4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Col-0 37C
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List of experiments correlated with "Col-0 37C"  Help Download transcriptome of top 30
Score Experiment Correlation from
Col-0 37C		 Correlation to
Col-0 37C		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Col-0 37C 1.00 >More info 1.00 >More info Col-0 22C Original data GEO bulk
2 Col-0 HS 0.91 >More info 0.95 >More info Col-0 control heat shocked seedling Original data GEO bulk
3 WT (Col-0) heat shock 0.91 >More info 0.95 >More info WT (Col-0) whole seedling Original data GEO bulk
4 Ws HS 0.90 >More info 0.92 >More info Ws control heat shocked seedling Original data GEO bulk
5 dark-hs 0.85 >More info 0.88 >More info dark-control seedling Original data
6 Seedling-HeatStressed TOTALmRNA 0.84 >More info 0.89 >More info Seedling-control TOTALmRNA seedling Original data
7 Heat 0.86 >More info 0.86 >More info Control 90 minutes at 38°C. Original data GEO bulk
8 Heat and anoxia 0.86 >More info 0.85 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
9 Seedling-HeatStressed POLYSOMESmRNA 0.83 >More info 0.88 >More info Seedling-control POLYSOMESmRNA seedling Original data
10 QK HS 0.75 >More info 0.87 >More info QK control heat shocked seedling Original data GEO bulk
11 light-hs 0.74 >More info 0.84 >More info light-control seedling Original data
12 Anoxia 0.80 >More info 0.74 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
13 HS 0.75 >More info 0.79 >More info noneHS Original data GEO bulk
14 Heat shock 20%Inhibition 0.76 >More info 0.73 >More info Heat shock baseline Photosynthesis at 20% inhibition from optimum leaf first fully expanded Original data GEO bulk
15 WT heat shock 0.70 >More info 0.73 >More info WT untreated above-ground parts Original data GEO bulk
16 WT 30μM arsenate 8 hours. 0.73 >More info 0.70 >More info WT control (not supplemented). Original data
17 9 hr Hypoxia 1 hr recovery Total RNA 0.75 >More info 0.66 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
18 plant (tga2-5-6) 4h phytoprostane A1 0.67 >More info 0.71 >More info plant (tga2-5-6) 4h control Original data GEO bulk
19 9 hr Hypoxia Total RNA 0.75 >More info 0.60 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
20 9 hr Hypoxia 1 hr recovery IP RNA 0.70 >More info 0.65 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
21 Col-0 low oxygen 0.73 >More info 0.60 >More info Col-0 control low oxygen root Original data GEO bulk
22 WT seedlings MV 0.70 >More info 0.61 >More info WT seedlings control Seedlings Original data GEO bulk
23 WT+H2O2 0.68 >More info 0.63 >More info WT H2O2 Original data GEO bulk
24 inhibitor A Treated 0.66 >More info 0.65 >More info Negative Control Original data GEO bulk
25 (Col-0)+200 uM As 0.66 >More info 0.64 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
26 Heat shock 30%Inhibition 0.69 >More info 0.61 >More info Heat shock baseline Photosynthesis at 30% inhibition from optimum leaf first fully expanded Original data GEO bulk
27 IAA/inhibitor A Treated 0.69 >More info 0.56 >More info IAA Treated Original data GEO bulk
28 2 hr Hypoxia Total RNA 0.64 >More info 0.61 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
29 Col-0 2HS 0.61 >More info 0.63 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
30 9 hr Hypoxia IP RNA 0.66 >More info 0.58 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
31 hsfa1 quadruple mutant heat shock -0.63 >More info -0.59 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
32 Phytoprostane A1 4 h 0.63 >More info 0.56 >More info Col-0 Original data GEO bulk
33 flu 0.56 >More info 0.61 >More info WT Col Original data GEO bulk
34 NJ15 0.50 >More info 0.67 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
35 oligomycin 4 h 0.60 >More info 0.55 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
36 (Col-0)+100 uM As 0.59 >More info 0.56 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
37 inhibitor B Treated 0.62 >More info 0.53 >More info Negative Control Original data GEO bulk
38 Protoplast Induced 0.44 >More info 0.71 >More info Uninduced Original data GEO bulk
39 rosette Light Wounded 0.47 >More info 0.67 >More info rosette Light Control Original data GEO bulk
40 5-Triiodobenzoic acid3 h 0.59 >More info 0.53 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
41 Cocultivation 8 hrs root 0.53 >More info 0.59 >More info Mock cocultivation 8 hrs root Root Original data
42 IMI 4mM 0.58 >More info 0.54 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
43 dicamba 0.55 >More info 0.57 >More info WT mock whole seedling Original data GEO bulk
44 WT Seedling BL+ABA 0.57 >More info 0.54 >More info WT Seedling BL Original data GEO bulk
45 flu over-tAPX 0.53 >More info 0.58 >More info WT Col Original data GEO bulk
46 CMP 4hr 0.57 >More info 0.53 >More info Acetone 4hr root Original data GEO bulk
47 Heat no recovery 0.63 >More info 0.47 >More info Mock no recovery seedling Original data GEO bulk
48 anac017-2 AntimycinA 3h -0.55 >More info -0.55 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
49 Col-0 flu HL 3h 0.57 >More info 0.53 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
50 root hypoxia total 0.62 >More info 0.48 >More info root control total Original data GEO bulk
51 TNT-seedlings 0.42 >More info 0.68 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
52 Col leaf scrape 5 dpi 0.55 >More info 0.54 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
53 Selenate (root) 0.50 >More info 0.59 >More info Ws (root) Original data GEO bulk
54 Root Selenate 0.50 >More info 0.59 >More info Root control 40 micromolar selenate Root Original data GEO bulk
55 Heat 6h 0.65 >More info 0.43 >More info At mock rosettes - 5 leaves stage Original data
56 Red/FR Light45min 0.28 >More info 0.80 >More info FarRed Light 45min Original data Light treatments
57 rosette Dark Wounded 0.39 >More info 0.69 >More info rosette Dark Control Original data GEO bulk
58 Heat shock optimum 0.43 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
59 1 h Light Total RNA -0.45 >More info -0.63 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
60 1h +Pi -0.45 >More info -0.62 >More info 1h -Pi root Original data GEO bulk
61 Leaf wounded 0.35 >More info 0.72 >More info Leaf control vegetative leaf Original data GEO bulk
62 WT flg22 2h 0.53 >More info 0.53 >More info WT 0h Leaf tissue Original data GEO bulk
63 ahg1-1 0.38 >More info 0.67 >More info ABA control Original data GEO bulk
64 WT AntimycinA 3h 0.48 >More info 0.57 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
65 24h SL WT -0.53 >More info -0.51 >More info 0 h WT seed Original data
66 Heat 6h-recover 48h -0.68 >More info -0.36 >More info Heat 6h rosettes - 5 leaves stage Original data
67 Col-Luc WT 3h antimycin A 0.42 >More info 0.62 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
68 whole roots 140 mM NaCl 30 minutes 0.42 >More info 0.62 >More info whole roots standard Original data GEO bulk
69 Col0-PsmES4326-24hpi 0.42 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
70 whole roots 140 mM NaCl 1 hour 0.44 >More info 0.59 >More info whole roots standard Original data GEO bulk
71 GRX-overexpression seedlings MV -0.46 >More info -0.57 >More info WT seedlings MV Seedlings Original data GEO bulk
72 mbd11 mutant thaliana 10-day-old seedling 0.53 >More info 0.49 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
73 17 2h unlabelled -0.54 >More info -0.48 >More info 27 1h unlabelled 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
74 SA 0.57 >More info 0.45 >More info WT mock Whole seedling Original data GEO bulk
75 24h SL Attim 17-1 1 -0.53 >More info -0.49 >More info 0 h Attim 17-1 1 seed Original data
76 root cells endodermis and quiescent center -Fe 0.50 >More info 0.52 >More info whole roots standard Original data GEO bulk
77 gun1gun5 far-red pretreated -0.50 >More info -0.52 >More info WT far-red pretreated Original data GEO bulk
78 DFPM 0.52 >More info 0.50 >More info control Original data GEO bulk
79 csn5 (csn5a-2 csn5b) light 0.62 >More info 0.40 >More info WT light Original data GEO bulk
80 Salt Stress 24 h (root) 0.52 >More info 0.50 >More info Stress mock 24 h (root) Original data Stress treatments
81 Cycloheximide 3 h 0.44 >More info 0.58 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
82 hai1-2 low water potential 0.51 >More info 0.50 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
83 embryo paclobutrazol 0.55 >More info 0.46 >More info embryo-control paclobutrazol embryo Original data GEO bulk
84 gai Control 0.57 >More info 0.43 >More info Laer Control leaf discs Original data GEO bulk
85 roottip hypoxia total 0.52 >More info 0.48 >More info roottip control total Original data GEO bulk
86 P.p 6hai 0.48 >More info 0.52 >More info At-Control roots Original data GEO bulk
87 rcf1-1 cold 24h 0.43 >More info 0.57 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
88 Rose Bengal 0.5 uM 0.41 >More info 0.59 >More info Control RB and PER Rose Bengal Original data
89 FLIGHT TAGESB plate6 ROOTS 0.39 >More info 0.61 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
90 WT 2-4h Xanthomonas 0.59 >More info 0.40 >More info WT T0 Original data GEO bulk
91 hira-root -0.56 >More info -0.43 >More info WT-root root Original data
92 ataf1-1 mutant Col-0 Bgh inoculated 0.51 >More info 0.48 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
93 rosettes WT drought 0.44 >More info 0.55 >More info rosettes WT watered Original data GEO bulk
94 WT H2O2 3h 0.47 >More info 0.52 >More info WT water 3h 3h_H2O2 Original data GEO bulk
95 aba1 hypocotyl 0.42 >More info 0.57 >More info Ler hypocotyl hypocotyl Original data GEO bulk
96 ABA control 0.31 >More info 0.68 >More info No ABA control Original data GEO bulk
97 WT NAA/flg 1h 0.50 >More info 0.48 >More info WT 0h Leaf tissue Original data GEO bulk
98 IAA/inhibitor B Treated 0.50 >More info 0.48 >More info IAA Treated Original data GEO bulk
99 gul2-1 mutant 0.51 >More info 0.47 >More info WT 7 day-old whole seedlings Original data
100 35S:RPS4 eds1-2 8h -0.47 >More info -0.51 >More info 35S:RPS4 8h leaves Original data
101 npr1 sni1 ssn2 SA -0.42 >More info -0.55 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
102 pil5 red light 0.55 >More info 0.41 >More info Col-0 red light Original data GEO bulk
103 17 2h total -0.50 >More info -0.46 >More info 27 1h total 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
104 embryo ABA 0.50 >More info 0.46 >More info embryo-control ABA embryo Original data GEO bulk
105 clf-28 swn-7 0.44 >More info 0.52 >More info Col whole plant Original data GEO bulk
106 root protoplasts 40 mM NaCl 0.41 >More info 0.55 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
107 pepr1-1 Pepr2-3 +Pep2 2h -0.39 >More info -0.56 >More info WT +Pep2 2h Pep2 Original data GEO bulk
108 WT 90-105 min Xanthomonas 0.54 >More info 0.41 >More info WT T0 Original data GEO bulk
109 sicy-192 gun1-101 cotyledons 0.54 >More info 0.41 >More info WT cotyledons cotyledons Original data
110 Methyl Jasmonate 0.5 h 0.37 >More info 0.58 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
111 FarRed Light 45min -0.29 >More info -0.66 >More info White Light 45min Original data Light treatments
112 wnk8-1 untreated -0.36 >More info -0.59 >More info Col-0 untreated seedlings Original data GEO bulk
113 toc1-1-65hr 0.42 >More info 0.53 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
114 Pst-DC3000(avrRpm1)-4hpi 0.38 >More info 0.56 >More info Pst-DC3000-4hpi Original data GEO bulk
115 wnk8-3 untreated -0.43 >More info -0.51 >More info Col-0 untreated seedlings Original data GEO bulk
116 chito-octamer 0.40 >More info 0.53 >More info Col Mock Original data GEO bulk
117 LTN008-2 aza-dc 0.50 >More info 0.43 >More info LTN012-2 Mock Original data
118 WT-Dry 0.29 >More info 0.64 >More info WT-CK dehydration treatment 1h Original data
119 (Ws-2)+100 uM As 0.53 >More info 0.39 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
120 rdr6-15 -0.37 >More info -0.55 >More info Col-0 Original data GEO bulk
121 bHLH122 ox -0.28 >More info -0.64 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
122 phyABCDE Dark 0.51 >More info 0.40 >More info WT Dark Dark whole seedling Original data GEO bulk
123 AvrRpt2 Col-0 6hpi 0.51 >More info 0.40 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
124 cell culture 4 h phytoprostane A1 0.58 >More info 0.33 >More info cell culture 4 h control Original data GEO bulk
125 Nicotinamide-85hr 0.50 >More info 0.40 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
126 root Dosed gold 0.51 >More info 0.39 >More info root No gold .125 mM gold 24 h roots Original data
127 0.125 mM gold 24 h 0.51 >More info 0.39 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
128 WT 24H Cold 0.40 >More info 0.50 >More info WT control Original data GEO bulk
129 35S:RPS4 eds1-2 2h -0.27 >More info -0.63 >More info 35S:RPS4 2h leaves Original data
130 Laer pretreat GA Flg22 1h 0.19 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
131 RRE2 Chitin 0.55 >More info 0.34 >More info Chitin Original data GEO bulk
132 plant (Col-0) 4h phytoprostane A1 0.52 >More info 0.37 >More info plant (tga2-5-6) 4h control Original data GEO bulk
133 oligomycin 1 h 0.39 >More info 0.50 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
134 abi1 hypocotyl 0.22 >More info 0.67 >More info Ler hypocotyl hypocotyl Original data GEO bulk
135 downy mildew cotyledons late stage 0.66 >More info 0.22 >More info mock inoculated Cotyledons Original data GEO bulk
136 Laer treat paclobutrazol (PAC) 0.53 >More info 0.35 >More info Laer Control leaf discs Original data GEO bulk
137 Osmotic Stress 24 h (root) 0.51 >More info 0.37 >More info Stress mock 24 h (root) Original data Stress treatments
138 seedling 24h after HZE atm-1 0.22 >More info 0.66 >More info seedling day 2 unirradiated atm-1 24h Original data
139 npr1 sni1 brca2a SA -0.31 >More info -0.56 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
140 csn3-1 light 0.52 >More info 0.35 >More info WT light Original data GEO bulk
141 Col light-dark EtOH 0.53 >More info 0.33 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
142 15m.KCl 0.32 >More info 0.54 >More info To. KCl 14 day old Roots Original data GEO bulk
143 12m.KCl 0.27 >More info 0.59 >More info To. KCl 14 day old Roots Original data GEO bulk
144 anac017-2 water 3h 0.35 >More info 0.51 >More info WT water 3h 3h_water Original data GEO bulk
145 Salt Stress 24 h (shoot) 0.50 >More info 0.35 >More info Stress mock 24 h (shoot) Original data Stress treatments
146 sfr6 drought -0.23 >More info -0.62 >More info WT drought All aerial tissue Original data GEO bulk
147 desiccated mature pollen grains -0.24 >More info -0.61 >More info hydrated pollen grains Original data GEO bulk
148 Col-0 shade 0.35 >More info 0.50 >More info Col-0 light seedlings Original data GEO bulk
149 chito-tetramer 0.33 >More info 0.51 >More info Col Mock Original data GEO bulk
150 current injection 0.29 >More info 0.55 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
151 root cells cortex 140mM NaCl 1 hour 0.50 >More info 0.32 >More info root cells cortex standard 1 hour root cells cortex Original data
152 atgsnor1-1 -0.29 >More info -0.53 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
153 pXVE:HA-EDM2-a untreated -0.31 >More info -0.50 >More info Col-0 untreated seedlings Original data GEO bulk
154 npr1 sni1 SA 0.22 >More info 0.59 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
155 WT+chitooctaose 0.21 >More info 0.60 >More info WT+water chitooctaose seedlings Original data GEO bulk
156 toc1-1-89hr 0.29 >More info 0.51 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
157 1 h Light IP RNA -0.23 >More info -0.57 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
158 Methyl Jasmonate 1 h 0.29 >More info 0.50 >More info Mock 1 h Original data Basic hormone treatment of seedlings
159 WT 3H Cold 0.22 >More info 0.57 >More info WT control Original data GEO bulk
160 Col BTH 0.11 >More info 0.67 >More info Col rosettes Original data GEO bulk
161 cat2-2; 8h switch to ambient CO2 concentrations; 0.23 >More info 0.55 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
162 Roots Cd -0.50 >More info -0.27 >More info Roots control Cd Root Original data GEO bulk
163 ex2 flu dark 8hours/30 minute light 0.21 >More info 0.56 >More info col dark 8hours/30 minute light Original data GEO bulk
164 leaf blade in D 0.27 >More info 0.50 >More info leaf blade in WL leaf blades Original data GEO bulk
165 bri1-116 0.04 >More info 0.73 >More info Col seedling Original data GEO bulk
166 root longitudinal zone-4 pH 4.6 0.22 >More info 0.54 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
167 CDB1-Knockout -0.11 >More info -0.65 >More info WT Original data GEO bulk
168 DUO1 induced 12h 0.21 >More info 0.53 >More info 12hr-not-induced whole plant Original data GEO bulk
169 Norflurazon 0.61 >More info 0.11 >More info Col-0 Original data GEO bulk
170 Norflurazon 0.61 >More info 0.11 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
171 flu dark 8hours/30 minute light 0.18 >More info 0.54 >More info col dark 8hours/30 minute light Original data GEO bulk
172 siliques AtHb1 control 0.20 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
173 Leafminer damaged seedlings 0.15 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
174 WT Shoot Hypoxia 0.53 >More info 0.18 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
175 GA 120min 0.20 >More info 0.50 >More info CON120 GA 120 min. root tips Original data GEO bulk
176 4C 1h 0.11 >More info 0.55 >More info 4C 0h Original data GEO bulk
177 IAA7mII over-expressor IAA Treated -0.03 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
178 AsAKiin11 T2 0.07 >More info 0.58 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
179 Col-0 DCA 6d -0.13 >More info -0.50 >More info Col-0 MOCK 6d Original data GEO bulk
180 seed germinating in countinuous light 24h SL -0.05 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
181 ACN1-2 -0.12 >More info -0.50 >More info col-7 Original data GEO bulk
182 ex1 flu dark 8hours/30 minute light 0.03 >More info 0.58 >More info col dark 8hours/30 minute light Original data GEO bulk
183 atmyc2 Seedling BL 0.10 >More info -0.71 >More info WT Seedling BL Original data GEO bulk
184 CLO 4mM 0.52 >More info 0.08 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
185 SLWF infested 0.61 >More info -0.02 >More info SLWF uninfested rosette tissue Original data GEO bulk
186 Shoot apex inflorescence (after bolting) -0.09 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
187 4C 2h(SOIL) 0.02 >More info 0.54 >More info 4C 0h(SOIL) Original data GEO bulk
188 opr3 JA 0.5 h 0.01 >More info 0.52 >More info opr3 0 h Original data GEO bulk
189 CCA1-ox 6am non-polysomal -0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
190 triploid female excess 0.07 >More info -0.52 >More info tetraploid Original data GEO bulk
191 gacA 0.10 >More info -0.52 >More info PA14 seedlings Original data GEO bulk
192 MPK6 ox Shoot Hypoxia 0.55 >More info -0.14 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk