4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on hira-root
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List of experiments correlated with "hira-root"  Help Download transcriptome of top 30
Score Experiment Correlation from
hira-root		 Correlation to
hira-root		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 hira-root 1.00 >More info 1.00 >More info WT-root root Original data
2 Cocultivation 8 hrs root -0.82 >More info -0.76 >More info Mock cocultivation 8 hrs root Root Original data
3 Whole root - low pH 12H -0.76 >More info -0.77 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
4 root Dosed gold -0.82 >More info -0.68 >More info root No gold .125 mM gold 24 h roots Original data
5 0.125 mM gold 24 h -0.82 >More info -0.68 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
6 6h +Pi 0.74 >More info 0.75 >More info 6h -Pi root Original data GEO bulk
7 P.p 30hai -0.81 >More info -0.66 >More info At-Control roots Original data GEO bulk
8 R. solani AG8 -0.73 >More info -0.70 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
9 AgNO3 3 h -0.72 >More info -0.70 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
10 8hr-pH4.5 -0.68 >More info -0.73 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
11 SA -0.75 >More info -0.66 >More info WT mock Whole seedling Original data GEO bulk
12 dicamba -0.73 >More info -0.67 >More info WT mock whole seedling Original data GEO bulk
13 9 hr Hypoxia 1 hr recovery Total RNA -0.70 >More info -0.68 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
14 P.p 6hai -0.78 >More info -0.59 >More info At-Control roots Original data GEO bulk
15 Whole root - low pH 24H -0.70 >More info -0.67 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
16 TNT-seedlings -0.63 >More info -0.74 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
17 bbx24 in Simulated Shade 0.64 >More info 0.71 >More info WT in simulated shade shade seedling Original data
18 24h +Pi 0.72 >More info 0.63 >More info 24h -Pi root Original data GEO bulk
19 P.p 10.5hai -0.79 >More info -0.54 >More info At-Control roots Original data GEO bulk
20 P.p 2.5hai -0.71 >More info -0.62 >More info At-Control roots Original data GEO bulk
21 seedlings-week-old RECA1-overexpressing
transgenic		 -0.74 >More info -0.58 >More info seedlings-week-old Col-0 seedlings Original data
22 WT 30μM arsenate 8 hours. -0.67 >More info -0.64 >More info WT control (not supplemented). Original data
23 toc1-1-81hr -0.61 >More info -0.70 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
24 Whole root - low pH 6H -0.57 >More info -0.73 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
25 Col-0 low oxygen -0.63 >More info -0.65 >More info Col-0 control low oxygen root Original data GEO bulk
26 toc1-1-85hr -0.55 >More info -0.73 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
27 Whole root - low pH 3H -0.58 >More info -0.70 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
28 R. solani AG2-1 -0.62 >More info -0.65 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
29 pepr1-1 Pepr2-3 +Pep2 10h 0.68 >More info 0.56 >More info WT +Pep2 10h Pep2 Original data GEO bulk
30 Nicotinamide-81hr -0.63 >More info -0.60 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
31 9 hr Hypoxia Total RNA -0.62 >More info -0.61 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
32 IAA 2h -0.54 >More info -0.68 >More info control 2h root Original data GEO bulk
33 Phytoprostane A1 4 h -0.59 >More info -0.63 >More info Col-0 Original data GEO bulk
34 IAA 24h -0.52 >More info -0.70 >More info control 24h root Original data GEO bulk
35 plant (tga2-5-6) 4h phytoprostane A1 -0.51 >More info -0.71 >More info plant (tga2-5-6) 4h control Original data GEO bulk
36 seedlings +5AC -0.66 >More info -0.55 >More info control seedlings 10-day old whole seedling Original data GEO bulk
37 root longitudinal zone-1 pH 4.6 -0.67 >More info -0.54 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
38 (Col-0)+100 uM As -0.57 >More info -0.64 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
39 (Col-0)+200 uM As -0.58 >More info -0.63 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
40 1h +Pi 0.47 >More info 0.74 >More info 1h -Pi root Original data GEO bulk
41 dorn1-1 Root 100 mM ATP 30 min 0.56 >More info 0.64 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
42 bak1-3 +Pep2 10h -0.70 >More info -0.49 >More info WT +Pep2 10h Pep2 Original data GEO bulk
43 9m.KCl -0.66 >More info -0.53 >More info To. KCl 14 day old Roots Original data GEO bulk
44 5-Triiodobenzoic acid3 h -0.52 >More info -0.67 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
45 Col in Pi deficiency medium -0.49 >More info -0.70 >More info Col in control medium root Original data GEO bulk
46 oas-a1.1 Cd 18h -0.51 >More info -0.67 >More info Cd 18h root Root Original data GEO bulk
47 Selenate (root) -0.54 >More info -0.64 >More info Ws (root) Original data GEO bulk
48 Root Selenate -0.54 >More info -0.64 >More info Root control 40 micromolar selenate Root Original data GEO bulk
49 BLM+INA -0.62 >More info -0.56 >More info CK BLM and INA seedling Original data
50 whole roots 140 mM NaCl 1 hour -0.61 >More info -0.57 >More info whole roots standard Original data GEO bulk
51 C24-1h IAA -0.60 >More info -0.57 >More info C24-0h IAA whole plant Original data GEO bulk
52 nia1nia2 -0.65 >More info -0.51 >More info Col-0 whole seedlings Original data GEO bulk
53 CMP 24hr -0.66 >More info -0.50 >More info Acetone 24hr root Original data GEO bulk
54 Chitosan 3h Treatment -0.65 >More info -0.51 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
55 Fenclorim 24hr -0.72 >More info -0.44 >More info Acetone 24hr root Original data GEO bulk
56 whole roots -Fe 72 hour -0.56 >More info -0.59 >More info whole roots standard Original data GEO bulk
57 root cells endodermis 140mM NaCl 3 hours -0.57 >More info -0.58 >More info root cells endodermis standard 1 hour root cells endodermis Original data
58 Mutant axr3-1 -0.56 >More info -0.59 >More info Col Original data GEO bulk
59 Fe starvation 72 h -0.56 >More info -0.59 >More info Control Original data GEO bulk
60 Fenclorim 4hr -0.70 >More info -0.45 >More info Acetone 4hr root Original data GEO bulk
61 whole roots 140 mM NaCl 30 minutes -0.63 >More info -0.51 >More info whole roots standard Original data GEO bulk
62 Col-0 Root 100 mM ATP 30 min -0.58 >More info -0.55 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
63 Mutant axr3-1 (IAA) -0.51 >More info -0.62 >More info Col (IAA) Original data GEO bulk
64 bak1-3 +Pep2 2h -0.52 >More info -0.61 >More info WT +Pep2 2h Pep2 Original data GEO bulk
65 OXUPB1-2 meristematic zone -0.52 >More info -0.61 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
66 inhibitor A Treated -0.52 >More info -0.61 >More info Negative Control Original data GEO bulk
67 Chemically -0.35 >More info -0.78 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
68 root longitudinal zone-2 low sulfur 0.53 >More info 0.59 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
69 seedling 24h after HZE atm-1 -0.50 >More info -0.62 >More info seedling day 2 unirradiated atm-1 24h Original data
70 inhibitor B Treated -0.51 >More info -0.60 >More info Negative Control Original data GEO bulk
71 9 hr Hypoxia 1 hr recovery IP RNA -0.59 >More info -0.52 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
72 root epidermis and lateral root cap pH4.6 -0.61 >More info -0.50 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
73 Nicotinamide-57hr -0.62 >More info -0.49 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
74 SCL3 OE 0.59 >More info 0.51 >More info Col-0 whole root Original data GEO bulk
75 WT-16ºC 0.56 >More info 0.54 >More info WT-23ºC Original data GEO bulk
76 DFPM -0.63 >More info -0.47 >More info control Original data GEO bulk
77 Octopus overexpressor 35SDYG25 -0.53 >More info -0.56 >More info WS Original data GEO bulk
78 toc1-1-65hr -0.59 >More info -0.50 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
79 BLM -0.59 >More info -0.50 >More info CK BLM seedling Original data
80 CMP 4hr -0.61 >More info -0.48 >More info Acetone 4hr root Original data GEO bulk
81 root columella root cap pH4.6 -0.60 >More info -0.49 >More info root columella root cap pH5.7 Original data GEO bulk
82 root cells endodermis 140mM NaCl 48 hours -0.52 >More info -0.57 >More info root cells endodermis standard 1 hour root cells endodermis Original data
83 csn5 (csn5a-2 csn5b) light -0.58 >More info -0.51 >More info WT light Original data GEO bulk
84 WT+H2O2 -0.49 >More info -0.60 >More info WT H2O2 Original data GEO bulk
85 Oxidative Stress 3 h (root) 0.57 >More info 0.51 >More info Stress mock 3 h (root) Original data Stress treatments
86 Roots Cd 0.56 >More info 0.52 >More info Roots control Cd Root Original data GEO bulk
87 IAA/inhibitor B Treated -0.50 >More info -0.58 >More info IAA Treated Original data GEO bulk
88 cop1 Seedling BL -0.51 >More info -0.57 >More info WT Seedling BL Original data GEO bulk
89 WT chitooctaose -0.61 >More info -0.47 >More info WT water Original data GEO bulk
90 nia1nia2noa1-2 -0.62 >More info -0.46 >More info Col-0 whole seedlings Original data GEO bulk
91 toc1-1-57hr -0.62 >More info -0.46 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
92 WT seedlings MV -0.54 >More info -0.53 >More info WT seedlings control Seedlings Original data GEO bulk
93 Seedling KUA1-IOX est -0.54 >More info -0.53 >More info Seedling KUA1-IOX mock Original data
94 AtLysM RLK1 mutant water -0.56 >More info -0.51 >More info WT water Original data GEO bulk
95 OXUPB1-2 elongation zone -0.54 >More info -0.53 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
96 4C 1h -0.44 >More info -0.63 >More info 4C 0h Original data GEO bulk
97 IAA/inhibitor A Treated -0.58 >More info -0.49 >More info IAA Treated Original data GEO bulk
98 phr1 Shoot-Pi -0.58 >More info -0.49 >More info WT Root-Pi shoots Original data GEO bulk
99 Nicotinamide-61hr -0.57 >More info -0.50 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
100 toc1-1-89hr -0.49 >More info -0.58 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
101 Col-0 under 4 days salt -0.54 >More info -0.52 >More info Col-0 under control 4 days salt treatment rosette Original data
102 IAA 0.5h -0.51 >More info -0.55 >More info control 0.5h root Original data GEO bulk
103 whole roots -Fe 48 hour -0.51 >More info -0.55 >More info whole roots standard Original data GEO bulk
104 Cycloheximide 3 h -0.54 >More info -0.51 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
105 Salt Stress 24 h (root) -0.55 >More info -0.50 >More info Stress mock 24 h (root) Original data Stress treatments
106 Whole root - low pH 1H -0.41 >More info -0.64 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
107 NJ15 -0.44 >More info -0.61 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
108 oligomycin 4 h -0.57 >More info -0.48 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
109 Primisulfuron EC50 -0.58 >More info -0.47 >More info Carrier (primisulfuron) Original data GEO bulk
110 root endodermis -S 0.48 >More info 0.57 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
111 Nicotinamide-85hr -0.54 >More info -0.50 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
112 embryo paclobutrazol -0.59 >More info -0.45 >More info embryo-control paclobutrazol embryo Original data GEO bulk
113 B.cinerea 18 h infection -0.37 >More info -0.67 >More info Mock 18 h Original data Botrytis cinerea infection
114 root - 01% oxygen - 48h -0.40 >More info -0.64 >More info root - 21% oxygen - 48h Original data GEO bulk
115 root hypoxia total -0.42 >More info -0.62 >More info root control total Original data GEO bulk
116 Heat and anoxia -0.46 >More info -0.58 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
117 Col-0 wt Hypoxic -0.41 >More info -0.63 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
118 root longitudinal zone-2 pH 4.6 -0.47 >More info -0.57 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
119 Botrytis cinerea 18h -0.37 >More info -0.67 >More info control 18h Original data GEO bulk
120 IAA 4h -0.43 >More info -0.61 >More info control 4h root Original data GEO bulk
121 ABA DFPM -0.61 >More info -0.42 >More info control Original data GEO bulk
122 Anoxia -0.46 >More info -0.57 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
123 Col-0 2h NAA -0.44 >More info -0.59 >More info Col-0 6h MOCK Original data GEO bulk
124 root cells endodermis 140mM NaCl 1 hour -0.48 >More info -0.55 >More info root cells endodermis standard 1 hour root cells endodermis Original data
125 toc1-1-77hr -0.59 >More info -0.43 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
126 LTN008-2 aza-dc -0.61 >More info -0.41 >More info LTN012-2 Mock Original data
127 Sulfometuron EC50 -0.53 >More info -0.49 >More info Carrier Original data GEO bulk
128 FLIGHT TAGESB plate6 ROOTS -0.40 >More info -0.62 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
129 chito-octamer -0.59 >More info -0.42 >More info Col Mock Original data GEO bulk
130 smg7b-1 -0.55 >More info -0.46 >More info WT whole plant Original data GEO bulk
131 Bur-0-1h IAA -0.52 >More info -0.49 >More info Bur-0h IAA whole plant Original data GEO bulk
132 15m.KCl -0.59 >More info -0.42 >More info To. KCl 14 day old Roots Original data GEO bulk
133 plant (Col-0) 4h phytoprostane A1 -0.48 >More info -0.53 >More info plant (tga2-5-6) 4h control Original data GEO bulk
134 pericycle auxin -0.50 >More info -0.50 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
135 csn3-1 light -0.55 >More info -0.45 >More info WT light Original data GEO bulk
136 WT in -N -0.53 >More info -0.47 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
137 pepr1-1 Pepr2-3 +Pep2 2h 0.52 >More info 0.48 >More info WT +Pep2 2h Pep2 Original data GEO bulk
138 Triazolopyrimidine EC50 -0.56 >More info -0.44 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
139 embryo ABA -0.57 >More info -0.43 >More info embryo-control ABA embryo Original data GEO bulk
140 Col upon hypoxia 6 hrs -0.44 >More info -0.56 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
141 root longitudinal zone-4 pH 4.6 -0.38 >More info -0.62 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
142 chito-tetramer -0.59 >More info -0.40 >More info Col Mock Original data GEO bulk
143 sni1 -0.56 >More info -0.43 >More info WT Original data GEO bulk
144 Col-0 37C -0.43 >More info -0.56 >More info Col-0 22C Original data GEO bulk
145 AFB1 0h -0.48 >More info -0.51 >More info Col 0h Leaf Original data GEO bulk
146 gun1gun5 far-red pretreated 0.37 >More info 0.62 >More info WT far-red pretreated Original data GEO bulk
147 root longitudinal zone-4 NaCl -0.42 >More info -0.57 >More info root longitudinal zone-4 Original data GEO bulk
148 CMV-WT -0.53 >More info -0.45 >More info Mock-At Aerial tissues Original data GEO bulk
149 Bay-0-30min IAA -0.59 >More info -0.39 >More info Bay-0-0h IAA whole plant Original data GEO bulk
150 csn4-1 mutant -0.51 >More info -0.47 >More info WT dark Original data GEO bulk
151 toc1-1-53hr -0.50 >More info -0.48 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
152 ARR22-ox (t-zeatin 3 h) -0.55 >More info -0.43 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
153 roots IAA -0.36 >More info -0.62 >More info roots mock Original data GEO bulk
154 root cells endodermis 140mM NaCl 8 hours -0.45 >More info -0.53 >More info root cells endodermis standard 1 hour root cells endodermis Original data
155 afb3-1 2h KNO3 -0.50 >More info -0.47 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
156 SCR 72hr-S -0.50 >More info -0.47 >More info SCR 0hr endodermis Original data
157 Cor 10h -0.55 >More info -0.42 >More info Mock 10h Cor Original data GEO bulk
158 Osmotic Stress 24 h (root) -0.53 >More info -0.44 >More info Stress mock 24 h (root) Original data Stress treatments
159 root cells endodermis and quiescent center -Fe -0.44 >More info -0.53 >More info whole roots standard Original data GEO bulk
160 toc1-1-73hr -0.45 >More info -0.52 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
161 oligomycin 1 h -0.36 >More info -0.61 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
162 CeO2 germinant 0.37 >More info 0.60 >More info Millipore Water germinant CeO2 seedling Original data
163 NAA 3h -0.51 >More info -0.45 >More info before treatment NAA root Original data GEO bulk
164 toc1-1-69hr -0.51 >More info -0.45 >More info WT-untreated-69hr none seedlings aerial tissue Original data GEO bulk
165 Nicotinamide-65hr -0.55 >More info -0.41 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
166 WT 3h -P -0.42 >More info -0.54 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
167 root cells stele 140mM NaCl 3 hours -0.41 >More info -0.55 >More info root cells stele standard 1 hour root cells stele Original data
168 root cortex pH4.6 -0.55 >More info -0.40 >More info root cortex pH5.7 Original data GEO bulk
169 mkk1/mkk2 24h BTH rep -0.55 >More info -0.40 >More info Col-0 24h BTH rep Original data GEO bulk
170 IMI 4mM -0.55 >More info -0.39 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
171 35S::RSL4 0.40 >More info 0.54 >More info Col-0 Control root Original data GEO bulk
172 Whole root - S 3H -0.39 >More info -0.55 >More info Whole root - S 0H Original data GEO bulk
173 ani1 T16 0.59 >More info 0.35 >More info WT T16 root tissue Original data GEO bulk
174 roottip hypoxia total -0.27 >More info -0.66 >More info roottip control total Original data GEO bulk
175 1hr-pH4.5 -0.38 >More info -0.55 >More info 1hr-pH6 1hr pH 4.5 roots Original data GEO bulk
176 seedling 6h after HZE WT -0.59 >More info -0.34 >More info seedling day 1 unirradiated WT 6h Original data
177 upf3 -0.59 >More info -0.34 >More info WT whole plant Original data GEO bulk
178 SCR-GR Time 3H Dex -0.42 >More info -0.51 >More info SCR-GR Time 0H Dex Dex media for 3 hours Original data GEO bulk
179 root protoplasts 40 mM NaCl -0.41 >More info -0.52 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
180 3m.KCl -0.52 >More info -0.40 >More info To. KCl 14 day old Roots Original data GEO bulk
181 Cold Stress 24 h (root) -0.56 >More info -0.36 >More info Stress mock 24 h (root) Original data Stress treatments
182 GA 120min -0.28 >More info -0.64 >More info CON120 GA 120 min. root tips Original data GEO bulk
183 atmyc2 cop1 Seedling BL -0.40 >More info -0.52 >More info WT Seedling BL Original data GEO bulk
184 WT-Dry -0.39 >More info -0.53 >More info WT-CK dehydration treatment 1h Original data
185 ein5-1 ski2-3 -0.57 >More info -0.35 >More info Col-0 aerial tissue Original data
186 4d red light grown hmr-5 seedlings -0.59 >More info -0.33 >More info 4d red light grown WT(Col-0) seedlings Original data
187 sicy-192 gun1-101 cotyledons -0.57 >More info -0.35 >More info WT cotyledons cotyledons Original data
188 12m.KCl -0.41 >More info -0.51 >More info To. KCl 14 day old Roots Original data GEO bulk
189 (Ws-2)+100 uM As -0.41 >More info -0.51 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
190 35S:RPS4 eds1-2 24h 0.51 >More info 0.40 >More info 35S:RPS4 24h leaves Original data
191 WT AntimycinA 3h -0.54 >More info -0.37 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
192 HopZ1a treated -0.54 >More info -0.37 >More info col Original data GEO bulk
193 Leaf wounded -0.38 >More info -0.53 >More info Leaf control vegetative leaf Original data GEO bulk
194 GRX-overexpression seedlings MV 0.40 >More info 0.51 >More info WT seedlings MV Seedlings Original data GEO bulk
195 Col-0 V. longisporum-inoculated 48 hpi -0.39 >More info -0.52 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
196 Mutant siz1-3 (Drought) -0.50 >More info -0.41 >More info Col-0 (Drought) Original data GEO bulk
197 siz1-3 drought -0.50 >More info -0.41 >More info Col-0 drought Original data GEO bulk
198 root epidermis and lateral root cap 40 mM NaCl -0.41 >More info -0.50 >More info root epidermis and lateral root cap Original data GEO bulk
199 columella auxin -0.34 >More info -0.57 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
200 Mature callus -0.62 >More info -0.28 >More info Young callus hypocotyls Original data GEO bulk
201 anac017-2 AntimycinA 3h 0.53 >More info 0.37 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
202 S15-118 -0.40 >More info -0.50 >More info wt Original data GEO bulk
203 root cells endodermis 140mM NaCl 32 hours -0.40 >More info -0.50 >More info root cells endodermis standard 1 hour root cells endodermis Original data
204 col-5 DC3000 12h -0.55 >More info -0.34 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
205 seedling 3h after Gamma WT -0.34 >More info -0.55 >More info seedling day 1 unirradiated WT 3h Original data
206 upf1 -0.51 >More info -0.38 >More info WT whole plant Original data GEO bulk
207 root columella root cap 40 mM NaCl -0.51 >More info -0.38 >More info root columella root cap Original data GEO bulk
208 Mutant gh3.5-1D (AvrRpt2) -0.53 >More info -0.36 >More info Col-0 (AvrRpt2) Original data GEO bulk
209 ani1 T0.5 0.39 >More info 0.50 >More info WT T0.5 root tissue Original data GEO bulk
210 dark-hs -0.36 >More info -0.53 >More info dark-control seedling Original data
211 til1-1 22C -0.32 >More info -0.57 >More info Col-0 22C Original data GEO bulk
212 RRE2 Chitin -0.55 >More info -0.33 >More info Chitin Original data GEO bulk
213 mbd4 mutant thaliana 10-day-old seedling -0.51 >More info -0.37 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
214 toc1-1-61hr -0.50 >More info -0.38 >More info WT-untreated-61hr none seedlings aerial tissue Original data GEO bulk
215 line J2731-5 days control + 2 days salt s -0.37 >More info -0.51 >More info line J2731-7 days-control Original data
216 SCR-GR Time 12H Dex -0.53 >More info -0.34 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
217 COL-0-Fe--root -0.67 >More info -0.20 >More info COL-0-Ctrl--root root Original data
218 gai Control -0.54 >More info -0.33 >More info Laer Control leaf discs Original data GEO bulk
219 Nicotinamide-89hr -0.52 >More info -0.35 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
220 root cells epidermis 140mM NaCl 48 hours -0.36 >More info -0.51 >More info root cells epidermis standard 1 hour root cells epidermis Original data
221 root cells epidermis 140mM NaCl 3 hours -0.36 >More info -0.51 >More info root cells epidermis standard 1 hour root cells epidermis Original data
222 mbd6 mutant thaliana 10-day-old seedling -0.56 >More info -0.30 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
223 gul2-1 mutant -0.52 >More info -0.34 >More info WT 7 day-old whole seedlings Original data
224 root cells cortex 140mM NaCl 3 hours -0.33 >More info -0.53 >More info root cells cortex standard 1 hour root cells cortex Original data
225 CAX1/CAX3 mutant -0.51 >More info -0.35 >More info Col whole plant Original data GEO bulk
226 ataf1-1 mutant Col-0 Bgh inoculated -0.50 >More info -0.36 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
227 IAA 3 h -0.23 >More info -0.63 >More info Mock 3 h Original data Basic hormone treatment of seedlings
228 Protoplast Induced -0.28 >More info -0.58 >More info Uninduced Original data GEO bulk
229 Seedling-HeatStressed POLYSOMESmRNA -0.35 >More info -0.51 >More info Seedling-control POLYSOMESmRNA seedling Original data
230 aux1 mutant roots air 0.30 >More info 0.55 >More info roots IAA Original data GEO bulk
231 shoots bhlh100/101 0uM Fe -0.61 >More info -0.24 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
232 Root dark control 24h -0.50 >More info -0.35 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
233 bZIP1ko mutant N+Light- -0.50 >More info -0.35 >More info WT-sib N+Light- whole plant Original data GEO bulk
234 Seedling-HeatStressed TOTALmRNA -0.35 >More info -0.50 >More info Seedling-control TOTALmRNA seedling Original data
235 wrky33 Bc inoculation 14h -0.56 >More info -0.28 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
236 Col-0 ozone- (control genotype tga2 tag5 tga6) -0.51 >More info -0.33 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
237 efr-1 +elf18 10h 0.54 >More info 0.30 >More info WT +elf18 10h elf18 Original data GEO bulk
238 epidermis auxin -0.29 >More info -0.55 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
239 root - 08% oxygen - 2h -0.25 >More info -0.59 >More info root - 21% oxygen - 2h Original data GEO bulk
240 ice1 3H Cold -0.53 >More info -0.30 >More info WT 3H Cold Original data GEO bulk
241 35S:RPS4 eds1-2 2h 0.28 >More info 0.55 >More info 35S:RPS4 2h leaves Original data
242 root control pGL2 -0.31 >More info -0.51 >More info root control total control root Original data GEO bulk
243 ahg2-1sid2-2 -0.26 >More info -0.56 >More info WT (Col) control Original data GEO bulk
244 atgsnor1-1 0.31 >More info 0.51 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
245 gh3.5-1D 48 hpi -0.52 >More info -0.29 >More info Col-0 uninoculated Original data GEO bulk
246 C24 ozone -0.50 >More info -0.31 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
247 hni9 high nitrogen -0.30 >More info -0.51 >More info WT high nitrogen roots Original data GEO bulk
248 myb3 myb3r4d -0.27 >More info -0.54 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
249 long 17-degree- -0.21 >More info -0.60 >More info control long Original data GEO bulk
250 Dark 3day ivd -0.51 >More info -0.29 >More info 0h ivd Original data
251 sng1 -0.14 >More info -0.66 >More info WT aerial region Original data GEO bulk
252 rsa3-1 Na 24h -0.20 >More info -0.60 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
253 abi1 hypocotyl -0.25 >More info -0.55 >More info Ler hypocotyl hypocotyl Original data GEO bulk
254 CT101 ozone -0.50 >More info -0.29 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
255 RRE1 Chitin -0.59 >More info -0.20 >More info Chitin Original data GEO bulk
256 WT-NOCO2 INFECTED -0.50 >More info -0.29 >More info WT-MOCK Original data GEO bulk
257 ice1 control -0.61 >More info -0.17 >More info WT control Original data GEO bulk
258 sdg2 -0.52 >More info -0.26 >More info wt seedling Original data GEO bulk
259 cngc4 -0.52 >More info -0.26 >More info Ws-2 Seedlings Original data GEO bulk
260 npr1 sni1 brca2a SA 0.28 >More info 0.50 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
261 Transgenic LEC2GR Seedling 1h Dex -0.26 >More info -0.52 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
262 TAMM27 roots 2hr KNO3 nitrogen -0.26 >More info -0.52 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
263 pvip1 pvip2 -0.56 >More info -0.21 >More info Col-0 whole rosettes Original data GEO bulk
264 DUO1 induced 24h -0.27 >More info -0.50 >More info 24hr-not-induced whole plant Original data GEO bulk
265 root cells epidermis 140mM NaCl 8 hours -0.27 >More info -0.50 >More info root cells epidermis standard 1 hour root cells epidermis Original data
266 mtf1-1 0.22 >More info 0.55 >More info Col0 root Original data
267 P.syringae AvrRpt2 4 h (leaf) -0.50 >More info -0.26 >More info Mock 4 h (leaf) Original data Elicitor treatments
268 AvrRpt2 Col-0 6hpi -0.50 >More info -0.25 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
269 pad4-PsmES4326-24hpi 0.52 >More info 0.23 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
270 -Sulfate 24 h -0.17 >More info -0.57 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
271 bri1-116 0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
272 Col0 roots 2hr KNO3 nitrogen 0.17 >More info 0.56 >More info Col0 roots 2hr KCl control root Original data GEO bulk
273 4d red light grown hmr-22 seedlings -0.52 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
274 seed germinating in countinuous light 24h SL 0.06 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
275 QK HS -0.22 >More info -0.50 >More info QK control heat shocked seedling Original data GEO bulk
276 atmyc2 Seedling BL -0.21 >More info -0.51 >More info WT Seedling BL Original data GEO bulk
277 root - 08% oxygen - 30min -0.04 >More info -0.66 >More info root - 21% oxygen - 30min Original data GEO bulk
278 WT 3H Cold -0.16 >More info -0.54 >More info WT control Original data GEO bulk
279 IAA 8h -0.16 >More info -0.54 >More info control 8h root Original data GEO bulk
280 WT +Pep2 10h -0.52 >More info -0.18 >More info WT untreated Pep2 Original data GEO bulk
281 root - 04% oxygen - 2h -0.10 >More info -0.60 >More info root - 21% oxygen - 2h Original data GEO bulk
282 ckh2 CK25 -0.20 >More info -0.50 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
283 Ws HS -0.12 >More info -0.57 >More info Ws control heat shocked seedling Original data GEO bulk
284 CLO 4mM -0.50 >More info -0.18 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
285 msh1 albino -0.50 >More info -0.18 >More info WT aerial part Original data GEO bulk
286 WT Root Hypoxia -0.18 >More info -0.50 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
287 WT +elf18 10h -0.53 >More info -0.13 >More info WT untreated elf18 Original data GEO bulk
288 DC3000 24h -0.52 >More info -0.14 >More info Mock 24h DC3000 Original data GEO bulk
289 Shoot apex inflorescence (after bolting) 0.01 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
290 desiccated mature pollen grains 0.12 >More info 0.54 >More info hydrated pollen grains Original data GEO bulk
291 IAA7mII over-expressor IAA Treated -0.03 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
292 Col PSTDC3000 24h -0.52 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
293 ice1 6H Cold -0.53 >More info -0.12 >More info WT 6H Cold Original data GEO bulk
294 Root P recovery -0.50 >More info -0.15 >More info Root -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
295 Red/FR Light45min 0.05 >More info -0.67 >More info FarRed Light 45min Original data Light treatments
296 ms35 silique stage 7 -0.03 >More info -0.58 >More info Ler 6.7 anther and filament Original data GEO bulk
297 Aerobic e1 ate2 -0.08 >More info -0.52 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
298 GA3 0.5 h (ga1) 0.08 >More info 0.50 >More info Mock 0.5 h (ga1) Original data Basic hormone treatment of seedlings
299 Col-0 24hpi A. brassicicola -0.59 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
300 Col-0 HS 0.01 >More info -0.58 >More info Col-0 control heat shocked seedling Original data GEO bulk
301 WT (Col-0) heat shock 0.01 >More info -0.58 >More info WT (Col-0) whole seedling Original data GEO bulk
302 root - 01% oxygen - 2h 0.05 >More info -0.60 >More info root - 21% oxygen - 2h Original data GEO bulk
303 root - 01% oxygen - 30min 0.02 >More info -0.56 >More info root - 21% oxygen - 30min Original data GEO bulk
304 WT roots - Fe -0.60 >More info 0.07 >More info WT roots + Fe Roots Original data GEO bulk
305 Laer pretreat GA Flg22 1h -0.18 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
306 Heat shock optimum -0.12 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
307 Dry pre-dawn 0.04 >More info -0.56 >More info Wet pre-dawn water-limited whole rosette Original data GEO bulk
308 root - 04% oxygen - 30min 0.04 >More info -0.55 >More info root - 21% oxygen - 30min Original data GEO bulk
309 cpctry -0.01 >More info -0.50 >More info Col Original data GEO bulk
310 CCA1-ox 6am non-polysomal -0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
311 FarRed Light 45min -0.02 >More info 0.51 >More info White Light 45min Original data Light treatments
312 non-polysome mRNA eif3k -0.03 >More info 0.50 >More info non-polysome mRNA WT aerial part Original data GEO bulk
313 Col BTH -0.37 >More info 0.67 >More info Col rosettes Original data GEO bulk
314 siliques AtHb1 control -0.34 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
315 WT +Pep2 2h -0.51 >More info 0.35 >More info WT untreated Pep2 Original data GEO bulk
316 Light 3day hml 0.35 >More info -0.51 >More info 0h hml Original data
317 Leafminer damaged seedlings -0.40 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
318 Col0-PsmES4326-24hpi -0.54 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk