4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on whole roots 140 mM NaCl 30 minutes
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Score Experiment Correlation from
whole roots 140 mM NaCl 30 minutes		 Correlation to
whole roots 140 mM NaCl 30 minutes		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 whole roots 140 mM NaCl 30 minutes 1.00 >More info 1.00 >More info whole roots standard Original data GEO bulk
2 whole roots 140 mM NaCl 1 hour 0.94 >More info 0.92 >More info whole roots standard Original data GEO bulk
3 NaCl Col 0.87 >More info 0.77 >More info Col Original data GEO bulk
4 whole roots 140 mM NaCl 4 hour 0.89 >More info 0.72 >More info whole roots standard Original data GEO bulk
5 root longitudinal zone-4 NaCl 0.82 >More info 0.79 >More info root longitudinal zone-4 Original data GEO bulk
6 root stele 40 mM NaCls 0.80 >More info 0.75 >More info root stele Original data GEO bulk
7 WT 3H Cold 0.70 >More info 0.81 >More info WT control Original data GEO bulk
8 ABA 1 h 0.64 >More info 0.79 >More info Mock 1 h Original data Basic hormone treatment of seedlings
9 root cells cortex 140mM NaCl 1 hour 0.76 >More info 0.67 >More info root cells cortex standard 1 hour root cells cortex Original data
10 NJ15 0.74 >More info 0.69 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
11 whole roots 140 mM NaCl 16 hour 0.82 >More info 0.61 >More info whole roots standard Original data GEO bulk
12 root longitudinal zone-3 NaCl 0.74 >More info 0.68 >More info root longitudinal zone-3 Original data GEO bulk
13 whole roots 140 mM NaCl 32 hour 0.82 >More info 0.59 >More info whole roots standard Original data GEO bulk
14 WT-Dry 0.70 >More info 0.67 >More info WT-CK dehydration treatment 1h Original data
15 root endodermis and quiescent center 40 mM NaCl 0.68 >More info 0.68 >More info root endodermis and quiescent center Original data GEO bulk
16 root cells stele 140mM NaCl 1 hour 0.75 >More info 0.61 >More info root cells stele standard 1 hour root cells stele Original data
17 root columella root cap 40 mM NaCl 0.67 >More info 0.67 >More info root columella root cap Original data GEO bulk
18 6h +Pi -0.66 >More info -0.67 >More info 6h -Pi root Original data GEO bulk
19 root cells epidermis 140mM NaCl 1 hour 0.68 >More info 0.64 >More info root cells epidermis standard 1 hour root cells epidermis Original data
20 root epidermis and lateral root cap 40 mM NaCl 0.69 >More info 0.62 >More info root epidermis and lateral root cap Original data GEO bulk
21 root longitudinal zone-2 NaCl 0.67 >More info 0.63 >More info root longitudinal zone-2 Original data GEO bulk
22 Salt Stress 24 h (root) 0.78 >More info 0.52 >More info Stress mock 24 h (root) Original data Stress treatments
23 HSP90 Reduced RNAi-A2 0.69 >More info 0.60 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
24 Osmotic Stress 24 h (root) 0.80 >More info 0.49 >More info Stress mock 24 h (root) Original data Stress treatments
25 8hr-pH4.5 0.62 >More info 0.64 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
26 FLIGHT TAGESB plate6 ROOTS 0.63 >More info 0.63 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
27 root cells endodermis 140mM NaCl 1 hour 0.68 >More info 0.57 >More info root cells endodermis standard 1 hour root cells endodermis Original data
28 WT 6H Cold 0.60 >More info 0.65 >More info WT control Original data GEO bulk
29 root cells stele 140mM NaCl 3 hours 0.66 >More info 0.59 >More info root cells stele standard 1 hour root cells stele Original data
30 WT H2O2 3h 0.68 >More info 0.56 >More info WT water 3h 3h_H2O2 Original data GEO bulk
31 Col-0 low oxygen 0.64 >More info 0.59 >More info Col-0 control low oxygen root Original data GEO bulk
32 WT 24H Cold 0.72 >More info 0.50 >More info WT control Original data GEO bulk
33 Protoplast Induced 0.60 >More info 0.62 >More info Uninduced Original data GEO bulk
34 K starvation (root) 0.65 >More info 0.56 >More info Ws (root) Original data GEO bulk
35 Root -K 0.65 >More info 0.55 >More info Control-root Original data GEO bulk
36 Col in Pi deficiency medium 0.60 >More info 0.60 >More info Col in control medium root Original data GEO bulk
37 ABA 3 h 0.62 >More info 0.58 >More info Mock 3 h Original data Basic hormone treatment of seedlings
38 24h +Pi -0.59 >More info -0.60 >More info 24h -Pi root Original data GEO bulk
39 low CO2 + light 0.58 >More info 0.61 >More info normal CO2 + light Original data GEO bulk
40 pmr5 pmr6 0.68 >More info 0.50 >More info Col-0 Original data GEO bulk
41 ABA 0.5 h 0.66 >More info 0.52 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
42 Seedling-HeatStressed POLYSOMESmRNA 0.66 >More info 0.52 >More info Seedling-control POLYSOMESmRNA seedling Original data
43 afb3-1 2h KNO3 0.54 >More info 0.63 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
44 WT drought 0.64 >More info 0.53 >More info WT control All aerial tissue Original data GEO bulk
45 oas-a1.1 Cd 18h 0.46 >More info 0.71 >More info Cd 18h root Root Original data GEO bulk
46 Whole root - low pH 12H 0.47 >More info 0.70 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
47 Heat shock optimum 0.51 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
48 TNT-seedlings 0.59 >More info 0.57 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
49 rosette Light Wounded 0.61 >More info 0.54 >More info rosette Light Control Original data GEO bulk
50 root cells stele -Fe 0.74 >More info 0.41 >More info whole roots standard Original data GEO bulk
51 hira-root -0.51 >More info -0.63 >More info WT-root root Original data
52 GA 120min 0.53 >More info 0.61 >More info CON120 GA 120 min. root tips Original data GEO bulk
53 2 hr Hypoxia Total RNA 0.61 >More info 0.53 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
54 root Dosed gold 0.63 >More info 0.51 >More info root No gold .125 mM gold 24 h roots Original data
55 0.125 mM gold 24 h 0.63 >More info 0.51 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
56 root cells stele 140mM NaCl 32 hours 0.57 >More info 0.57 >More info root cells stele standard 1 hour root cells stele Original data
57 Col-0 2HS 0.58 >More info 0.55 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
58 root cells stele 140mM NaCl 8 hours 0.63 >More info 0.50 >More info root cells stele standard 1 hour root cells stele Original data
59 Leafminer damaged seedlings 0.57 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
60 dicamba 0.62 >More info 0.51 >More info WT mock whole seedling Original data GEO bulk
61 4C 1h 0.35 >More info 0.78 >More info 4C 0h Original data GEO bulk
62 inhibitor A Treated 0.59 >More info 0.53 >More info Negative Control Original data GEO bulk
63 inhibitor B Treated 0.62 >More info 0.50 >More info Negative Control Original data GEO bulk
64 root cells stele 140mM NaCl 48 hours 0.56 >More info 0.55 >More info root cells stele standard 1 hour root cells stele Original data
65 root cells epidermis 140mM NaCl 3 hours 0.56 >More info 0.55 >More info root cells epidermis standard 1 hour root cells epidermis Original data
66 WT seedlings MV 0.58 >More info 0.53 >More info WT seedlings control Seedlings Original data GEO bulk
67 IAA/inhibitor A Treated 0.62 >More info 0.49 >More info IAA Treated Original data GEO bulk
68 abi1 hypocotyl 0.51 >More info 0.60 >More info Ler hypocotyl hypocotyl Original data GEO bulk
69 rdr6-15 -0.64 >More info -0.47 >More info Col-0 Original data GEO bulk
70 AgNO3 3 h 0.47 >More info 0.64 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
71 rosette Dark Wounded 0.58 >More info 0.52 >More info rosette Dark Control Original data GEO bulk
72 Col-0 under 4 days salt 0.61 >More info 0.49 >More info Col-0 under control 4 days salt treatment rosette Original data
73 A. thaliana-A. lyrata hybrid -0.55 >More info -0.55 >More info A. thaliana mature leaves before flowering Original data GEO bulk
74 root cortex 40 mM NaCl 0.56 >More info 0.54 >More info root cortex Original data GEO bulk
75 IAA/inhibitor B Treated 0.55 >More info 0.55 >More info IAA Treated Original data GEO bulk
76 Cold Stress 24 h (root) 0.70 >More info 0.40 >More info Stress mock 24 h (root) Original data Stress treatments
77 line J2731-5 days control + 2 days salt s 0.57 >More info 0.52 >More info line J2731-7 days-control Original data
78 root cells cortex 140mM NaCl 48 hours 0.61 >More info 0.48 >More info root cells cortex standard 1 hour root cells cortex Original data
79 root cells columella root cap -Fe 0.73 >More info 0.36 >More info whole roots standard Original data GEO bulk
80 Seedling-HeatStressed TOTALmRNA 0.58 >More info 0.51 >More info Seedling-control TOTALmRNA seedling Original data
81 coi1-2 0.60 >More info 0.48 >More info Col-0 mock Whole seedling Original data GEO bulk
82 CMP 4hr 0.61 >More info 0.47 >More info Acetone 4hr root Original data GEO bulk
83 HSP90 Reduced RNAi-B1 0.51 >More info 0.57 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
84 root cells stele 140mM NaCl 20 hours 0.51 >More info 0.56 >More info root cells stele standard 1 hour root cells stele Original data
85 root cells endodermis and quiescent center -Fe 0.76 >More info 0.31 >More info whole roots standard Original data GEO bulk
86 Col0-PsmES4326-24hpi 0.46 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
87 triploid female excess -0.44 >More info -0.63 >More info tetraploid Original data GEO bulk
88 root longitudinal zone-1 NaCl 0.42 >More info 0.65 >More info root longitudinal zone-1 Original data GEO bulk
89 dorn1-1 Root 100 mM ATP 30 min -0.45 >More info -0.62 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
90 9 hr Hypoxia 1 hr recovery Total RNA 0.50 >More info 0.57 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
91 root cells cortex 140mM NaCl 8 hours 0.58 >More info 0.49 >More info root cells cortex standard 1 hour root cells cortex Original data
92 tetraploid 0.48 >More info 0.59 >More info diploid Original data GEO bulk
93 roottip hypoxia total 0.45 >More info 0.61 >More info roottip control total Original data GEO bulk
94 Leaf wounded 0.44 >More info 0.62 >More info Leaf control vegetative leaf Original data GEO bulk
95 WT+H2O2 0.51 >More info 0.54 >More info WT H2O2 Original data GEO bulk
96 SCL3 OE -0.55 >More info -0.50 >More info Col-0 whole root Original data GEO bulk
97 pmr5 0.59 >More info 0.46 >More info Col-0 Original data GEO bulk
98 flu over-tAPX 0.53 >More info 0.52 >More info WT Col Original data GEO bulk
99 Kas -Fe 24h Roots -0.53 >More info -0.51 >More info Kas +Fe 24h Roots Original data GEO bulk
100 Col-0 37C 0.62 >More info 0.42 >More info Col-0 22C Original data GEO bulk
101 OsRLCK253 expressing -0.61 >More info -0.43 >More info WT seedlings Original data GEO bulk
102 Kas-1 -Fe 24h -0.53 >More info -0.51 >More info Kas-1 +Fe 24h roots Original data GEO bulk
103 ABA DFPM 0.59 >More info 0.45 >More info control Original data GEO bulk
104 WT 30μM arsenate 8 hours. 0.45 >More info 0.59 >More info WT control (not supplemented). Original data
105 flu 0.51 >More info 0.52 >More info WT Col Original data GEO bulk
106 root cells endodermis 140mM NaCl 3 hours 0.57 >More info 0.46 >More info root cells endodermis standard 1 hour root cells endodermis Original data
107 RRE1 Chitin 0.70 >More info 0.33 >More info Chitin Original data GEO bulk
108 dor drought 0.57 >More info 0.46 >More info WT drought Original data GEO bulk
109 root cells cortex 140mM NaCl 20 hours 0.51 >More info 0.52 >More info root cells cortex standard 1 hour root cells cortex Original data
110 Fe starvation 72 h 0.41 >More info 0.62 >More info Control Original data GEO bulk
111 whole roots -Fe 72 hour 0.41 >More info 0.62 >More info whole roots standard Original data GEO bulk
112 9 hr Hypoxia Total RNA 0.53 >More info 0.49 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
113 GiantCell Root -0.62 >More info -0.40 >More info Control Root laser captured giant cells Original data GEO bulk
114 Cocultivation 8 hrs root 0.46 >More info 0.56 >More info Mock cocultivation 8 hrs root Root Original data
115 bbx24 in Simulated Shade -0.57 >More info -0.44 >More info WT in simulated shade shade seedling Original data
116 Leafminer locally damaged thaliana seedlings 0.57 >More info 0.44 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
117 CMV-WT 0.61 >More info 0.40 >More info Mock-At Aerial tissues Original data GEO bulk
118 bak1-3 +Pep2 10h 0.58 >More info 0.43 >More info WT +Pep2 10h Pep2 Original data GEO bulk
119 1.5 hr ammonium 0.60 >More info 0.41 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
120 Col-0 flu HL 3h 0.55 >More info 0.46 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
121 low CO2 + dark 0.50 >More info 0.51 >More info normal CO2 + light Original data GEO bulk
122 whole roots -Fe 48 hour 0.40 >More info 0.61 >More info whole roots standard Original data GEO bulk
123 siliques AtHb1 control 0.49 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
124 3x(p) 0.36 >More info 0.65 >More info 2x two week old seedlings Original data
125 RRE2 Chitin 0.63 >More info 0.37 >More info Chitin Original data GEO bulk
126 chito-octamer 0.55 >More info 0.45 >More info Col Mock Original data GEO bulk
127 35S::MBF1c 0.55 >More info 0.45 >More info control Original data GEO bulk
128 root cells cortex 140mM NaCl 3 hours 0.55 >More info 0.45 >More info root cells cortex standard 1 hour root cells cortex Original data
129 root cells -Fe 0.71 >More info 0.29 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
130 OE WRKY63.3 high light 0.56 >More info 0.44 >More info OE WRKY40.4 high light high light for 1h at 1000 μE m-2s-1 leaf Original data GEO bulk
131 Chitosan 3h Treatment 0.55 >More info 0.45 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
132 12m.KCl 0.40 >More info 0.60 >More info To. KCl 14 day old Roots Original data GEO bulk
133 root BA 12h 0.48 >More info 0.52 >More info root control 12h boron (5mM) root Original data GEO bulk
134 Seedling KUA1-IOX est 0.51 >More info 0.48 >More info Seedling KUA1-IOX mock Original data
135 root cells epidermis 140mM NaCl 48 hours 0.51 >More info 0.48 >More info root cells epidermis standard 1 hour root cells epidermis Original data
136 WT AntimycinA 3h 0.54 >More info 0.45 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
137 Mutant axr3-1 (IAA) 0.33 >More info 0.66 >More info Col (IAA) Original data GEO bulk
138 Selenate (root) 0.41 >More info 0.58 >More info Ws (root) Original data GEO bulk
139 M6PR transgenic leaf 100mM NaCl -0.40 >More info -0.59 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
140 9m.KCl 0.46 >More info 0.53 >More info To. KCl 14 day old Roots Original data GEO bulk
141 Root Selenate 0.41 >More info 0.58 >More info Root control 40 micromolar selenate Root Original data GEO bulk
142 Osmotic Stress 24 h (shoot) 0.50 >More info 0.48 >More info Stress mock 24 h (shoot) Original data Stress treatments
143 chito-tetramer 0.55 >More info 0.43 >More info Col Mock Original data GEO bulk
144 CMP 24hr 0.56 >More info 0.42 >More info Acetone 24hr root Original data GEO bulk
145 P.p 6hai 0.48 >More info 0.50 >More info At-Control roots Original data GEO bulk
146 bHLH122 ox -0.43 >More info -0.55 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
147 ein5-1 ski2-3 0.56 >More info 0.40 >More info Col-0 aerial tissue Original data
148 mutant acs4A (single mutant) -0.56 >More info -0.40 >More info col control (single mutant) Original data GEO bulk
149 stn7-1 -0.58 >More info -0.38 >More info Col-0 rosette leaves Original data GEO bulk
150 Ws 100mM NaCl 0.50 >More info 0.46 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
151 Heat and anoxia 0.54 >More info 0.42 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
152 Ws leaf 100mM NaCl 0.50 >More info 0.46 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
153 root protophloem 40 mM NaCl 0.54 >More info 0.42 >More info root protophloem Original data GEO bulk
154 Fenclorim 4hr 0.52 >More info 0.44 >More info Acetone 4hr root Original data GEO bulk
155 Phytoprostane A1 4 h 0.45 >More info 0.51 >More info Col-0 Original data GEO bulk
156 grf1/grf2/grf3 0.63 >More info 0.32 >More info WS Original data GEO bulk
157 cdkf:1-2 0.52 >More info 0.43 >More info wt seedling young seedlings Original data GEO bulk
158 max4 hypocotyl 0.51 >More info 0.44 >More info wt hypocotyl hypocotyl Original data GEO bulk
159 vtc2 mature somatic embryo 0.50 >More info 0.45 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
160 Anoxia 0.50 >More info 0.45 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
161 Shoot -K 0.51 >More info 0.44 >More info Control-shoot Original data GEO bulk
162 K starvation (shoot) 0.51 >More info 0.44 >More info Ws (shoot) Original data GEO bulk
163 35S::RSL4 -0.43 >More info -0.52 >More info Col-0 Control root Original data GEO bulk
164 ACN1-2 -0.41 >More info -0.54 >More info col-7 Original data GEO bulk
165 Kas-1 -Fe 48h -0.59 >More info -0.35 >More info Kas-1 +Fe 24h roots Original data GEO bulk
166 Fenclorim 24hr 0.57 >More info 0.37 >More info Acetone 24hr root Original data GEO bulk
167 Kas -Fe 48h Roots -0.59 >More info -0.35 >More info Kas +Fe 24h Roots Original data GEO bulk
168 seedling 24h after HZE atm-1 0.64 >More info 0.30 >More info seedling day 2 unirradiated atm-1 24h Original data
169 lug3 flowers 0.61 >More info 0.33 >More info WT-flowers flowers Original data GEO bulk
170 IMI 4mM 0.53 >More info 0.41 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
171 npr1 sni1 brca2a SA -0.43 >More info -0.51 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
172 vte2 leaves 0h LT -0.39 >More info -0.54 >More info Col leaves 0h LT h 9-11th adult leaves Original data
173 2 hr Hypoxia IP RNA 0.57 >More info 0.36 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
174 seedlings +5AC 0.57 >More info 0.36 >More info control seedlings 10-day old whole seedling Original data GEO bulk
175 HopZ1a treated ulp1c ulp1d 0.51 >More info 0.42 >More info col Original data GEO bulk
176 root longitudinal zone-4 -Fe 0.52 >More info 0.41 >More info root longitudinal zone-4 standard Original data GEO bulk
177 plant (tga2-5-6) 4h phytoprostane A1 0.34 >More info 0.59 >More info plant (tga2-5-6) 4h control Original data GEO bulk
178 R. solani AG8 0.41 >More info 0.52 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
179 Red/FR Light45min 0.14 >More info 0.78 >More info FarRed Light 45min Original data Light treatments
180 OsSAP11 expressing -0.39 >More info -0.53 >More info WT seedlings Original data GEO bulk
181 sicy-192 gun1-101 cotyledons 0.39 >More info 0.53 >More info WT cotyledons cotyledons Original data
182 Col-O high light 0.51 >More info 0.41 >More info Col-O bule light Original data GEO bulk
183 upf3 0.57 >More info 0.35 >More info WT whole plant Original data GEO bulk
184 root hypoxia total 0.42 >More info 0.50 >More info root control total Original data GEO bulk
185 columella auxin 0.51 >More info 0.40 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
186 DUO1 induced 12h 0.53 >More info 0.38 >More info 12hr-not-induced whole plant Original data GEO bulk
187 WT Shoot Hypoxia 0.51 >More info 0.40 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
188 HopZ1a treated 0.50 >More info 0.41 >More info col Original data GEO bulk
189 CDB1-Knockout -0.30 >More info -0.61 >More info WT Original data GEO bulk
190 seedling 6h after HZE WT 0.54 >More info 0.36 >More info seedling day 1 unirradiated WT 6h Original data
191 root cells endodermis 140mM NaCl 32 hours 0.53 >More info 0.37 >More info root cells endodermis standard 1 hour root cells endodermis Original data
192 Col-0-3h IAA 0.59 >More info 0.31 >More info Col-0-0h IAA whole plant Original data GEO bulk
193 Col leaf 100mM NaCl 0.50 >More info 0.39 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
194 Col leaf 100mM NaCl 0.50 >More info 0.39 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
195 Col 100mM NaCl 0.50 >More info 0.39 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
196 nia1nia2noa1-2 0.52 >More info 0.37 >More info Col-0 whole seedlings Original data GEO bulk
197 gul2-1 mutant 0.56 >More info 0.32 >More info WT 7 day-old whole seedlings Original data
198 ANAC102 knock-out -0.51 >More info -0.37 >More info Col-0 Original data GEO bulk
199 Col-0 SA 0.51 >More info 0.37 >More info Col-0 Original data GEO bulk
200 Nicotinamide-57hr 0.50 >More info 0.38 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
201 phyABCDE 4-day dark- 2 hours Rc50 0.59 >More info 0.29 >More info phyABCDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
202 toc1-1-81hr 0.31 >More info 0.56 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
203 35S:RPS4 eds1-2 2h -0.33 >More info -0.54 >More info 35S:RPS4 2h leaves Original data
204 Selenate (shoot) 0.50 >More info 0.37 >More info Ws (shoot) Original data GEO bulk
205 cngc4 0.50 >More info 0.37 >More info Ws-2 Seedlings Original data GEO bulk
206 rli 0.59 >More info 0.28 >More info WT whole plant Original data GEO bulk
207 Shoot Selenate 0.50 >More info 0.37 >More info Shoot control 40 micromolar selenate Shoot Original data GEO bulk
208 mutant acs5D (single mutant) -0.52 >More info -0.35 >More info col control (single mutant) Original data GEO bulk
209 seedling -S Exp 0.24 >More info 0.63 >More info seedling FN Exp seedling Original data
210 downy mildew cotyledons late stage 0.57 >More info 0.30 >More info mock inoculated Cotyledons Original data GEO bulk
211 Whole root - low pH 24H 0.30 >More info 0.57 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
212 DUO1 induced 24h 0.51 >More info 0.35 >More info 24hr-not-induced whole plant Original data GEO bulk
213 R. solani AG2-1 0.36 >More info 0.50 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
214 WT-SA 0.51 >More info 0.34 >More info WT-mock spray 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
215 root cells cortex -Fe 0.59 >More info 0.26 >More info whole roots standard Original data GEO bulk
216 mutant acs2C (single mutant) -0.62 >More info -0.23 >More info col control (single mutant) Original data GEO bulk
217 Roots Cd -0.56 >More info -0.28 >More info Roots control Cd Root Original data GEO bulk
218 OXUPB1-2 meristematic zone 0.53 >More info 0.31 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
219 gai Control 0.50 >More info 0.34 >More info Laer Control leaf discs Original data GEO bulk
220 aox1a(line) MLD stressed 0.53 >More info 0.31 >More info WT(Col0) MLD stressed (control aox1a) leaf Original data
221 oligomycin 1 h 0.32 >More info 0.52 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
222 Root -Cs 0.21 >More info 0.63 >More info Control-root Original data GEO bulk
223 hai1-2 low water potential 0.54 >More info 0.29 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
224 root hypoxia pRPL11C 0.54 >More info 0.29 >More info root hypoxia total hypoxia root Original data GEO bulk
225 P.syringae vir 4 h (leaf) 0.54 >More info 0.29 >More info Mock 4 h (leaf) Original data Elicitor treatments
226 shoot hypoxia p35S 0.27 >More info 0.56 >More info shoot hypoxia total Original data GEO bulk
227 CLO 4mM 0.62 >More info 0.21 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
228 mutant acs9B (single mutant) -0.61 >More info -0.22 >More info col control (single mutant) Original data GEO bulk
229 rosettes atx drought 0.58 >More info 0.25 >More info rosettes atx watered Original data GEO bulk
230 35S:RPS4 rrs1-11 T0 0.26 >More info 0.57 >More info 35S:RPS4 T0 leaves Original data
231 A. halleri -0.53 >More info -0.29 >More info A. thaliana mature leaves before flowering Original data GEO bulk
232 SLWF infested 0.58 >More info 0.24 >More info SLWF uninfested rosette tissue Original data GEO bulk
233 atmospheric CO2 high Mg shoot 0.52 >More info 0.29 >More info atmospheric CO2 normal Mg shoot Shoot Original data
234 atmospheric CO2 low Mg shoot 0.53 >More info 0.28 >More info atmospheric CO2 normal Mg shoot Shoot Original data
235 toc1-1-53hr 0.28 >More info 0.52 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
236 Whole root - low pH 3H 0.30 >More info 0.50 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
237 rcf1-1 cold 24h 0.30 >More info 0.50 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
238 CeO2 germinant -0.29 >More info -0.51 >More info Millipore Water germinant CeO2 seedling Original data
239 anac017-2 H2O2 3h -0.54 >More info -0.25 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
240 spx1 spx2 no Pi 0.58 >More info 0.21 >More info WT no Pi seedlings Original data
241 Col light-dark EtOH 0.58 >More info 0.21 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
242 RGA-GR-DEX 0.22 >More info 0.57 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
243 seedling 24h after HZE WT 0.55 >More info 0.23 >More info seedling day 2 unirradiated WT 24h Original data
244 npr1 sni1 ssn2 SA -0.50 >More info -0.28 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
245 atr zebularine 0.55 >More info 0.23 >More info WT zebularine shoot apical meristem Original data
246 root callus inducing medium 24h -0.58 >More info -0.20 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
247 root - 04% oxygen - 30min 0.24 >More info 0.54 >More info root - 21% oxygen - 30min Original data GEO bulk
248 bZIP1ko mutant N+Light- 0.16 >More info 0.62 >More info WT-sib N+Light- whole plant Original data GEO bulk
249 Dark 3day ivd 0.52 >More info 0.25 >More info 0h ivd Original data
250 mp-B4149 mutant IAA 0.60 >More info 0.17 >More info GR-bdl IAA Original data GEO bulk
251 root cells epidermis and lateral root cap -Fe 0.58 >More info 0.19 >More info whole roots standard Original data GEO bulk
252 Kas2 roots 2hr KNO3 nitrogen 0.58 >More info 0.18 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
253 root hypoxia pSUC2 0.50 >More info 0.26 >More info root hypoxia total hypoxia root Original data GEO bulk
254 Col-0-30min IAA 0.57 >More info 0.19 >More info Col-0-0h IAA whole plant Original data GEO bulk
255 clf-28 swn-7 0.50 >More info 0.26 >More info Col whole plant Original data GEO bulk
256 arf6 arf8 stage2 0.50 >More info 0.25 >More info WT stage2 Original data GEO bulk
257 rid4 IBA -0.54 >More info -0.21 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
258 Differentiation 24h -0.57 >More info -0.18 >More info Differentiation 0h leaves Original data
259 Laer pretreat GA Flg22 1h 0.04 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
260 toc1-1-73hr 0.25 >More info 0.50 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
261 bri1-116 0.02 >More info 0.73 >More info Col seedling Original data GEO bulk
262 Differentiation 36h -0.59 >More info -0.15 >More info Differentiation 0h leaves Original data
263 Col BTH 0.07 >More info 0.67 >More info Col rosettes Original data GEO bulk
264 FLIGHT TAGES 2B plate6 HYPOCOTYLS 0.56 >More info 0.17 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
265 Col-0-1h IAA 0.57 >More info 0.16 >More info Col-0-0h IAA whole plant Original data GEO bulk
266 Chemically 0.16 >More info 0.56 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
267 penta MeJA 1h 0.60 >More info 0.12 >More info Laer MeJA 1h leaf discs Original data GEO bulk
268 AsAKiin11 T3 -0.56 >More info -0.15 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
269 ein3 eil1 0.53 >More info 0.18 >More info Col-0 mock Whole seedling Original data GEO bulk
270 Tsu-1 -Fe 24h 0.17 >More info 0.53 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
271 Tsu -Fe 24h Roots 0.17 >More info 0.53 >More info Tsu +Fe 24h Roots Original data GEO bulk
272 FarRed Light 45min -0.00 >More info -0.70 >More info White Light 45min Original data Light treatments
273 root longitudinal zone-2 pH 4.6 0.18 >More info 0.52 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
274 21h-DC3000 hrpA -0.53 >More info -0.16 >More info 21h-DC3000 leaves Original data GEO bulk
275 Ts5 roots 2hr KCl control 0.58 >More info 0.11 >More info Col0 roots 2hr KCl control root Original data GEO bulk
276 Differentiation 48h -0.58 >More info -0.11 >More info Differentiation 0h leaves Original data
277 root longitudinal zone-4 pH 4.6 0.11 >More info 0.58 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
278 atr mock 0.51 >More info 0.17 >More info WT mock shoot apical meristem Original data
279 2hr continuous KNO3 SR cell 0.61 >More info 0.07 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
280 frb1 mutant 0.51 >More info 0.16 >More info WT whole seedling Original data GEO bulk
281 opr3 OPDA 0.5 h 0.15 >More info 0.52 >More info opr3 0 h Original data GEO bulk
282 3x(m) 0.06 >More info 0.61 >More info 2x two week old seedlings Original data
283 whole roots -Fe 12 hour 0.51 >More info 0.15 >More info whole roots standard Original data GEO bulk
284 siliques WT hypoxia 0.64 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
285 Col light-light EtOH 0.52 >More info 0.13 >More info Col light-light Mock 2.5% ethanol Original data GEO bulk
286 root callus inducing medium 48 h -0.55 >More info -0.10 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
287 2hr transitory KNO3 SR cell 0.60 >More info 0.05 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
288 desiccated mature pollen grains -0.12 >More info -0.52 >More info hydrated pollen grains Original data GEO bulk
289 seedling SPL13 -0.60 >More info -0.02 >More info seedling Col-0 Original data GEO bulk
290 SCR-GR Time 1H Dex 0.10 >More info 0.52 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
291 atmyc2 Seedling BL -0.08 >More info -0.54 >More info WT Seedling BL Original data GEO bulk
292 arr10 arr12 -0.53 >More info -0.08 >More info DMSO--WT DMSO roots Original data GEO bulk
293 eds16 whole leaf 3dpi -0.05 >More info -0.55 >More info Col whole leaf 3dpi whole leaf Original data GEO bulk
294 ms35 silique stage 9.10 -0.52 >More info -0.08 >More info Ler 8.9.10 anther and filament Original data GEO bulk
295 bZIP TDNA mutant -0.51 >More info -0.09 >More info Col-WT mature pollen Original data GEO bulk
296 Shoot apex inflorescence (after bolting) -0.05 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
297 eto1-4 + AVG 0.51 >More info 0.08 >More info eto1-4 whole seedling Original data GEO bulk
298 gpa1 +ABA GC -0.01 >More info -0.58 >More info Col-0 +ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
299 A2hsfa1-ox in quadruple mutant -0.56 >More info -0.02 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
300 ms1 unpollinated 0.50 >More info 0.06 >More info WT 8h-pollinated pistil Original data GEO bulk
301 root callus inducing medium 96 h -0.50 >More info -0.06 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
302 SA 4mM 0.56 >More info 0.00 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
303 seed germinating in countinuous light 24h SL -0.12 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
304 -Sulfate 2 h 0.53 >More info 0.01 >More info Mock 2 h (1500uM sulfate) Original data Response to sulfate limitation
305 Col-0 24hpi A. brassicicola 0.51 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
306 2hr KCl control SR cell 0.60 >More info -0.08 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
307 CCA1-ox 6am non-polysomal 0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
308 10min Reillumination Total RNA -0.50 >More info -0.00 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
309 NFA8 roots 2hr KCl control 0.50 >More info -0.02 >More info Col0 roots 2hr KCl control root Original data GEO bulk
310 35S::PI ap3-3 35S::AP-GR +DEX -0.03 >More info 0.51 >More info 0hr DEX Original data GEO bulk
311 phyABDE 4-day dark- 2 hours Rc50 0.51 >More info -0.04 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
312 12h-DC3000 avrRpm1 0.55 >More info -0.10 >More info 12h-DC3000 leaves Original data GEO bulk
313 QC pSCR 3h BL -0.14 >More info 0.59 >More info QC pSCR 0h BL brassinosteroid root Original data
314 VND6 12h 0.51 >More info -0.10 >More info wt 12h Original data GEO bulk
315 2 h EST -0.55 >More info 0.14 >More info mock 2 h EST seedling Original data GEO bulk
316 IAA7mII over-expressor IAA Treated -0.28 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
317 Col PSTDC3000 24h 0.52 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
318 irradiated leaf (WT 5d) 0.51 >More info -0.26 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk