4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root callus inducing medium 48 h
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List of experiments correlated with "root callus inducing medium 48 h"  Help Download transcriptome of top 30
Score Experiment Correlation from
root callus inducing medium 48 h		 Correlation to
root callus inducing medium 48 h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root callus inducing medium 48 h 1.00 >More info 1.00 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
2 root callus inducing medium 24h 0.90 >More info 0.92 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
3 root callus inducing medium 96 h 0.91 >More info 0.90 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
4 root callus inducing medium 12 h 0.83 >More info 0.88 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
5 Col-0 6h NAA 0.56 >More info 0.74 >More info Col-0 6h MOCK Original data GEO bulk
6 NAA 6h 0.56 >More info 0.73 >More info before treatment NAA root Original data GEO bulk
7 IAA 12h 0.58 >More info 0.71 >More info control 12h root Original data GEO bulk
8 IAA 24h 0.50 >More info 0.78 >More info control 24h root Original data GEO bulk
9 IAA 8h 0.56 >More info 0.69 >More info control 8h root Original data GEO bulk
10 IAA 2h 0.48 >More info 0.73 >More info control 2h root Original data GEO bulk
11 FLIGHT TAGESB plate6 ROOTS -0.48 >More info -0.68 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
12 IAA 4h 0.52 >More info 0.63 >More info control 4h root Original data GEO bulk
13 GiantCell Root 0.50 >More info 0.65 >More info Control Root laser captured giant cells Original data GEO bulk
14 auxin and brassinazole seedlings -0.58 >More info -0.56 >More info auxin seedlings Original data GEO bulk
15 Chemically 0.50 >More info 0.63 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
16 roots IAA 0.44 >More info 0.66 >More info roots mock Original data GEO bulk
17 Differentiation 36h 0.47 >More info 0.63 >More info Differentiation 0h leaves Original data
18 rosette Light Wounded -0.41 >More info -0.69 >More info rosette Light Control Original data GEO bulk
19 Col-0 2HS -0.37 >More info -0.71 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
20 Differentiation 24h 0.47 >More info 0.61 >More info Differentiation 0h leaves Original data
21 21h-DC3000 hrpA 0.34 >More info 0.73 >More info 21h-DC3000 leaves Original data GEO bulk
22 rosette Dark Wounded -0.35 >More info -0.72 >More info rosette Dark Control Original data GEO bulk
23 slr-1 6h NAA -0.38 >More info -0.67 >More info Col-0 6h NAA Original data GEO bulk
24 Fei-0-3h IAA 0.41 >More info 0.63 >More info Fei-0-0h IAA whole plant Original data GEO bulk
25 MPK6 ox Shoot Hypoxia -0.41 >More info -0.63 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
26 Leaf wounded -0.38 >More info -0.66 >More info Leaf control vegetative leaf Original data GEO bulk
27 WT 3H Cold -0.26 >More info -0.77 >More info WT control Original data GEO bulk
28 IAA 3 h 0.32 >More info 0.70 >More info Mock 3 h Original data Basic hormone treatment of seedlings
29 Differentiation 48h 0.47 >More info 0.55 >More info Differentiation 0h leaves Original data
30 Col-0 low oxygen -0.45 >More info -0.56 >More info Col-0 Original data GEO bulk
31 flu over-tAPX -0.38 >More info -0.61 >More info WT Col Original data GEO bulk
32 intact root auxin 0.39 >More info 0.60 >More info intact root control 5 uM indole-3-acetic acid whole root Original data GEO bulk
33 Rsch 8h -0.35 >More info -0.64 >More info Rsch CA Leaves Original data
34 SHR-GR Time 1H Dex -0.39 >More info -0.59 >More info SHR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
35 TA induced -0.32 >More info -0.66 >More info Methanol TA Suspension cells Original data GEO bulk
36 WT Shoot Hypoxia -0.41 >More info -0.57 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
37 abi1 hypocotyl -0.34 >More info -0.64 >More info Ler hypocotyl hypocotyl Original data GEO bulk
38 IAA 1h 0.35 >More info 0.63 >More info control 1h root Original data GEO bulk
39 Protoplast Induced -0.28 >More info -0.69 >More info Uninduced Original data GEO bulk
40 Anoxia -0.29 >More info -0.68 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
41 35S::MBF1c -0.28 >More info -0.68 >More info control Original data GEO bulk
42 WT 6H Cold -0.22 >More info -0.74 >More info WT control Original data GEO bulk
43 Col-Luc WT 3h antimycin A -0.41 >More info -0.55 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
44 GiantCell Root 0.54 >More info 0.41 >More info Control Root laser captured giant cells Original data GEO bulk
45 WT AntimycinA 3h -0.38 >More info -0.56 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
46 root stele -S 0.28 >More info 0.65 >More info root stele pH5.7 Original data GEO bulk
47 aerial organ callus inducing medium 96 h 0.50 >More info 0.43 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
48 ISOXABEN 0.36 >More info 0.56 >More info CON 0.1 mM ISOXABEN Original data GEO bulk
49 SA 4mM -0.21 >More info -0.71 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
50 myb3 myb3r4d -0.21 >More info -0.71 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
51 myb61 xylem -0.32 >More info -0.60 >More info wt xylem xylem Original data GEO bulk
52 flu -0.35 >More info -0.56 >More info WT Col Original data GEO bulk
53 root epidermis and lateral root cap -S 0.23 >More info 0.68 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
54 21h-DC3000 avrRpm1 0.32 >More info 0.59 >More info 21h-DC3000 leaves Original data GEO bulk
55 root protoplasts 40 mM NaCl -0.32 >More info -0.59 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
56 CMV-A2b mutant -0.34 >More info -0.56 >More info Mock-At Aerial tissues Original data GEO bulk
57 SAM SE agl15 agl18 double mutant -0.37 >More info -0.53 >More info SAM SE Col Original data GEO bulk
58 Col-0 low oxygen -0.39 >More info -0.51 >More info Col-0 control low oxygen root Original data GEO bulk
59 ckh1 CK200 -0.39 >More info -0.51 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
60 AtLysM RLK1 mutant chitooctaose 0.40 >More info 0.50 >More info WT chitooctaose Original data GEO bulk
61 9 hr Hypoxia IP RNA -0.34 >More info -0.55 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
62 low CO2 + light -0.28 >More info -0.61 >More info normal CO2 + light Original data GEO bulk
63 2 hr Hypoxia Total RNA -0.36 >More info -0.53 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
64 roottip hypoxia total -0.31 >More info -0.58 >More info roottip control total Original data GEO bulk
65 bZIP1ko mutant N+Light+ -0.37 >More info -0.51 >More info WT-sib N+Light+ whole plant Original data GEO bulk
66 OsSAP11 expressing 0.35 >More info 0.53 >More info WT seedlings Original data GEO bulk
67 Col 8h -0.23 >More info -0.65 >More info Col CA Leaves Original data
68 axr1 hypocotyl -0.30 >More info -0.58 >More info wt hypocotyl hypocotyl Original data GEO bulk
69 Seedling-HeatStressed POLYSOMESmRNA -0.28 >More info -0.59 >More info Seedling-control POLYSOMESmRNA seedling Original data
70 WT Shoot-Pi -0.34 >More info -0.52 >More info WT Shoot+Pi shoots Original data GEO bulk
71 Rose Bengal 0.5 uM -0.23 >More info -0.63 >More info Control RB and PER Rose Bengal Original data
72 GST-overexpression seedlings control -0.36 >More info -0.50 >More info WT seedlings control Seedlings Original data
73 shoot hypoxia total -0.29 >More info -0.57 >More info shoot control total Original data GEO bulk
74 Col-0 2h NAA 0.29 >More info 0.57 >More info Col-0 6h MOCK Original data GEO bulk
75 WT+chitooctaose -0.30 >More info -0.54 >More info WT+water chitooctaose seedlings Original data GEO bulk
76 Col 1d -0.32 >More info -0.52 >More info Col CA Leaves Original data
77 aba1 hypocotyl -0.27 >More info -0.57 >More info Ler hypocotyl hypocotyl Original data GEO bulk
78 WT-Dry -0.26 >More info -0.58 >More info WT-CK dehydration treatment 1h Original data
79 Mutant nph4-1 (IAA) -0.30 >More info -0.53 >More info Col (IAA) Original data GEO bulk
80 IAA Treated 0.29 >More info 0.54 >More info Negative Control Original data GEO bulk
81 opr3 JA 0.5 h -0.17 >More info -0.66 >More info opr3 0 h Original data GEO bulk
82 2 hr Hypoxia IP RNA -0.33 >More info -0.50 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
83 SCR-GR Time 1H Dex -0.24 >More info -0.59 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
84 ABA JA 24h -0.14 >More info -0.69 >More info EtOH 24h 24hr Original data GEO bulk
85 Shoot apex inflorescence (after bolting) 0.17 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
86 IAA/inhibitor A Treated -0.31 >More info -0.51 >More info IAA Treated Original data GEO bulk
87 anac017-2 AntimycinA 3h 0.32 >More info 0.50 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
88 aox1a:rpoTmp MLD stressed 0.29 >More info 0.53 >More info WT(Col0) MLD stressed (control aox1a:rpoTmp) leaf Original data
89 SCR 96hr-S 0.29 >More info 0.53 >More info SCR 0hr endodermis Original data
90 root longitudinal zone-1 low sulfur 0.25 >More info 0.57 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
91 Light -0.29 >More info -0.52 >More info Control Original data GEO bulk
92 npr1 sni1 SA -0.29 >More info -0.52 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
93 sfr6 drought 0.19 >More info 0.62 >More info WT drought All aerial tissue Original data GEO bulk
94 9 hr Hypoxia 1 hr recovery IP RNA -0.31 >More info -0.50 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
95 Seedling-HeatStressed TOTALmRNA -0.27 >More info -0.54 >More info Seedling-control TOTALmRNA seedling Original data
96 npr1-3 MOCK 48h 0.29 >More info 0.51 >More info Col-0 MOCK 48h Original data GEO bulk
97 bHLH122 ox 0.20 >More info 0.60 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
98 NahG 0.17 >More info 0.63 >More info Col-0 Leaves Original data GEO bulk
99 2hr continuous KCl and MSX control PeR cell -0.25 >More info -0.55 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
100 empty vector IAA Treated 0.23 >More info 0.57 >More info empty vector mock Original data GEO bulk
101 WT flg22 1h -0.28 >More info -0.51 >More info WT 0h Leaf tissue Original data GEO bulk
102 AFB1 flg22 1h -0.27 >More info -0.52 >More info WT 0h Leaf tissue Original data GEO bulk
103 WT H2O2 3h -0.28 >More info -0.51 >More info WT water 3h 3h_H2O2 Original data GEO bulk
104 WT seedlings MV -0.25 >More info -0.54 >More info WT seedlings control Seedlings Original data GEO bulk
105 Inflorescences Trp1 0.14 >More info 0.65 >More info Inflorescences ler inflorescences Original data GEO bulk
106 Col-0 (t-zeatin 3 h) 0.20 >More info 0.58 >More info Col-0 Original data Cytokinin treatment of seedlings
107 Light 3day wt 0.25 >More info 0.53 >More info 0h wt Original data
108 Atss3 Dark4 0.26 >More info 0.52 >More info Atss3 Dark0.5 Original data GEO bulk
109 wnk8-2 untreated 0.22 >More info 0.56 >More info Col-0 untreated seedlings Original data GEO bulk
110 IXB induced -0.19 >More info -0.59 >More info Methanol IXB Suspension cells Original data GEO bulk
111 Stem tissue 2 days NAA 0.16 >More info 0.62 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
112 4C 2h(SOIL) -0.21 >More info -0.57 >More info 4C 0h(SOIL) Original data GEO bulk
113 Methyl Jasmonate 1 h -0.25 >More info -0.52 >More info Mock 1 h Original data Basic hormone treatment of seedlings
114 Heat and anoxia -0.25 >More info -0.52 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
115 miR393 flg22 1h -0.26 >More info -0.51 >More info WT 0h Leaf tissue Original data GEO bulk
116 Leaf systemic -0.26 >More info -0.51 >More info Leaf control vegetative leaf Original data GEO bulk
117 FarRed Light 45min 0.06 >More info 0.70 >More info White Light 45min Original data Light treatments
118 Selenate (root) -0.26 >More info -0.50 >More info Ws (root) Original data GEO bulk
119 Infected pft1 leaf -0.25 >More info -0.51 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
120 Col ozone 3h -0.21 >More info -0.55 >More info Col clean-air 3h ozone Original data GEO bulk
121 WT drought -0.23 >More info -0.53 >More info WT control All aerial tissue Original data GEO bulk
122 Root Selenate -0.26 >More info -0.50 >More info Root control 40 micromolar selenate Root Original data GEO bulk
123 Te 8h -0.26 >More info -0.50 >More info Te CA Leaves Original data
124 bri1-116 0.02 >More info 0.73 >More info Col seedling Original data GEO bulk
125 sim smr1 0.20 >More info 0.54 >More info WT seedling Original data GEO bulk
126 triploid female excess 0.11 >More info 0.63 >More info tetraploid Original data GEO bulk
127 Methyl Jasmonate 0.5 h -0.19 >More info -0.54 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
128 seed germinating in countinuous light 24h SL 0.05 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
129 gpa1 -ABA GC 0.13 >More info 0.59 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
130 seedling -S Exp 0.07 >More info 0.65 >More info seedling FN Exp seedling Original data
131 pXVE:HA-EDM2-a untreated 0.17 >More info 0.54 >More info Col-0 untreated seedlings Original data GEO bulk
132 wnk8-1 untreated 0.21 >More info 0.50 >More info Col-0 untreated seedlings Original data GEO bulk
133 vtc2 mature somatic embryo -0.21 >More info -0.50 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
134 WT seedlings IAA 0.21 >More info 0.50 >More info WT seedlings control Seedlings Original data GEO bulk
135 Laer Flg22(Agrobacterium) 2h 0.19 >More info 0.51 >More info Laer Control leaf discs Original data GEO bulk
136 tetraploid -0.18 >More info -0.52 >More info diploid Original data GEO bulk
137 35S::PI ap3-3 35S::AP-GR +DEX -0.16 >More info -0.53 >More info 0hr DEX Original data GEO bulk
138 estradiole-induced ANAC092 0.12 >More info 0.57 >More info transgenic (empty vector inducible system) Original data GEO bulk
139 WT 30μM phosphate 8 hours. 0.12 >More info 0.57 >More info WT control (not supplemented). Original data
140 ptpks2 0.04 >More info 0.64 >More info Col-WT leaves Original data GEO bulk
141 Shoot -P -0.16 >More info -0.52 >More info Shoot Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
142 3x(m) -0.04 >More info -0.64 >More info 2x two week old seedlings Original data
143 Red/FR Light45min -0.11 >More info -0.56 >More info FarRed Light 45min Original data Light treatments
144 P.syringae AvrRpt2 4 h (leaf) -0.10 >More info -0.57 >More info Mock 4 h (leaf) Original data Elicitor treatments
145 L2.5 mutant -0.09 >More info -0.58 >More info Wt Original data GEO bulk
146 -Sulfate 24 h 0.03 >More info 0.63 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
147 dark-hs -0.16 >More info -0.50 >More info dark-control seedling Original data
148 whole roots 140 mM NaCl 30 minutes -0.10 >More info -0.55 >More info whole roots standard Original data GEO bulk
149 hira-protoplast 0.11 >More info 0.54 >More info WT-protoplast protoplast Original data
150 ABA SA 24h 0.06 >More info -0.71 >More info EtOH 24h 24hr Original data GEO bulk
151 bZIP1ko mutant N+Light- -0.11 >More info -0.53 >More info WT-sib N+Light- whole plant Original data GEO bulk
152 ex1 flu dark 8hours/30 minute light -0.07 >More info -0.57 >More info col dark 8hours/30 minute light Original data GEO bulk
153 SA 24h 0.05 >More info -0.69 >More info EtOH 24h 24hr Original data GEO bulk
154 Col-0 HS -0.11 >More info -0.51 >More info Col-0 control heat shocked seedling Original data GEO bulk
155 WT (Col-0) heat shock -0.11 >More info -0.51 >More info WT (Col-0) whole seedling Original data GEO bulk
156 3x(p) -0.09 >More info -0.53 >More info 2x two week old seedlings Original data
157 Col BTH -0.06 >More info 0.67 >More info Col rosettes Original data GEO bulk
158 Laer pretreat GA Flg22 1h -0.10 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
159 Whole root - S 72H 0.11 >More info 0.50 >More info Whole root - S 0H Original data GEO bulk
160 desiccated mature pollen grains 0.07 >More info 0.53 >More info hydrated pollen grains Original data GEO bulk
161 Octopus overexpressor 35SDYG25 -0.09 >More info -0.50 >More info WS Original data GEO bulk
162 IAA7mII over-expressor IAA Treated -0.10 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
163 BAM7 Ox untreated 0.09 >More info 0.50 >More info WT untreated none shoot Original data
164 0h ivd 0.02 >More info 0.55 >More info 0h wt Original data
165 red illumination +lincomycin -0.05 >More info 0.61 >More info red illumination -lincomycin Original data GEO bulk
166 Imbibed 1 h (seed) -0.05 >More info -0.50 >More info Dry seed Original data Time course of early seed germination
167 CCA1-ox 6am non-polysomal 0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
168 GA 120min 0.01 >More info -0.52 >More info CON120 GA 120 min. root tips Original data GEO bulk
169 Heat shock optimum -0.14 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
170 Total RNA 35S:HF-RPL18 -0.05 >More info 0.50 >More info Total RNA csp1 12h non-stress rosettes Original data GEO bulk
171 siliques AtHb1 control -0.10 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
172 Col0-PsmES4326-24hpi -0.25 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
173 Leafminer damaged seedlings -0.27 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk