4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on abi1 hypocotyl
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "abi1 hypocotyl"  Help Download transcriptome of top 30
Score Experiment Correlation from
abi1 hypocotyl		 Correlation to
abi1 hypocotyl		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 abi1 hypocotyl 1.00 >More info 1.00 >More info Ler hypocotyl hypocotyl Original data GEO bulk
2 aba1 hypocotyl 0.86 >More info 0.81 >More info Ler hypocotyl hypocotyl Original data GEO bulk
3 myb61 xylem 0.74 >More info 0.75 >More info wt xylem xylem Original data GEO bulk
4 FLIGHT TAGESB plate6 ROOTS 0.77 >More info 0.70 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
5 myb61 cork 0.68 >More info 0.74 >More info wt cork cork Original data GEO bulk
6 4C 2h(SOIL) 0.65 >More info 0.76 >More info 4C 0h(SOIL) Original data GEO bulk
7 Leaf wounded 0.74 >More info 0.66 >More info Leaf control vegetative leaf Original data GEO bulk
8 Selenate (root) 0.73 >More info 0.61 >More info Ws (root) Original data GEO bulk
9 Root Selenate 0.73 >More info 0.61 >More info Root control 40 micromolar selenate Root Original data GEO bulk
10 Protoplast Induced 0.65 >More info 0.69 >More info Uninduced Original data GEO bulk
11 oas-a1.1 Cd 24h 0.63 >More info 0.70 >More info Cd 24h root Shoot Original data GEO bulk
12 WT 3H Cold 0.62 >More info 0.70 >More info WT control Original data GEO bulk
13 bHLH122 ox -0.70 >More info -0.60 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
14 rosette Light Wounded 0.72 >More info 0.56 >More info rosette Light Control Original data GEO bulk
15 root protoplasts 40 mM NaCl 0.71 >More info 0.56 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
16 max4 hypocotyl 0.75 >More info 0.51 >More info wt hypocotyl hypocotyl Original data GEO bulk
17 1h +Pi -0.61 >More info -0.64 >More info 1h -Pi root Original data GEO bulk
18 rosette Dark Wounded 0.76 >More info 0.48 >More info rosette Dark Control Original data GEO bulk
19 Light 0.67 >More info 0.57 >More info Control Original data GEO bulk
20 seedling 12h after HZE WT 0.66 >More info 0.58 >More info seedling day 1 unirradiated WT 12h Original data
21 WT+chitooctaose 0.66 >More info 0.58 >More info WT+water chitooctaose seedlings Original data GEO bulk
22 Mutant lwd1_lwd2 0.62 >More info 0.61 >More info Wildtype for phy mutants Original data GEO bulk
23 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 0.62 >More info 0.61 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
24 WT-Dry 0.69 >More info 0.54 >More info WT-CK dehydration treatment 1h Original data
25 IRP1-OE-Ctrl--root 0.74 >More info 0.49 >More info COL-0-Ctrl--root root Original data
26 ex2 flu dark 8hours/30 minute light 0.60 >More info 0.62 >More info col dark 8hours/30 minute light Original data GEO bulk
27 WT chitooctaose 0.69 >More info 0.53 >More info WT water Original data GEO bulk
28 seedling 6h after HZE WT 0.71 >More info 0.50 >More info seedling day 1 unirradiated WT 6h Original data
29 Leafminer damaged seedlings 0.64 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
30 root cells -Fe 0.67 >More info 0.53 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
31 OsSAP11 expressing -0.63 >More info -0.57 >More info WT seedlings Original data GEO bulk
32 flu 0.72 >More info 0.47 >More info WT Col Original data GEO bulk
33 ga1-3 SCL3OE -0.71 >More info -0.48 >More info ga1-3 whole root Original data
34 3x(m) 0.56 >More info 0.61 >More info 2x two week old seedlings Original data
35 Cycloheximide 3 h 0.73 >More info 0.44 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
36 flu over-tAPX 0.70 >More info 0.47 >More info WT Col Original data GEO bulk
37 root cells stele -Fe 0.65 >More info 0.51 >More info whole roots standard Original data GEO bulk
38 2hr transitory KNO3 PrR cell 0.63 >More info 0.53 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
39 Leafminer systemically damaged thaliana seedlings 0.66 >More info 0.50 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
40 Bur-0-30min IAA 0.76 >More info 0.40 >More info Bur-0h IAA whole plant Original data GEO bulk
41 35S:RPS4 eds1-2 2h -0.58 >More info -0.58 >More info 35S:RPS4 2h leaves Original data
42 OsRLCK253 expressing -0.59 >More info -0.57 >More info WT seedlings Original data GEO bulk
43 root cells epidermis and lateral root cap -Fe 0.71 >More info 0.45 >More info whole roots standard Original data GEO bulk
44 bak1-3 +Pep2 2h 0.56 >More info 0.58 >More info WT +Pep2 2h Pep2 Original data GEO bulk
45 4C 1h 0.55 >More info 0.59 >More info 4C 0h Original data GEO bulk
46 FLIGHT TAGES 2B plate6 HYPOCOTYLS 0.67 >More info 0.47 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
47 Heat shock optimum 0.49 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
48 flu dark 8hours/30 minute light 0.57 >More info 0.57 >More info col dark 8hours/30 minute light Original data GEO bulk
49 CMV-A2b mutant 0.72 >More info 0.41 >More info Mock-At Aerial tissues Original data GEO bulk
50 GiantCell Root -0.65 >More info -0.48 >More info Control Root laser captured giant cells Original data GEO bulk
51 Methyl Jasmonate 0.5 h 0.49 >More info 0.64 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
52 Methyl Jasmonate 1 h 0.48 >More info 0.65 >More info Mock 1 h Original data Basic hormone treatment of seedlings
53 Pst-DC3000(avrRpm1)-4hpi 0.60 >More info 0.52 >More info Pst-DC3000-4hpi Original data GEO bulk
54 P.p 2.5hai 0.60 >More info 0.52 >More info At-Control roots Original data GEO bulk
55 root longitudinal zone-3 pH 4.6 -0.58 >More info -0.54 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
56 HARAP aerobic -0.46 >More info -0.66 >More info WT aerobic aerobic Original data GEO bulk
57 whole roots 140 mM NaCl 30 minutes 0.60 >More info 0.51 >More info whole roots standard Original data GEO bulk
58 npr1 sni1 brca2a SA -0.70 >More info -0.41 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
59 TNT-seedlings 0.49 >More info 0.62 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
60 WT drought 0.64 >More info 0.46 >More info WT control All aerial tissue Original data GEO bulk
61 chito-octamer 0.63 >More info 0.47 >More info Col Mock Original data GEO bulk
62 Col leaf 100mM NaCl 0.59 >More info 0.51 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
63 Col leaf 100mM NaCl 0.59 >More info 0.51 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
64 Col 100mM NaCl 0.59 >More info 0.51 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
65 Leaf systemic 0.66 >More info 0.44 >More info Leaf control vegetative leaf Original data GEO bulk
66 GA 0.68 >More info 0.42 >More info none GA Rosette Original data GEO bulk
67 root callus inducing medium 24h -0.69 >More info -0.41 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
68 Rose Bengal 0.5 uM 0.52 >More info 0.57 >More info Control RB and PER Rose Bengal Original data
69 AtLysM RLK1 mutant chitooctaose -0.61 >More info -0.48 >More info WT chitooctaose Original data GEO bulk
70 Col0-PsmES4326-24hpi 0.48 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
71 NJ15 0.61 >More info 0.47 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
72 chito-tetramer 0.63 >More info 0.44 >More info Col Mock Original data GEO bulk
73 A. thaliana-A. lyrata hybrid -0.66 >More info -0.41 >More info A. thaliana mature leaves before flowering Original data GEO bulk
74 irradiated leaf (WT 5d) 0.65 >More info 0.42 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
75 Atss3 Dark8 -0.58 >More info -0.48 >More info Atss3 Dark0.5 Original data GEO bulk
76 npr1 sni1 SA 0.67 >More info 0.39 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
77 CLO 4mM 0.63 >More info 0.42 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
78 WT seedlings MV 0.66 >More info 0.39 >More info WT seedlings control Seedlings Original data GEO bulk
79 Leafminer locally damaged thaliana seedlings 0.64 >More info 0.41 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
80 SOS1 0mM NaCl 0.59 >More info 0.46 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
81 root cells endodermis and quiescent center -Fe 0.64 >More info 0.41 >More info whole roots standard Original data GEO bulk
82 Infected pft1 leaf 0.58 >More info 0.47 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
83 WT+H2O2 0.64 >More info 0.40 >More info WT H2O2 Original data GEO bulk
84 Rsch 8h 0.53 >More info 0.51 >More info Rsch CA Leaves Original data
85 ein5-1 ski2-3 0.69 >More info 0.34 >More info Col-0 aerial tissue Original data
86 rdr1-1 -0.65 >More info -0.38 >More info Col-0 Original data GEO bulk
87 TA induced 0.61 >More info 0.42 >More info Methanol TA Suspension cells Original data GEO bulk
88 WT 6H Cold 0.59 >More info 0.44 >More info WT control Original data GEO bulk
89 Bur-0-1h IAA 0.75 >More info 0.28 >More info Bur-0h IAA whole plant Original data GEO bulk
90 R. solani AG2-1 0.55 >More info 0.47 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
91 Col-0-30min IAA 0.68 >More info 0.34 >More info Col-0-0h IAA whole plant Original data GEO bulk
92 vtc2 mature somatic embryo 0.56 >More info 0.46 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
93 root cells columella root cap -Fe 0.68 >More info 0.34 >More info whole roots standard Original data GEO bulk
94 current injection 0.46 >More info 0.56 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
95 P.p 10.5hai 0.55 >More info 0.46 >More info At-Control roots Original data GEO bulk
96 ein2-1 9 hpi A. brassicicola 0.61 >More info 0.40 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
97 toc1-1-77hr 0.57 >More info 0.44 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
98 atr mock 0.68 >More info 0.33 >More info WT mock shoot apical meristem Original data
99 Col-0 RNAi-MBS2/mbs1-1 HL 3h -0.52 >More info -0.48 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
100 seedling 6h after HZE atm-1 0.57 >More info 0.43 >More info seedling day 1 unirradiated atm-1 6h Original data
101 psad1-1 stn7-1 -0.70 >More info -0.30 >More info Col-0 rosette leaves Original data GEO bulk
102 P.p 30hai 0.58 >More info 0.42 >More info At-Control roots Original data GEO bulk
103 seedling 12h after HZE atm-1 0.49 >More info 0.51 >More info seedling day 1 unirradiated atm-1 12h Original data
104 9 hr Hypoxia 1 hr recovery Total RNA 0.73 >More info 0.26 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
105 Bur-0-3h IAA 0.68 >More info 0.31 >More info Bur-0h IAA whole plant Original data GEO bulk
106 E.orontii Infection 6 h -0.48 >More info -0.51 >More info Uninfection 6 h Original data Elicitor treatments
107 seedlings protease IV 0.57 >More info 0.41 >More info seedlings nontreated control whole seedling Original data
108 root callus inducing medium 48 h -0.64 >More info -0.34 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
109 9 hr Hypoxia 1 hr recovery IP RNA 0.73 >More info 0.25 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
110 Col-Luc WT 3h antimycin A 0.66 >More info 0.32 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
111 12m.KCl 0.46 >More info 0.52 >More info To. KCl 14 day old Roots Original data GEO bulk
112 CDB1-Knockout -0.34 >More info -0.64 >More info WT Original data GEO bulk
113 root callus inducing medium 12 h -0.65 >More info -0.32 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
114 Col(gl) 0mM NaCl 0.51 >More info 0.46 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
115 Col(gl) leaf 0mM NaCl 0.51 >More info 0.46 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
116 protoplasted roots pH4.6 0.58 >More info 0.39 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
117 ex1 flu dark 8hours/30 minute light 0.44 >More info 0.53 >More info col dark 8hours/30 minute light Original data GEO bulk
118 Col-0 35S:MBS1 HL 3h -0.47 >More info -0.50 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
119 toc1-1-49hr 0.54 >More info 0.42 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
120 IXB induced 0.52 >More info 0.44 >More info Methanol IXB Suspension cells Original data GEO bulk
121 WT Na2S -0.50 >More info -0.46 >More info WT water Na2S leaf Original data GEO bulk
122 WT 3h -P 0.54 >More info 0.42 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
123 leaf13 0.50 >More info 0.46 >More info unwounded leaves none Original data GEO bulk
124 ataf1-1 mutant Col-0 Bgh inoculated 0.64 >More info 0.32 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
125 Te 8h 0.45 >More info 0.51 >More info Te CA Leaves Original data
126 root cells cortex -Fe 0.69 >More info 0.26 >More info whole roots standard Original data GEO bulk
127 opr3 JA 0.5 h 0.26 >More info 0.69 >More info opr3 0 h Original data GEO bulk
128 anac017-2 AntimycinA 3h -0.67 >More info -0.27 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
129 mutant acs4A (single mutant) -0.60 >More info -0.34 >More info col control (single mutant) Original data GEO bulk
130 irradiated leaf (cmt 5d) 0.62 >More info 0.31 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
131 P.p 6hai 0.59 >More info 0.34 >More info At-Control roots Original data GEO bulk
132 inhibitor A Treated 0.62 >More info 0.31 >More info Negative Control Original data GEO bulk
133 mutant acs6E (single mutant) -0.62 >More info -0.31 >More info col control (single mutant) Original data GEO bulk
134 tbf1-mock infiltration -0.61 >More info -0.32 >More info WT-mock infiltration water for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
135 estradiole-induced ANAC059 0.32 >More info 0.61 >More info transgenic (empty vector inducible system) Original data GEO bulk
136 WT no Pi 0.54 >More info 0.38 >More info WT complete seedlings Original data
137 cys-c1 root -0.57 >More info -0.35 >More info Root-WT roots Original data GEO bulk
138 sid2-1 cold -0.57 >More info -0.35 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
139 mutant acs5C (single mutant) -0.56 >More info -0.35 >More info col control (single mutant) Original data GEO bulk
140 Atss3 Dark4 -0.51 >More info -0.40 >More info Atss3 Dark0.5 Original data GEO bulk
141 toc1-1-57hr 0.56 >More info 0.35 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
142 HARAP hypoxic 0.60 >More info 0.31 >More info hypoxic hypoxia Original data GEO bulk
143 pmr5 0.50 >More info 0.41 >More info Col-0 Original data GEO bulk
144 rrd1 IBA -0.33 >More info -0.58 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
145 whole roots 140 mM NaCl 1 hour 0.56 >More info 0.34 >More info whole roots standard Original data GEO bulk
146 hira-protoplast 0.50 >More info 0.40 >More info WT-protoplast protoplast Original data
147 Col-0-1h IAA 0.62 >More info 0.28 >More info Col-0-0h IAA whole plant Original data GEO bulk
148 atmospheric CO2 high Mg shoot 0.65 >More info 0.25 >More info atmospheric CO2 normal Mg shoot Shoot Original data
149 24h volatiles Sp. HRO-C48 0.52 >More info 0.38 >More info 24h untreated whole seedling Original data GEO bulk
150 35S::RSL4 -0.51 >More info -0.39 >More info Col-0 Control root Original data GEO bulk
151 coi1-16 ein2 sid2 ctrl -0.62 >More info -0.28 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
152 WT AntimycinA 3h 0.62 >More info 0.28 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
153 lug3 leaves 0.60 >More info 0.30 >More info WT-leaves matured rosette leaves Original data GEO bulk
154 FLIGHT TAGESB plate6 SHOOTS 0.69 >More info 0.21 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
155 Col-0 37C 0.67 >More info 0.22 >More info Col-0 22C Original data GEO bulk
156 WT-NOCO2 INFECTED 0.64 >More info 0.25 >More info WT-MOCK Original data GEO bulk
157 AtGATA2ox 0.63 >More info 0.26 >More info Col seedling Original data GEO bulk
158 mutant acs2B (single mutant) -0.60 >More info -0.29 >More info col control (single mutant) Original data GEO bulk
159 WT Col-0 Bgh inoculated 0.60 >More info 0.29 >More info WT Col-0 Un-inoculated Original data GEO bulk
160 DC3000 24h 0.54 >More info 0.34 >More info Mock 24h DC3000 Original data GEO bulk
161 Starch sheath 5 days MS incubation 0.33 >More info 0.55 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
162 hst5 0.67 >More info 0.21 >More info Col-0 Original data GEO bulk
163 WT 30μM arsenate 8 hours. 0.63 >More info 0.25 >More info WT control (not supplemented). Original data
164 rli 0.60 >More info 0.28 >More info WT whole plant Original data GEO bulk
165 2hr transitory KNO3 SR cell 0.62 >More info 0.26 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
166 Atss3 Light1 -0.38 >More info -0.50 >More info Atss3 Dark0.5 Original data GEO bulk
167 M6PR transgenic 0mM NaCl 0.57 >More info 0.31 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
168 axr1 hypocotyl 0.56 >More info 0.31 >More info wt hypocotyl hypocotyl Original data GEO bulk
169 shoot-10 μM DEX- 6 hr 0.50 >More info 0.37 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
170 ref6-1 0.50 >More info 0.37 >More info Col whole seedling Original data GEO bulk
171 inhibitor B Treated 0.53 >More info 0.33 >More info Negative Control Original data GEO bulk
172 wnk8-2 untreated -0.52 >More info -0.34 >More info Col-0 untreated seedlings Original data GEO bulk
173 IAA/inhibitor A Treated 0.66 >More info 0.19 >More info IAA Treated Original data GEO bulk
174 wavy 0.56 >More info 0.29 >More info WT Original data GEO bulk
175 tetraploid 0.51 >More info 0.34 >More info diploid Original data GEO bulk
176 Col-0 DCA 48h 0.52 >More info 0.33 >More info Col-0 MOCK 48h Original data GEO bulk
177 sfr6 drought -0.60 >More info -0.25 >More info WT drought All aerial tissue Original data GEO bulk
178 mutant acs1A (single mutant) -0.50 >More info -0.35 >More info col control (single mutant) Original data GEO bulk
179 vtc2-1 -0.69 >More info -0.16 >More info Col-0 whole plant Original data GEO bulk
180 Col-0-3h IAA 0.61 >More info 0.24 >More info Col-0-0h IAA whole plant Original data GEO bulk
181 Col-0 ozone 0.58 >More info 0.27 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
182 3x(p) 0.54 >More info 0.30 >More info 2x two week old seedlings Original data
183 vte2-1 3d vernalization 0.54 >More info 0.30 >More info WT 3d vernalization Original data GEO bulk
184 Te ozone 0.54 >More info 0.30 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
185 AgNO3 3 h 0.56 >More info 0.28 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
186 sid2-2 9 hpi A. brassicicola 0.56 >More info 0.28 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
187 Salt Stress 24 h (root) 0.54 >More info 0.30 >More info Stress mock 24 h (root) Original data Stress treatments
188 Dry midday -0.33 >More info -0.51 >More info Wet midday water-limited whole rosette Original data GEO bulk
189 dcl2-1 -0.60 >More info -0.24 >More info Col-0 Original data GEO bulk
190 root callus inducing medium 96 h -0.60 >More info -0.24 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
191 6h +Pi -0.62 >More info -0.22 >More info 6h -Pi root Original data GEO bulk
192 CT101 ozone 0.54 >More info 0.29 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
193 rdr2-1 -0.65 >More info -0.18 >More info Col-0 Original data GEO bulk
194 noa1-2 0.55 >More info 0.28 >More info Col-0 whole seedlings Original data GEO bulk
195 Differentiation 48h -0.63 >More info -0.20 >More info Differentiation 0h leaves Original data
196 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.58 >More info 0.25 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
197 protoplasts T1 [flg22] 0.58 >More info 0.25 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
198 Shoot P recovery 0.64 >More info 0.18 >More info Shoot -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
199 Wounding Stress3 h (shoot) 0.54 >More info 0.28 >More info Stress mock 3 h (shoot) Original data Stress treatments
200 M6PR transgenic leaf 0mM NaCl 0.50 >More info 0.32 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
201 ARR22-ox (t-zeatin 3 h) 0.64 >More info 0.18 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
202 T6 leaf-drought -0.59 >More info -0.23 >More info T6 leaf-well watered Original data GEO bulk
203 Col-0 2HS 0.55 >More info 0.26 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
204 Elevated CO2 AMPLE N NIGHT 0.53 >More info 0.28 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
205 seedling 24h after HZE WT 0.66 >More info 0.15 >More info seedling day 2 unirradiated WT 24h Original data
206 WT-16ºC -0.50 >More info -0.31 >More info WT-23ºC Original data GEO bulk
207 IAA/inhibitor B Treated 0.50 >More info 0.31 >More info IAA Treated Original data GEO bulk
208 col-5 DC3000 12h 0.50 >More info 0.31 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
209 msh1 albino 0.57 >More info 0.24 >More info WT aerial part Original data GEO bulk
210 abi4-102 (II) 0.58 >More info 0.23 >More info Col (II) rosette Original data GEO bulk
211 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.60 >More info 0.21 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
212 ice1 control 0.61 >More info 0.19 >More info WT control Original data GEO bulk
213 Transgenic LEC2GR Seedling 1h Dex 0.52 >More info 0.28 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
214 35S::MBF1c 0.60 >More info 0.20 >More info control Original data GEO bulk
215 Col-0 low oxygen 0.56 >More info 0.24 >More info Col-0 control low oxygen root Original data GEO bulk
216 hira-root -0.55 >More info -0.25 >More info WT-root root Original data
217 Col-0 9 hpi A. brassicicola 0.50 >More info 0.30 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
218 LTN008-2 aza-dc 0.61 >More info 0.19 >More info LTN012-2 Mock Original data
219 abh1 +ABA -0.51 >More info -0.29 >More info Col-0 +ABA Original data GEO bulk
220 IMI 4mM 0.55 >More info 0.25 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
221 2hr continuous KNO3 SR cell 0.58 >More info 0.22 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
222 Col-0 Root 100 mM ATP 30 min 0.60 >More info 0.19 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
223 seedling 24h after HZE atm-1 0.53 >More info 0.26 >More info seedling day 2 unirradiated atm-1 24h Original data
224 anac017-1 H2O2 3h -0.50 >More info -0.29 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
225 elevated CO2 normal Mg root 0.61 >More info 0.18 >More info atmospheric CO2 normal Mg root Root Original data
226 lug3 flowers 0.65 >More info 0.14 >More info WT-flowers flowers Original data GEO bulk
227 Mutant coi1(leaf) -0.60 >More info -0.19 >More info Col-0 (leaf) Original data GEO bulk
228 WUSp cells 0.55 >More info 0.24 >More info Protoplast Induced Original data GEO bulk
229 rdr6-15 -0.54 >More info -0.25 >More info Col-0 Original data GEO bulk
230 seedling -S Exp -0.24 >More info -0.55 >More info seedling FN Exp seedling Original data
231 SCL3 OE -0.59 >More info -0.19 >More info Col-0 whole root Original data GEO bulk
232 2hr continuous KNO3 PrR cell 0.64 >More info 0.14 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
233 Differentiation 36h -0.60 >More info -0.18 >More info Differentiation 0h leaves Original data
234 M6PR transgenic leaf 100mM NaCl -0.51 >More info -0.27 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
235 BLM+INA 0.56 >More info 0.22 >More info CK BLM and INA seedling Original data
236 atr zebularine 0.54 >More info 0.24 >More info WT zebularine shoot apical meristem Original data
237 atmospheric CO2 low Mg root 0.61 >More info 0.17 >More info atmospheric CO2 normal Mg root Root Original data
238 toc1-1-53hr 0.53 >More info 0.25 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
239 bri1-116 0.05 >More info 0.73 >More info Col seedling Original data GEO bulk
240 6h volatiles Sp. HRO-C48 0.28 >More info 0.50 >More info 6h untreated whole seedling Original data GEO bulk
241 9 hr Hypoxia IP RNA 0.59 >More info 0.18 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
242 pmr5 pmr6 0.50 >More info 0.27 >More info Col-0 Original data GEO bulk
243 R. solani AG8 0.54 >More info 0.23 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
244 SA 4mM 0.63 >More info 0.14 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
245 ckh1 CK25 0.51 >More info 0.26 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
246 Laer pretreat GA Flg22 1h 0.06 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
247 WT 2-4h Xanthomonas 0.55 >More info 0.21 >More info WT T0 Original data GEO bulk
248 Roots Cd -0.68 >More info -0.08 >More info Roots control Cd Root Original data GEO bulk
249 myb50 xylem 0.53 >More info 0.23 >More info wt xylem xylem Original data GEO bulk
250 C24-30min IAA 0.52 >More info 0.24 >More info C24-0h IAA whole plant Original data GEO bulk
251 elevated CO2 high Mg shoot -0.59 >More info -0.17 >More info atmospheric CO2 high Mg shoot Shoot Original data
252 P35S:rGRF3 0.59 >More info 0.17 >More info WS Original data GEO bulk
253 A. lyrata -0.62 >More info -0.13 >More info A. thaliana mature leaves before flowering Original data GEO bulk
254 seed germinating in countinuous light 24h SL 0.08 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
255 16h Col-0 0.19 >More info 0.56 >More info 00h Col-0 Original data GEO bulk
256 2hr KCl control SR cell 0.56 >More info 0.18 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
257 cs26 short-day -0.55 >More info -0.19 >More info Leaves-WT-SD leaf Original data GEO bulk
258 anti-sense for AtAOX1a 0.50 >More info 0.24 >More info WT Original data GEO bulk
259 9 hr Hypoxia Total RNA 0.60 >More info 0.14 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
260 WT flg22 1h 0.51 >More info 0.23 >More info WT 0h Leaf tissue Original data GEO bulk
261 Differentiation 24h -0.58 >More info -0.16 >More info Differentiation 0h leaves Original data
262 Infected Col-0 leaf -0.57 >More info -0.16 >More info Mock Col-0 leaf F. oxysporum leaf Original data GEO bulk
263 WT Seedling BL+ABA 0.53 >More info 0.20 >More info WT Seedling BL Original data GEO bulk
264 gir root 4%glc 0.54 >More info 0.19 >More info Col-7 root 4%glc root Original data GEO bulk
265 WT NAA/flg 1h 0.53 >More info 0.20 >More info WT 0h Leaf tissue Original data GEO bulk
266 cdpk6-yfp 0.55 >More info 0.18 >More info Kan seedlings Original data GEO bulk
267 Ts5 roots 2hr KCl control 0.51 >More info 0.22 >More info Col0 roots 2hr KCl control root Original data GEO bulk
268 AFB1 flg22 1h 0.52 >More info 0.21 >More info WT 0h Leaf tissue Original data GEO bulk
269 Polysomal RNA 35S:HF-RPL18 cold 0.23 >More info 0.50 >More info Polysomal RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
270 vtc1 (II) 0.55 >More info 0.17 >More info Col (II) rosette Original data GEO bulk
271 rcf1-1 cold 0h 0.54 >More info 0.18 >More info WT cold 0h Control seedlings Original data GEO bulk
272 35S::ERF104 H2O 4h 0.55 >More info 0.16 >More info Col-0 H2O 4h Original data GEO bulk
273 swn-7 -0.54 >More info -0.17 >More info Col whole plant Original data GEO bulk
274 mutant acs5D (single mutant) -0.54 >More info -0.17 >More info col control (single mutant) Original data GEO bulk
275 gai MeJA 1h -0.58 >More info -0.13 >More info Laer MeJA 1h leaf discs Original data GEO bulk
276 npr1 sni1 ssn2 SA -0.61 >More info -0.10 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
277 Botrytis cinerea 48h 0.51 >More info 0.20 >More info control 48h Original data GEO bulk
278 coi1-16 ein2 sid2 ozone 0.51 >More info 0.20 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
279 dde2-2 24hpi A. brassicicola -0.18 >More info -0.53 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
280 Col-0 under 4 days salt 0.54 >More info 0.16 >More info Col-0 under control 4 days salt treatment rosette Original data
281 bak1-3 +Pep2 10h 0.53 >More info 0.17 >More info WT +Pep2 10h Pep2 Original data GEO bulk
282 Col upon hypoxia 6 hrs 0.59 >More info 0.11 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
283 cngc4 0.51 >More info 0.19 >More info Ws-2 Seedlings Original data GEO bulk
284 2 hr Hypoxia Total RNA 0.56 >More info 0.13 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
285 RRE1 Chitin 0.59 >More info 0.10 >More info Chitin Original data GEO bulk
286 ckh1 CK0 0.54 >More info 0.14 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
287 seedlings +5AC 0.56 >More info 0.12 >More info control seedlings 10-day old whole seedling Original data GEO bulk
288 Mutant siz1-3 (Drought) 0.52 >More info 0.16 >More info Col-0 (Drought) Original data GEO bulk
289 erf104-ko H2O 4h 0.53 >More info 0.15 >More info Col-0 H2O 4h Original data GEO bulk
290 siz1-3 drought 0.52 >More info 0.16 >More info Col-0 drought Original data GEO bulk
291 RRE2 Chitin 0.55 >More info 0.12 >More info Chitin Original data GEO bulk
292 ga1-3/brm-1 0.50 >More info 0.17 >More info wt shoots Original data GEO bulk
293 shoots WT 0uM Fe 0.53 >More info 0.14 >More info shoots WT 100uM Fe 0uM Fe shoots Original data GEO bulk
294 gul2-1 bri1-5 mutant 0.55 >More info 0.12 >More info WT 7 day-old whole seedlings Original data
295 GST 4 h (leaf) 0.53 >More info 0.14 >More info Mock 4 h (leaf) Original data Elicitor treatments
296 Shoot apex inflorescence (after bolting) 0.02 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
297 TaFLS overexpression line (OE2) -0.52 >More info -0.14 >More info Col-0 Rosette leaves Original data
298 dcl3-1 -0.52 >More info -0.14 >More info Col-0 Original data GEO bulk
299 hrpA 7h 0.51 >More info 0.15 >More info Mock 7h hrpA Original data GEO bulk
300 rosette leaves fdh 0.57 >More info 0.09 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
301 -Sulfate 24 h -0.08 >More info -0.58 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
302 IAA7mII over-expressor IAA Treated -0.03 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
303 arr-dmso-sample 0.51 >More info 0.14 >More info Wt-dmso-sample seedling Original data
304 SAM SE agl15 agl18 double mutant 0.50 >More info 0.15 >More info SAM SE Col Original data GEO bulk
305 Heat 6h -0.52 >More info -0.13 >More info At mock rosettes - 5 leaves stage Original data
306 IRP1-OE-Fe--shoot 0.50 >More info 0.15 >More info COL-0-Fe--shoot shoot Original data
307 Shoot -K 0.52 >More info 0.13 >More info Control-shoot Original data GEO bulk
308 WT (Col-0) inflorescence drought day 4 0.50 >More info 0.15 >More info WT (Col-0) inflorescence well-watered day 4 Unopen flower buds Original data GEO bulk
309 K starvation (shoot) 0.52 >More info 0.13 >More info Ws (shoot) Original data GEO bulk
310 siliques AtHb1 control 0.13 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
311 sid2 -0.50 >More info -0.14 >More info Col rosettes Original data GEO bulk
312 seedling 24h after Gamma WT 0.55 >More info 0.09 >More info seedling day 2 unirradiated WT 24h Original data
313 Col-0-avrB-6h 0.51 >More info 0.13 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
314 rao2 H2O2 3h -0.56 >More info -0.07 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
315 Atwrky63 -0.58 >More info -0.05 >More info Col0 none leaf Original data GEO bulk
316 vte1-1 3d vernalization -0.50 >More info -0.13 >More info WT 3d vernalization Original data GEO bulk
317 penta MeJA 1h 0.50 >More info 0.13 >More info Laer MeJA 1h leaf discs Original data GEO bulk
318 erf115ko roottip5days -0.51 >More info -0.12 >More info Col-0 roottip5days root tips Original data
319 T8 leaf-drought -0.56 >More info -0.06 >More info T8 leaf-well watered Original data GEO bulk
320 amiR-ETP1/2 0.51 >More info 0.11 >More info Col-0 air Original data GEO bulk
321 php 0.58 >More info 0.04 >More info WT Original data GEO bulk
322 20h Col-0 0.09 >More info 0.53 >More info 00h Col-0 Original data GEO bulk
323 Col-0 SA 0.55 >More info 0.06 >More info Col-0 Original data GEO bulk
324 seedlings + TSA 0.54 >More info 0.07 >More info control seedlings 10-day old whole seedling Original data GEO bulk
325 wrky33 Bc inoculation 14h 0.52 >More info 0.09 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
326 clf-28 -0.53 >More info -0.08 >More info Col whole plant Original data GEO bulk
327 Col-0 wt Hypoxic 0.53 >More info 0.08 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
328 epiF3 -0.56 >More info -0.04 >More info WT Col-0 aerial part Original data
329 myb3 myb3r4d 0.55 >More info 0.04 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
330 2 hr Hypoxia IP RNA 0.51 >More info 0.08 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
331 Col-0 24hpi A. brassicicola 0.57 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
332 grf1/grf2/grf3 0.50 >More info 0.07 >More info WS Original data GEO bulk
333 seedling 1.5h after HZE WT 0.50 >More info 0.07 >More info seedling day 1 unirradiated WT 1.5h Original data
334 Cd 18h root -0.03 >More info -0.54 >More info WT-Untreated Root Original data GEO bulk
335 Col BTH -0.10 >More info 0.67 >More info Col rosettes Original data GEO bulk
336 arr10 arr12 -0.59 >More info 0.02 >More info DMSO--WT DMSO roots Original data GEO bulk
337 S17 0.53 >More info 0.03 >More info Control for tissue data shoot apical meristem Original data GEO bulk
338 stn7-1 -0.69 >More info 0.13 >More info Col-0 rosette leaves Original data GEO bulk
339 IAA 24h 0.54 >More info 0.01 >More info control 24h root Original data GEO bulk
340 FLIGHT TAGESB plate 0.68 >More info -0.13 >More info GROUND CONTROL TAGESB plate Original data
341 mil4 sid2 -0.51 >More info -0.03 >More info Col rosettes Original data GEO bulk
342 downy mildew cotyledons late stage 0.67 >More info -0.13 >More info mock inoculated Cotyledons Original data GEO bulk
343 root hypoxia total 0.53 >More info 0.01 >More info root control total Original data GEO bulk
344 Red/FR Light45min -0.09 >More info 0.63 >More info FarRed Light 45min Original data Light treatments
345 cat2-hCO2 -0.51 >More info -0.02 >More info Col0-hCO2 grown for five weeks at high CO2 concentration (3000 ppm) in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
346 seedling 3h after HZE WT 0.51 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
347 shoots bhlh100/101 0uM Fe 0.50 >More info 0.01 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
348 HairpinZ 4 h (leaf) 0.54 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
349 Apex octa 18DAS -0.53 >More info 0.02 >More info Apex Col 14DAS Original data GEO bulk
350 vtc1-1 -0.53 >More info 0.03 >More info Col-0 whole plant Original data GEO bulk
351 Nicotinamide-57hr 0.52 >More info -0.02 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
352 CCA1-ox 6am non-polysomal -0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
353 Cotyledons 0.51 >More info -0.07 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
354 AsAKiin11 T2 -0.50 >More info 0.06 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
355 roottip hypoxia total 0.51 >More info -0.07 >More info roottip control total Original data GEO bulk
356 WT roots - Fe 0.51 >More info -0.08 >More info WT roots + Fe Roots Original data GEO bulk
357 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.51 >More info 0.09 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
358 toc1-1-65hr 0.52 >More info -0.11 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
359 W(Liq) L-AOPP -0.12 >More info 0.52 >More info W(Liq) Mock whole plant Original data GEO bulk
360 21h-DC3000 avrRpm1 -0.52 >More info 0.13 >More info 21h-DC3000 leaves Original data GEO bulk
361 Nicotinamide-65hr 0.53 >More info -0.14 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
362 Nicotinamide-61hr 0.52 >More info -0.14 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
363 spx1 spx2 resupplied Pi 4h -0.59 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
364 Nicotinamide-89hr 0.50 >More info -0.16 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
365 AsAKiin11 T3 -0.59 >More info 0.31 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
366 shoots bhlh100/101 100uM Fe 0.57 >More info -0.38 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
367 vte2 leaves 0h LT -0.40 >More info 0.52 >More info Col leaves 0h LT h 9-11th adult leaves Original data
368 WT NAA 1h 0.55 >More info -0.48 >More info WT 0h Leaf tissue Original data GEO bulk