -0.17 >More info WT torpedo embryos torpedo embryos Original data GEO bulk
288 MYB76 OE 0.53 >More info 0.14 >More info WT for MYB29/76 Original data GEO bulk
289 Mutant lfy-12(flower) 0.59 >More info 0.08 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
290 fus3-3 12 DAF Seed 0.57 >More info 0.10 >More info WT (Col-0) 12 DAF Seed-3 developing seeds dissected from sliques Original data
291 root cells cortex 140mM NaCl 8 hours 0.50 >More info 0.16 >More info root cells cortex standard 1 hour root cells cortex Original data
292 Ws 2h KNO3 0.50 >More info 0.16 >More info Ws 2h KCl 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
293 msh1 recA3 untreated 0.53 >More info 0.13 >More info WT untreated above-ground parts Original data GEO bulk
294 siliques AtHb1 control 0.14 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
295 Mutant iaa17-6 -0.53 >More info -0.12 >More info Col Original data GEO bulk
296 root cells cortex 140mM NaCl 3 hours 0.55 >More info 0.10 >More info root cells cortex standard 1 hour root cells cortex Original data
297 ABA DFPM -0.54 >More info -0.11 >More info control Original data GEO bulk
298 rdr1-1 -0.54 >More info -0.10 >More info Col-0 Original data GEO bulk
299 chl1-5 10mM NH4NO3 -0.51 >More info -0.13 >More info col 10mM NH4NO3 Root Original data
300 A2hsfa1-ox in quadruple mutant 0.58 >More info 0.06 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
301 C58 6dpi 0.57 >More info 0.06 >More info Reference 6dpi wounded inflorescence stalk segments Original data GEO bulk
302 PRR5-VP 18h light on 0.57 >More info 0.06 >More info WT 18h light on whole plant Original data GEO bulk
303 Cambium 5 days NAA 0.55 >More info 0.07 >More info Stem tissue T0 Interfascicular cambium induced after 5 days NAA in vitro treatment laser capture microdissection Original data GEO bulk
304 ced1 0.55 >More info 0.07 >More info WT PEG 6hr seedlings Original data GEO bulk
305 ahg2-1 0.54 >More info 0.07 >More info WT (Col) control Original data GEO bulk
306 ABA SA 3h -0.53 >More info -0.08 >More info EtOH 3h 3hr Original data GEO bulk
307 Col leaf 100mM NaCl 0.60 >More info 0.01 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
308 Col leaf 100mM NaCl 0.60 >More info 0.01 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
309 Col 100mM NaCl 0.60 >More info 0.01 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
310 arr10 arr12 0.57 >More info 0.04 >More info DMSO--WT DMSO roots Original data GEO bulk
311 M6PR transgenic 100mM NaCl -0.56 >More info -0.04 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk
312 WT (Col-0) inflorescence drought day 5 -0.50 >More info -0.10 >More info WT (Col-0) inflorescence well-watered day 5 Unopen flower buds Original data GEO bulk
313 essp4/sdg8-5 mutant 0.50 >More info 0.10 >More info wild type leaf Original data GEO bulk
314 Bay-0-30min IAA -0.58 >More info -0.02 >More info Bay-0-0h IAA whole plant Original data GEO bulk
315 Shoot submergence 7h -0.59 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
316 Mutant ap1-15(flower) 0.51 >More info 0.08 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
317 lec2-1 8 DAF Seed 0.53 >More info 0.05 >More info WT (WS) 8 DAF Seed developing seeds dissected from sliques Original data
318 etiolated cop1 0.54 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
319 abi3-6 12 DAF Seed 0.51 >More info 0.06 >More info WT (Col-0) 12 DAF Seed-3 developing seeds dissected from sliques Original data
320 opr3 OPDA 0.5 h 0.05 >More info -0.62 >More info opr3 0 h Original data GEO bulk
321 fus3-3 8 DAF Seed 0.53 >More info 0.02 >More info WT (Col-0) 8 DAF Seed developing seeds dissected from sliques Original data
322 root cap pGL2(root cap pGL2BRI1) 3h BL -0.54 >More info 0.03 >More info root cap pGL2(root cap pGL2BRI1) 0h BL brassinosteroid root Original data
323 seedling 3h after HZE WT -0.53 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
324 t-zeatin 3 h 0.51 >More info 0.00 >More info Mock 3 h Original data Basic hormone treatment of seedlings
325 endosperm ABA 0.63 >More info -0.13 >More info endosperm-control ABA endosperm Original data GEO bulk
326 WR 35S 3h BL -0.50 >More info 0.01 >More info WR 35S 0h BL brassinosteroid root Original data
327 Blue Light 45 min -0.13 >More info 0.61 >More info White Light 45min Original data Light treatments
328 CCA1-ox 6am non-polysomal -0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
329 opr3 OPDA 22 h -0.50 >More info 0.03 >More info opr3 0 h Original data GEO bulk
330 root cortex 40 mM NaCl -0.55 >More info 0.09 >More info root cortex Original data GEO bulk
331 QC pSCR(QC pSCRBRI1) 3h BL -0.50 >More info 0.04 >More info QC pSCR(QC pSCRBRI1) 0h BL brassinosteroid root Original data
332 lec1-1 8 DAF Seed 0.51 >More info -0.05 >More info WT (WS) 8 DAF Seed developing seeds dissected from sliques Original data
333 lateral root cap-columella pBRN2 3h BL -0.56 >More info 0.12 >More info lateral root cap-columella pBRN2 0h BL brassinosteroid root Original data
334 Col BTH -0.23 >More info 0.67 >More info Col rosettes Original data GEO bulk
335 Laer pretreat GA Flg22 1h -0.29 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
336 IAA7mII over-expressor IAA Treated -0.27 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
337 6xX2x interploidy cross -0.50 >More info 0.16 >More info 2xX2x cross Original data GEO bulk
338 root cap pGL2 8h BL -0.53 >More info 0.25 >More info root cap pGL2 0h BL brassinosteroid root Original data
339 Leafminer damaged seedlings -0.41 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
340 Col0-PsmES4326-24hpi -0.58 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk