4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 4C 1h
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List of experiments correlated with "4C 1h"  Help Download transcriptome of top 30
Score Experiment Correlation from
4C 1h		 Correlation to
4C 1h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 4C 1h 1.00 >More info 1.00 >More info 4C 0h Original data GEO bulk
2 4C 2h(SOIL) 0.84 >More info 0.90 >More info 4C 0h(SOIL) Original data GEO bulk
3 WT 3H Cold 0.82 >More info 0.67 >More info WT control Original data GEO bulk
4 HARAP aerobic -0.79 >More info -0.67 >More info WT aerobic aerobic Original data GEO bulk
5 WT 6H Cold 0.78 >More info 0.66 >More info WT control Original data GEO bulk
6 myb61 xylem 0.63 >More info 0.75 >More info wt xylem xylem Original data GEO bulk
7 3x(m) 0.62 >More info 0.76 >More info 2x two week old seedlings Original data
8 flu dark 8hours/30 minute light 0.71 >More info 0.67 >More info col dark 8hours/30 minute light Original data GEO bulk
9 triploid female excess -0.69 >More info -0.69 >More info tetraploid Original data GEO bulk
10 WT-Dry 0.81 >More info 0.54 >More info WT-CK dehydration treatment 1h Original data
11 TNT-seedlings 0.62 >More info 0.68 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
12 dorn1-1 Root 100 mM ATP 30 min -0.72 >More info -0.58 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
13 M6PR transgenic leaf 0mM NaCl 0.71 >More info 0.59 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
14 mutant acs6E (single mutant) -0.81 >More info -0.48 >More info col control (single mutant) Original data GEO bulk
15 ex2 flu dark 8hours/30 minute light 0.71 >More info 0.56 >More info col dark 8hours/30 minute light Original data GEO bulk
16 2hr transitory KNO3 PrR cell 0.60 >More info 0.65 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
17 toc1-1-57hr 0.62 >More info 0.63 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
18 Cycloheximide 3 h 0.71 >More info 0.53 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
19 ex1 flu dark 8hours/30 minute light 0.74 >More info 0.49 >More info col dark 8hours/30 minute light Original data GEO bulk
20 myb61 cork 0.64 >More info 0.59 >More info wt cork cork Original data GEO bulk
21 35S:RPS4 eds1-2 2h -0.67 >More info -0.55 >More info 35S:RPS4 2h leaves Original data
22 root cells endodermis and quiescent center -Fe 0.68 >More info 0.54 >More info whole roots standard Original data GEO bulk
23 9 hr Hypoxia 1 hr recovery Total RNA 0.76 >More info 0.46 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
24 toc1-1-85hr 0.52 >More info 0.70 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
25 Col-0 Root 100 mM ATP 30 min 0.75 >More info 0.46 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
26 toc1-1-49hr 0.62 >More info 0.59 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
27 mutant acs2B (single mutant) -0.81 >More info -0.39 >More info col control (single mutant) Original data GEO bulk
28 Chitosan 3h Treatment 0.68 >More info 0.52 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
29 Whole root - low pH 1H 0.63 >More info 0.57 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
30 3x(p) 0.63 >More info 0.56 >More info 2x two week old seedlings Original data
31 AgNO3 3 h 0.60 >More info 0.59 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
32 Leafminer damaged seedlings 0.62 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
33 ORS1 induced 0.77 >More info 0.41 >More info mock-induced rosette leaves Original data GEO bulk
34 2hr transitory KNO3 SR cell 0.74 >More info 0.44 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
35 FarRed Light 45min 0.42 >More info 0.75 >More info White Light 45min Original data Light treatments
36 toc1-1-73hr 0.45 >More info 0.72 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
37 root cells stele -Fe 0.70 >More info 0.46 >More info whole roots standard Original data GEO bulk
38 wnk8-2 untreated -0.73 >More info -0.42 >More info Col-0 untreated seedlings Original data GEO bulk
39 4C 7d 0.67 >More info 0.47 >More info 4C 0h Original data GEO bulk
40 Col(gl) 0mM NaCl 0.66 >More info 0.48 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
41 Selenate (root) 0.67 >More info 0.47 >More info Ws (root) Original data GEO bulk
42 Root Selenate 0.67 >More info 0.47 >More info Root control 40 micromolar selenate Root Original data GEO bulk
43 abi1 hypocotyl 0.59 >More info 0.55 >More info Ler hypocotyl hypocotyl Original data GEO bulk
44 Col(gl) leaf 0mM NaCl 0.66 >More info 0.48 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
45 FLIGHT TAGESB plate6 ROOTS 0.61 >More info 0.53 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
46 1h +Pi -0.58 >More info -0.56 >More info 1h -Pi root Original data GEO bulk
47 5-Triiodobenzoic acid3 h 0.68 >More info 0.46 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
48 inhibitor B Treated 0.58 >More info 0.56 >More info Negative Control Original data GEO bulk
49 Leaf wounded 0.68 >More info 0.46 >More info Leaf control vegetative leaf Original data GEO bulk
50 Col leaf 100mM NaCl 0.69 >More info 0.45 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
51 Col leaf 100mM NaCl 0.69 >More info 0.45 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
52 Col 100mM NaCl 0.69 >More info 0.45 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
53 root cells columella root cap -Fe 0.68 >More info 0.45 >More info whole roots standard Original data GEO bulk
54 whole roots 140 mM NaCl 30 minutes 0.78 >More info 0.35 >More info whole roots standard Original data GEO bulk
55 mutant acs4A (single mutant) -0.86 >More info -0.27 >More info col control (single mutant) Original data GEO bulk
56 Leafminer systemically damaged thaliana seedlings 0.76 >More info 0.37 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
57 Cold Stress 24 h (root) 0.66 >More info 0.47 >More info Stress mock 24 h (root) Original data Stress treatments
58 OsSAP11 expressing -0.59 >More info -0.53 >More info WT seedlings Original data GEO bulk
59 Protoplast Induced 0.63 >More info 0.49 >More info Uninduced Original data GEO bulk
60 wrky72-1-MOCK 0.68 >More info 0.43 >More info WT-MOCK Original data GEO bulk
61 npr1 sni1 ssn2 SA -0.70 >More info -0.41 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
62 bHLH122 ox -0.62 >More info -0.49 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
63 wnk8-1 untreated -0.71 >More info -0.40 >More info Col-0 untreated seedlings Original data GEO bulk
64 M6PR transgenic 0mM NaCl 0.60 >More info 0.50 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
65 aba1 hypocotyl 0.70 >More info 0.40 >More info Ler hypocotyl hypocotyl Original data GEO bulk
66 Whole root - low pH 12H 0.54 >More info 0.56 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
67 Atss3 Dark4 -0.68 >More info -0.42 >More info Atss3 Dark0.5 Original data GEO bulk
68 oligomycin 1 h 0.57 >More info 0.53 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
69 toc1-1-53hr 0.42 >More info 0.67 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
70 ask1 mutant flower buds 0.57 >More info 0.52 >More info Ler WT flower buds unopened flower buds Original data GEO bulk
71 wrky72-2-MOCK 0.70 >More info 0.38 >More info WT-MOCK Original data GEO bulk
72 whole roots 140 mM NaCl 1 hour 0.77 >More info 0.31 >More info whole roots standard Original data GEO bulk
73 CDB1-Knockout -0.63 >More info -0.45 >More info WT Original data GEO bulk
74 BLM+INA 0.57 >More info 0.51 >More info CK BLM and INA seedling Original data
75 vtc2 mature somatic embryo 0.70 >More info 0.38 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
76 WT cold 12 h 0.73 >More info 0.35 >More info WT cold 0h GSM955987 seedlings Original data GEO bulk
77 Apex mir-3TCP 14DAS -0.59 >More info -0.49 >More info Apex Col 14DAS Original data GEO bulk
78 Mutant axr3-1 (IAA) 0.61 >More info 0.46 >More info Col (IAA) Original data GEO bulk
79 Kas -Fe 24h Roots -0.61 >More info -0.46 >More info Kas +Fe 24h Roots Original data GEO bulk
80 WT+H2O2 0.67 >More info 0.40 >More info WT H2O2 Original data GEO bulk
81 hira-root -0.63 >More info -0.44 >More info WT-root root Original data
82 SCL3 OE -0.65 >More info -0.42 >More info Col-0 whole root Original data GEO bulk
83 OsRLCK253 expressing -0.61 >More info -0.46 >More info WT seedlings Original data GEO bulk
84 root Dosed gold 0.56 >More info 0.51 >More info root No gold .125 mM gold 24 h roots Original data
85 Kas-1 -Fe 24h -0.61 >More info -0.46 >More info Kas-1 +Fe 24h roots Original data GEO bulk
86 0.125 mM gold 24 h 0.56 >More info 0.51 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
87 WT (Col-0) inflorescence drought day 4 0.62 >More info 0.45 >More info WT (Col-0) inflorescence well-watered day 4 Unopen flower buds Original data GEO bulk
88 irradiated leaf (cmt 5d) 0.59 >More info 0.48 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
89 npr1 sni1 SA 0.71 >More info 0.36 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
90 tetraploid 0.49 >More info 0.58 >More info diploid Original data GEO bulk
91 ex1ex2flu dark 8hours/30 minute light 0.74 >More info 0.32 >More info col dark 8hours/30 minute light Original data GEO bulk
92 root hypoxia pPEP 0.71 >More info 0.35 >More info root hypoxia total hypoxia root Original data GEO bulk
93 IAA/inhibitor B Treated 0.55 >More info 0.51 >More info IAA Treated Original data GEO bulk
94 root cells -Fe 0.60 >More info 0.46 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
95 toc1-1-65hr 0.61 >More info 0.44 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
96 toc1-1-77hr 0.56 >More info 0.49 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
97 A. thaliana-A. lyrata hybrid -0.61 >More info -0.44 >More info A. thaliana mature leaves before flowering Original data GEO bulk
98 Red/FR Light45min -0.34 >More info -0.71 >More info FarRed Light 45min Original data Light treatments
99 coi1-2 0.59 >More info 0.45 >More info Col-0 mock Whole seedling Original data GEO bulk
100 2hr KCl control SR cell 0.71 >More info 0.33 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
101 GRX-overexpression seedlings MV -0.56 >More info -0.48 >More info WT seedlings MV Seedlings Original data GEO bulk
102 irradiated leaf (WT 5d) 0.68 >More info 0.36 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
103 Homozygous-AtcesA4 -0.62 >More info -0.42 >More info Heterozygous-AtcesA4 rosette Original data GEO bulk
104 WT+chitooctaose 0.65 >More info 0.39 >More info WT+water chitooctaose seedlings Original data GEO bulk
105 phr1 Shoot-Pi 0.40 >More info 0.64 >More info WT Root-Pi shoots Original data GEO bulk
106 CBF3 0mM NaCl 0.56 >More info 0.47 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
107 Constans-mutant -0.52 >More info -0.51 >More info Col control above-ground whole plant Original data GEO bulk
108 P.p 2.5hai 0.63 >More info 0.40 >More info At-Control roots Original data GEO bulk
109 12m.KCl 0.59 >More info 0.44 >More info To. KCl 14 day old Roots Original data GEO bulk
110 npr1 sni1 brca2a SA -0.55 >More info -0.48 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
111 Total RNA csp1 cold 0.56 >More info 0.46 >More info Total RNA csp1 12h cold (4C) rosettes Original data GEO bulk
112 wavy 0.50 >More info 0.52 >More info WT Original data GEO bulk
113 ein5-1 ski2-3 0.69 >More info 0.33 >More info Col-0 aerial tissue Original data
114 GA 0.62 >More info 0.40 >More info none GA Rosette Original data GEO bulk
115 rdr6-11 ein5-1 ski2-3 0.62 >More info 0.40 >More info Col-0 aerial tissue Original data
116 35S::MBF1c 0.51 >More info 0.50 >More info control Original data GEO bulk
117 Leaf systemic 0.69 >More info 0.32 >More info Leaf control vegetative leaf Original data GEO bulk
118 amiRAP aerobic -0.68 >More info -0.33 >More info WT aerobic aerobic Original data GEO bulk
119 seedlings + TSA 0.69 >More info 0.32 >More info control seedlings 10-day old whole seedling Original data GEO bulk
120 12m.KNO3 0.49 >More info 0.52 >More info To. KNO3 14 day old Roots Original data GEO bulk
121 1 h Light Total RNA -0.40 >More info -0.61 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
122 vte1-1 3d vernalization -0.55 >More info -0.45 >More info WT 3d vernalization Original data GEO bulk
123 root protoplasts 40 mM NaCl 0.58 >More info 0.42 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
124 AtLysM RLK1 mutant chitooctaose -0.67 >More info -0.33 >More info WT chitooctaose Original data GEO bulk
125 abh1 +ABA -0.59 >More info -0.41 >More info Col-0 +ABA Original data GEO bulk
126 Shoot apex inflorescence (after bolting) 0.35 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
127 Phytoprostane A1 4 h 0.53 >More info 0.46 >More info Col-0 Original data GEO bulk
128 24h volatiles Sp. HRO-C48 0.61 >More info 0.38 >More info 24h untreated whole seedling Original data GEO bulk
129 petiole in FRD 0.59 >More info 0.40 >More info petiole in WL petioles Original data GEO bulk
130 shoot-10 μM DEX- 12 hr 0.51 >More info 0.48 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
131 CMV-A2b mutant 0.64 >More info 0.35 >More info Mock-At Aerial tissues Original data GEO bulk
132 2hr continuous KNO3 SR cell 0.70 >More info 0.29 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
133 HARAP hypoxic 0.57 >More info 0.42 >More info hypoxic hypoxia Original data GEO bulk
134 WT chitooctaose 0.65 >More info 0.34 >More info WT water Original data GEO bulk
135 pip3 At2g19270 TDNA 9 0.46 >More info 0.53 >More info Col-0 whole plant Original data GEO bulk
136 low CO2 + light 0.48 >More info 0.51 >More info normal CO2 + light Original data GEO bulk
137 Col ozone 3h 0.48 >More info 0.51 >More info Col clean-air 3h ozone Original data GEO bulk
138 axr1 hypocotyl 0.58 >More info 0.40 >More info wt hypocotyl hypocotyl Original data GEO bulk
139 WT Na2S -0.67 >More info -0.31 >More info WT water Na2S leaf Original data GEO bulk
140 phr1 Root-Pi 0.69 >More info 0.29 >More info WT Root+Pi roots Original data GEO bulk
141 Heat 6h -0.69 >More info -0.29 >More info At mock rosettes - 5 leaves stage Original data
142 C24-1h IAA 0.53 >More info 0.45 >More info C24-0h IAA whole plant Original data GEO bulk
143 WT cold 0.69 >More info 0.29 >More info WT warm 3 week cold entire aerial part Original data GEO bulk
144 lug3 flowers 0.73 >More info 0.25 >More info WT-flowers flowers Original data GEO bulk
145 9 hr Hypoxia Total RNA 0.62 >More info 0.36 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
146 CeO2 germinant -0.50 >More info -0.48 >More info Millipore Water germinant CeO2 seedling Original data
147 9 hr Hypoxia 1 hr recovery IP RNA 0.71 >More info 0.27 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
148 GST 4 h (leaf) 0.60 >More info 0.38 >More info Mock 4 h (leaf) Original data Elicitor treatments
149 seedling 24h after HZE atm-1 0.63 >More info 0.34 >More info seedling day 2 unirradiated atm-1 24h Original data
150 Ws 100mM NaCl 0.61 >More info 0.36 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
151 pXVE:HA-EDM2-a untreated -0.72 >More info -0.25 >More info Col-0 untreated seedlings Original data GEO bulk
152 Ws leaf 100mM NaCl 0.61 >More info 0.36 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
153 1.5 hr ammonium 0.57 >More info 0.40 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
154 Differentiation 24h -0.66 >More info -0.31 >More info Differentiation 0h leaves Original data
155 Salt Stress 24 h (root) 0.68 >More info 0.29 >More info Stress mock 24 h (root) Original data Stress treatments
156 SA 4mM 0.65 >More info 0.32 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
157 Nicotinamide-57hr 0.61 >More info 0.36 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
158 Col-0 shade 0.47 >More info 0.50 >More info Col-0 light seedlings Original data GEO bulk
159 IAA 0.5 h 0.40 >More info 0.56 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
160 seedlings +5AC 0.58 >More info 0.38 >More info control seedlings 10-day old whole seedling Original data GEO bulk
161 35S::LFY 0.54 >More info 0.42 >More info Landsberg erecta seedlings Original data GEO bulk
162 35S::RSL4 -0.51 >More info -0.45 >More info Col-0 Control root Original data GEO bulk
163 root - 08% oxygen - 48h -0.50 >More info -0.46 >More info root - 21% oxygen - 48h Original data GEO bulk
164 Heat 6h-recover 48h 0.71 >More info 0.25 >More info Heat 6h rosettes - 5 leaves stage Original data
165 Whole root - low pH 30min 0.57 >More info 0.39 >More info Whole root - Std pH 30min pH 4.6 for 30 min Original data GEO bulk
166 R. solani AG8 0.42 >More info 0.54 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
167 SOS1 0mM NaCl 0.55 >More info 0.40 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
168 chito-tetramer 0.57 >More info 0.38 >More info Col Mock Original data GEO bulk
169 dcl2-1 -0.82 >More info -0.13 >More info Col-0 Original data GEO bulk
170 shoot-10 μM DEX- 6 hr 0.54 >More info 0.41 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
171 WT 24H Cold 0.64 >More info 0.31 >More info WT control Original data GEO bulk
172 Nicotinamide-65hr 0.54 >More info 0.41 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
173 GR-REV 60min 0.54 >More info 0.41 >More info Col 60min Original data GEO bulk
174 Col-0 RNAi-MBS2/mbs1-1 HL 3h -0.54 >More info -0.40 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
175 Nicotinamide-85hr 0.54 >More info 0.40 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
176 Cotyledons 0.78 >More info 0.16 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
177 15m.KCl 0.54 >More info 0.40 >More info To. KCl 14 day old Roots Original data GEO bulk
178 seed germinating in countinuous light 24h SL 0.27 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
179 max4 hypocotyl 0.60 >More info 0.34 >More info wt hypocotyl hypocotyl Original data GEO bulk
180 Mutant arf19-1 (IAA) -0.60 >More info -0.34 >More info Col (IAA) Original data GEO bulk
181 opr3 OPDA 0.5 h 0.52 >More info 0.42 >More info opr3 0 h Original data GEO bulk
182 P.p 30hai 0.59 >More info 0.35 >More info At-Control roots Original data GEO bulk
183 AtGATA2ox 0.60 >More info 0.34 >More info Col seedling Original data GEO bulk
184 GiantCell Root -0.70 >More info -0.24 >More info Control Root laser captured giant cells Original data GEO bulk
185 cys-c1 root -0.66 >More info -0.27 >More info Root-WT roots Original data GEO bulk
186 BLM 0.53 >More info 0.40 >More info CK BLM seedling Original data
187 root cells cortex -Fe 0.67 >More info 0.26 >More info whole roots standard Original data GEO bulk
188 Distal half (leaf7) 0.76 >More info 0.17 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
189 AtMinD1 Prolonged-induction 0.54 >More info 0.39 >More info Control whole plant Original data GEO bulk
190 hypoxic -0.53 >More info -0.40 >More info WT aerobic hypoxia Original data GEO bulk
191 Rosette leaf No2 0.76 >More info 0.17 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
192 9m.KCl 0.56 >More info 0.37 >More info To. KCl 14 day old Roots Original data GEO bulk
193 Differentiation 48h -0.68 >More info -0.25 >More info Differentiation 0h leaves Original data
194 1 h Light IP RNA -0.40 >More info -0.53 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
195 shoot-10 μM DEX- 24hr 0.50 >More info 0.43 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
196 15m.KNO3 0.51 >More info 0.42 >More info To. KNO3 14 day old Roots Original data GEO bulk
197 root cells epidermis and lateral root cap -Fe 0.51 >More info 0.42 >More info whole roots standard Original data GEO bulk
198 IAA/inhibitor A Treated 0.65 >More info 0.27 >More info IAA Treated Original data GEO bulk
199 siliques AtHb1 control 0.40 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
200 oligomycin 4 h 0.57 >More info 0.35 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
201 2hr continuous KNO3 PrR cell 0.59 >More info 0.33 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
202 dcl1-7 0.57 >More info 0.35 >More info Ler Original data GEO bulk
203 toc1-1-81hr 0.35 >More info 0.57 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
204 protoplasts T1 [flg22] 0.54 >More info 0.37 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
205 anti-sense for AtAOX1a 0.66 >More info 0.25 >More info WT Original data GEO bulk
206 ckh1 CK25 0.67 >More info 0.24 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
207 Whole root - low pH 3H 0.26 >More info 0.65 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
208 4C 1h 0.58 >More info 0.33 >More info 22C 1h Original data GEO bulk
209 Differentiation 36h -0.69 >More info -0.22 >More info Differentiation 0h leaves Original data
210 pepr1-1 Pepr2-3 +Pep2 2h -0.58 >More info -0.33 >More info WT +Pep2 2h Pep2 Original data GEO bulk
211 root - 04% oxygen - 48h -0.50 >More info -0.41 >More info root - 21% oxygen - 48h Original data GEO bulk
212 Bur-0-1h IAA 0.59 >More info 0.32 >More info Bur-0h IAA whole plant Original data GEO bulk
213 SAM SE agl15 agl18 double mutant 0.55 >More info 0.35 >More info SAM SE Col Original data GEO bulk
214 Infected pft1 leaf 0.52 >More info 0.38 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
215 TA induced 0.62 >More info 0.28 >More info Methanol TA Suspension cells Original data GEO bulk
216 dcl3-1 -0.80 >More info -0.10 >More info Col-0 Original data GEO bulk
217 WT cold 24h 0.58 >More info 0.32 >More info WT cold 0h cold at 4°C seedlings Original data GEO bulk
218 Roots Cd -0.70 >More info -0.20 >More info Roots control Cd Root Original data GEO bulk
219 ckh1 CK200 0.71 >More info 0.19 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
220 MIL4 ox BTH -0.70 >More info -0.20 >More info Col BTH Original data GEO bulk
221 Kas2 roots 2hr KNO3 nitrogen 0.55 >More info 0.34 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
222 1hr-pH4.5 0.56 >More info 0.33 >More info 1hr-pH6 1hr pH 4.5 roots Original data GEO bulk
223 chito-octamer 0.54 >More info 0.35 >More info Col Mock Original data GEO bulk
224 Proximalhalf (leaf7) 0.74 >More info 0.15 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
225 Differentiation 12h -0.63 >More info -0.26 >More info Differentiation 0h leaves Original data
226 OXUPB1-2 meristematic zone 0.52 >More info 0.37 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
227 Cold Stress 24 h (shoot) 0.63 >More info 0.26 >More info Stress mock 24 h (shoot) Original data Stress treatments
228 cs26 long day 0.72 >More info 0.17 >More info Leaves-WT-LD leaf Original data GEO bulk
229 toc1-1-61hr 0.50 >More info 0.39 >More info WT-untreated-61hr none seedlings aerial tissue Original data GEO bulk
230 leaf blade in FRD 0.53 >More info 0.36 >More info leaf blade in WL leaf blades Original data GEO bulk
231 Mutant iaa5_6_19 -0.53 >More info -0.36 >More info Col Original data GEO bulk
232 Heat shock optimum 0.24 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
233 Kas-1 -Fe 48h -0.60 >More info -0.29 >More info Kas-1 +Fe 24h roots Original data GEO bulk
234 Kas -Fe 48h Roots -0.60 >More info -0.29 >More info Kas +Fe 24h Roots Original data GEO bulk
235 anac017-2 AntimycinA 3h -0.60 >More info -0.29 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
236 rosette Light Wounded 0.71 >More info 0.18 >More info rosette Light Control Original data GEO bulk
237 tunicamycin -0.51 >More info -0.37 >More info DMF Original data GEO bulk
238 ABA JA 24h -0.61 >More info -0.27 >More info EtOH 24h 24hr Original data GEO bulk
239 Ts5 roots 2hr KCl control 0.60 >More info 0.28 >More info Col0 roots 2hr KCl control root Original data GEO bulk
240 Col0-PsmES4326-24hpi 0.27 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
241 bri1-116 0.15 >More info 0.73 >More info Col seedling Original data GEO bulk
242 Homozygous-AtcesA6 -0.57 >More info -0.31 >More info Heterozygous-AtcesA6 rosette Original data GEO bulk
243 sid2-1 cold -0.57 >More info -0.31 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
244 mtf1-1 -0.54 >More info -0.33 >More info Col0 root Original data
245 IXB induced 0.51 >More info 0.36 >More info Methanol IXB Suspension cells Original data GEO bulk
246 K starvation (root) 0.57 >More info 0.30 >More info Ws (root) Original data GEO bulk
247 bbx24 in Simulated Shade -0.54 >More info -0.32 >More info WT in simulated shade shade seedling Original data
248 seedlings protease IV 0.54 >More info 0.32 >More info seedlings nontreated control whole seedling Original data
249 light-hs -0.52 >More info -0.34 >More info light-control seedling Original data
250 Leafminer locally damaged thaliana seedlings 0.62 >More info 0.24 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
251 9m.KNO3 0.58 >More info 0.28 >More info To. KNO3 14 day old Roots Original data GEO bulk
252 Nuclear GSH1 0.59 >More info 0.27 >More info Cytoplasmic GSH1 Control Original data GEO bulk
253 pmr5 0.51 >More info 0.35 >More info Col-0 Original data GEO bulk
254 psad1 0.67 >More info 0.18 >More info WS rosette leaves Original data GEO bulk
255 seedling 6h after HZE WT 0.53 >More info 0.32 >More info seedling day 1 unirradiated WT 6h Original data
256 IRP1-OE-Ctrl--root 0.66 >More info 0.19 >More info COL-0-Ctrl--root root Original data
257 SA 0.29 >More info 0.56 >More info WT mock Whole seedling Original data GEO bulk
258 CAX1/CAX3 mutant 0.59 >More info 0.26 >More info Col whole plant Original data GEO bulk
259 Root -K 0.57 >More info 0.28 >More info Control-root Original data GEO bulk
260 rosette leaves lcr 0.70 >More info 0.15 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
261 WT 3h -P 0.51 >More info 0.33 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
262 MYB51 OE -0.68 >More info -0.16 >More info WT for ATR1/MYB51 Original data GEO bulk
263 C58 3hpi 0.50 >More info 0.34 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
264 Nicotinamide-73hr 0.50 >More info 0.34 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
265 bak1-3 untreated -0.63 >More info -0.21 >More info WT untreated untreated Original data GEO bulk
266 9 hr Hypoxia IP RNA 0.61 >More info 0.23 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
267 mutant acs2C (single mutant) -0.75 >More info -0.09 >More info col control (single mutant) Original data GEO bulk
268 wnk8-3 untreated -0.57 >More info -0.27 >More info Col-0 untreated seedlings Original data GEO bulk
269 Expanding leaf 0.71 >More info 0.13 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
270 WT AntimycinA 3h 0.61 >More info 0.23 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
271 ckh1 CK0 0.50 >More info 0.33 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
272 P.p 10.5hai 0.54 >More info 0.29 >More info At-Control roots Original data GEO bulk
273 pmr5 pmr6 0.51 >More info 0.32 >More info Col-0 Original data GEO bulk
274 root epidermis and lateral root cap 40 mM NaCl 0.54 >More info 0.29 >More info root epidermis and lateral root cap Original data GEO bulk
275 6h volatiles Sp. HRO-C48 0.62 >More info 0.21 >More info 6h untreated whole seedling Original data GEO bulk
276 mil4 sid2 -0.69 >More info -0.14 >More info Col rosettes Original data GEO bulk
277 seedling 12h after HZE WT 0.61 >More info 0.22 >More info seedling day 1 unirradiated WT 12h Original data
278 Rsch 8h 0.61 >More info 0.22 >More info Rsch CA Leaves Original data
279 nar1-4/- 0.58 >More info 0.25 >More info WT whole seedling Original data GEO bulk
280 inhibitor A Treated 0.62 >More info 0.21 >More info Negative Control Original data GEO bulk
281 rao2 H2O2 3h -0.70 >More info -0.13 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
282 mutant acs5D (single mutant) -0.69 >More info -0.14 >More info col control (single mutant) Original data GEO bulk
283 hst5 0.56 >More info 0.26 >More info Col-0 Original data GEO bulk
284 Te 8h 0.55 >More info 0.27 >More info Te CA Leaves Original data
285 Mutant lwd1_lwd2 0.64 >More info 0.18 >More info Wildtype for phy mutants Original data GEO bulk
286 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 0.64 >More info 0.18 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
287 OXUPB1-2 elongation zone 0.52 >More info 0.30 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
288 Lipopolysaccaride4 h (leaf) 0.66 >More info 0.16 >More info Mock 4 h (leaf) Original data Elicitor treatments
289 cpctry 0.30 >More info 0.52 >More info Col Original data GEO bulk
290 T6 leaf-drought -0.64 >More info -0.17 >More info T6 leaf-well watered Original data GEO bulk
291 whole roots 140 mM NaCl 4 hour 0.54 >More info 0.27 >More info whole roots standard Original data GEO bulk
292 rdr1-1 -0.74 >More info -0.07 >More info Col-0 Original data GEO bulk
293 2 hr Hypoxia Total RNA 0.54 >More info 0.27 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
294 abi4-102 (II) 0.61 >More info 0.20 >More info Col (II) rosette Original data GEO bulk
295 MIL4 ox -0.64 >More info -0.17 >More info Col Original data GEO bulk
296 AtHB8 0.68 >More info 0.13 >More info Control for tissue data shoot apical meristem Original data GEO bulk
297 Bur-0-30min IAA 0.62 >More info 0.19 >More info Bur-0h IAA whole plant Original data GEO bulk
298 NFA8 roots 2hr KCl control 0.50 >More info 0.31 >More info Col0 roots 2hr KCl control root Original data GEO bulk
299 WT seedlings MV 0.71 >More info 0.10 >More info WT seedlings control Seedlings Original data GEO bulk
300 sid2-avrB-6h 0.58 >More info 0.23 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
301 +1.6 mM Tween 20 1 h. 0.57 >More info 0.24 >More info +distilled water 1 h. Original data GEO bulk
302 shoots bhlh100/101 100uM Fe 0.60 >More info 0.21 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
303 04h Col-0 -0.63 >More info -0.17 >More info 00h Col-0 Original data GEO bulk
304 Petiol (leaf7) 0.68 >More info 0.12 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
305 rdr2-1 -0.78 >More info -0.02 >More info Col-0 Original data GEO bulk
306 FLIGHT TAGES 2B plate6 HYPOCOTYLS 0.66 >More info 0.14 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
307 2 hr Hypoxia IP RNA 0.57 >More info 0.23 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
308 Transgenic LEC2GR Seedling 1h Dex 0.58 >More info 0.22 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
309 CMP 4hr 0.58 >More info 0.22 >More info Acetone 4hr root Original data GEO bulk
310 WT-NOCO2 INFECTED 0.59 >More info 0.21 >More info WT-MOCK Original data GEO bulk
311 12h Col-0 -0.54 >More info -0.25 >More info 00h Col-0 Original data GEO bulk
312 Col-0 2HS 0.60 >More info 0.18 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
313 oas-a1.1 Cd 24h 0.66 >More info 0.12 >More info Cd 24h root Shoot Original data GEO bulk
314 Nicotinamide-89hr 0.56 >More info 0.22 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
315 WT Nitrate 0.5h 0.55 >More info 0.23 >More info WT untreated Original data GEO bulk
316 LTN008-2 aza-dc 0.59 >More info 0.19 >More info LTN012-2 Mock Original data
317 whole roots 140 mM NaCl 16 hour 0.51 >More info 0.27 >More info whole roots standard Original data GEO bulk
318 noa1-2 0.52 >More info 0.26 >More info Col-0 whole seedlings Original data GEO bulk
319 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.56 >More info -0.22 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
320 phr1 phl1 Root-Pi -0.22 >More info -0.56 >More info WT Shoot+Pi roots Original data GEO bulk
321 CLO 4mM 0.78 >More info -0.01 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
322 protoplasts T0 [flg22] -0.56 >More info -0.21 >More info protoplasts T0 [CPK] mesophyll protoplasts Original data GEO bulk
323 irradiated leaf (WT 1d) 0.59 >More info 0.18 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
324 VND6 0h 0.66 >More info 0.11 >More info wt 0h Original data GEO bulk
325 calcicole ecotype Cal-0 0.67 >More info 0.10 >More info Col-4 1 mM CaCl2 Original data GEO bulk
326 pistil 0.5HAP 0.59 >More info 0.18 >More info unpollinated pistil pistil Original data GEO bulk
327 KAN1 0.66 >More info 0.11 >More info Control for tissue data shoot apical meristem Original data GEO bulk
328 Atss3 Dark8 -0.56 >More info -0.21 >More info Atss3 Dark0.5 Original data GEO bulk
329 WT flg22 2h 0.54 >More info 0.23 >More info WT 0h Leaf tissue Original data GEO bulk
330 root - 04% oxygen - 2h -0.22 >More info -0.55 >More info root - 21% oxygen - 2h Original data GEO bulk
331 SCR-GR Time 3H Dex 0.22 >More info 0.55 >More info SCR-GR Time 0H Dex Dex media for 3 hours Original data GEO bulk
332 Shoot apex vegetative &Young leaves 0.69 >More info 0.08 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
333 flu 0.68 >More info 0.08 >More info WT Col Original data GEO bulk
334 20h Col-0 -0.52 >More info -0.24 >More info 00h Col-0 Original data GEO bulk
335 lug3 leaves 0.73 >More info 0.03 >More info WT-leaves matured rosette leaves Original data GEO bulk
336 Light 0.67 >More info 0.09 >More info Control Original data GEO bulk
337 Nicotinamide-93hr 0.50 >More info 0.26 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
338 atmospheric CO2 high Mg shoot 0.66 >More info 0.10 >More info atmospheric CO2 normal Mg shoot Shoot Original data
339 35S::ERF104 H2O 4h 0.69 >More info 0.07 >More info Col-0 H2O 4h Original data GEO bulk
340 rGRF3x35S:GIF -0.60 >More info -0.16 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
341 SAM SE 35S:AGL15 0.58 >More info 0.18 >More info SAM SE Col Original data GEO bulk
342 frb1 mutant 0.57 >More info 0.19 >More info WT whole seedling Original data GEO bulk
343 Wounding Stress3 h (shoot) 0.65 >More info 0.11 >More info Stress mock 3 h (shoot) Original data Stress treatments
344 Col-0 drought -0.54 >More info -0.22 >More info Col-0 control Original data GEO bulk
345 Col-Luc WT 3h antimycin A 0.52 >More info 0.24 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
346 Col upon hypoxia 6 hrs 0.54 >More info 0.21 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
347 Shoot P recovery 0.74 >More info 0.01 >More info Shoot -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
348 Sepals stage15 0.63 >More info 0.12 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
349 +GA-30mins 0.51 >More info 0.24 >More info -30mins whole plant Original data GEO bulk
350 A. lyrata -0.53 >More info -0.22 >More info A. thaliana mature leaves before flowering Original data GEO bulk
351 HMG 0.64 >More info 0.11 >More info Control for tissue data shoot apical meristem Original data GEO bulk
352 sid2-2 9 hpi A. brassicicola 0.75 >More info 0.00 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
353 Cauline leaves 0.61 >More info 0.14 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
354 mature endodermis glcal 0.63 >More info 0.11 >More info Control for tissue data endodermis Original data GEO bulk
355 sid2 -0.64 >More info -0.10 >More info Col rosettes Original data GEO bulk
356 piffq FR 24h -0.51 >More info -0.23 >More info WT FR 24h whole seedling Original data GEO bulk
357 Col-0-30min IAA 0.57 >More info 0.17 >More info Col-0-0h IAA whole plant Original data GEO bulk
358 essp3/brm5 mutant 0.69 >More info 0.05 >More info WT (Pro-beta-CG;GUS) Original data GEO bulk
359 phyB Dark 0.59 >More info 0.15 >More info WT(Ler) Dark Original data GEO bulk
360 bZIP1ko mutant N+Light- 0.53 >More info 0.21 >More info WT-sib N+Light- whole plant Original data GEO bulk
361 ga1-3 1h GA4 -0.57 >More info -0.17 >More info ga1-3 1h water shoots Original data GEO bulk
362 S17 0.63 >More info 0.11 >More info Control for tissue data shoot apical meristem Original data GEO bulk
363 nia1nia2noa1-2 0.65 >More info 0.09 >More info Col-0 whole seedlings Original data GEO bulk
364 atr mock 0.59 >More info 0.15 >More info WT mock shoot apical meristem Original data
365 mutant acs5C (single mutant) -0.72 >More info -0.01 >More info col control (single mutant) Original data GEO bulk
366 RPL18 TuMV inoculated polysomal RNA -0.64 >More info -0.09 >More info mock inoculated polysomal RNA PO Original data GEO bulk
367 overexpresser LBD37 in -N 0.66 >More info 0.07 >More info WT in -N nitrogen depletion whole seedling Original data GEO bulk
368 NAA -AA -0.52 >More info -0.21 >More info B5 -AA B5 media supplemented with 4.5 µM NAA and untreated Original data
369 ein2-1 9 hpi A. brassicicola 0.62 >More info 0.11 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
370 GST NPP1 4 h (leaf) 0.51 >More info 0.22 >More info Mock 4 h (leaf) Original data Elicitor treatments
371 rosette leaves fdh 0.64 >More info 0.09 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
372 IAA 1 h 0.53 >More info 0.20 >More info Mock 1 h Original data Basic hormone treatment of seedlings
373 myb50 xylem 0.70 >More info 0.03 >More info wt xylem xylem Original data GEO bulk
374 WT resupplied Pi 4h 0.66 >More info 0.07 >More info WT complete seedlings Original data
375 epiF3 -0.57 >More info -0.16 >More info WT Col-0 aerial part Original data
376 GO5; 8h switch to ambient CO2 concentrations; 0.60 >More info 0.13 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
377 tbf1-mock infiltration -0.52 >More info -0.21 >More info WT-mock infiltration water for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
378 P.p 6hai 0.55 >More info 0.17 >More info At-Control roots Original data GEO bulk
379 psae1-3 stn7-1 0.55 >More info 0.17 >More info WS rosette leaves Original data GEO bulk
380 wrky33 mock 0.68 >More info 0.04 >More info WT mock 14 hour mock control leaves Original data
381 gun5 control 0.56 >More info 0.16 >More info Col-0 control Original data GEO bulk
382 Leaf 0.60 >More info 0.12 >More info Control for tissue data leaf Original data GEO bulk
383 gai MeJA 1h -0.54 >More info -0.18 >More info Laer MeJA 1h leaf discs Original data GEO bulk
384 des1 water -0.57 >More info -0.15 >More info WT water water leaf Original data GEO bulk
385 rli 0.54 >More info 0.18 >More info WT whole plant Original data GEO bulk
386 oas-a1.1 shoot -0.58 >More info -0.14 >More info WT-Untreated Shoot Original data GEO bulk
387 FLIGHT TAGESB plate 0.61 >More info 0.11 >More info GROUND CONTROL TAGESB plate Original data
388 flu over-tAPX 0.60 >More info 0.12 >More info WT Col Original data GEO bulk
389 dde2-2 9 hpi A. brassicicola 0.67 >More info 0.04 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
390 mpk6-ko H2O 4h 0.68 >More info 0.03 >More info Col-0 H2O 4h Original data GEO bulk
391 erf115ko roottip5days -0.55 >More info -0.16 >More info Col-0 roottip5days root tips Original data
392 phyAphyB Dark -0.54 >More info -0.17 >More info phyB Dark Original data GEO bulk
393 Chitin 0.50 >More info 0.21 >More info Col C Original data GEO bulk
394 EL (leaves 1-2) 14DAS 0.59 >More info 0.12 >More info Control for tissue data Original data GEO bulk
395 ATR1 OE -0.63 >More info -0.08 >More info WT for ATR1/MYB51 Original data GEO bulk
396 HSP90 Reduced RNAi-A2 0.50 >More info 0.21 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
397 Chemically 0.11 >More info 0.60 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
398 Col-0 wt Hypoxic 0.53 >More info 0.17 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
399 Atape2 low light 0.65 >More info 0.05 >More info Control for tissue data shoot apical meristem Original data GEO bulk
400 iae1 -0.14 >More info -0.56 >More info B179 Original data GEO bulk
401 LAS 0.64 >More info 0.06 >More info Control for tissue data shoot apical meristem Original data GEO bulk
402 vte2-1 3d vernalization 0.57 >More info 0.13 >More info WT 3d vernalization Original data GEO bulk
403 endosperm ABA -0.57 >More info -0.13 >More info endosperm-control ABA endosperm Original data GEO bulk
404 efr-1 +elf18 10h -0.50 >More info -0.20 >More info WT +elf18 10h elf18 Original data GEO bulk
405 HDG4 0.64 >More info 0.06 >More info Control for tissue data shoot apical meristem Original data GEO bulk
406 elevated CO2 high Mg shoot -0.58 >More info -0.12 >More info atmospheric CO2 high Mg shoot Shoot Original data
407 DUO1 induced 24h 0.18 >More info 0.52 >More info 24hr-not-induced whole plant Original data GEO bulk
408 12h volatiles Sm. R3089 0.11 >More info 0.59 >More info 12h untreated whole seedling Original data GEO bulk
409 Bud 0.64 >More info 0.05 >More info Control for tissue data pollen grains and tubes Original data
410 hai1-2 low water potential 0.53 >More info 0.16 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
411 Flagellin 4 h (leaf) 0.53 >More info 0.16 >More info Mock 4 h (leaf) Original data Elicitor treatments
412 leaf 0.58 >More info 0.11 >More info Control for tissue data leaf Original data GEO bulk
413 Col-0 9 hpi A. brassicicola 0.59 >More info 0.10 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
414 ptpks2 -0.06 >More info -0.63 >More info Col-WT leaves Original data GEO bulk
415 Hypocotyl 0.63 >More info 0.05 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
416 QC pSCR(QC pSCRBRI1) 8h BL -0.16 >More info -0.52 >More info QC pSCR(QC pSCRBRI1) 0h BL brassinosteroid root Original data
417 T8 leaf-drought -0.58 >More info -0.10 >More info T8 leaf-well watered Original data GEO bulk
418 Laer MeJA 1h 0.50 >More info 0.18 >More info Laer Control leaf discs Original data GEO bulk
419 Col-0 35S:MBS1 HL 3h -0.56 >More info -0.11 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
420 msh1 albino 0.65 >More info 0.02 >More info WT aerial part Original data GEO bulk
421 endosperm paclobutrazol -0.56 >More info -0.11 >More info endosperm-control paclobutrazol endosperm Original data GEO bulk
422 ataf1-1 mutant Col-0 Bgh inoculated 0.52 >More info 0.15 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
423 rcf1-1 cold 0h 0.54 >More info 0.13 >More info WT cold 0h Control seedlings Original data GEO bulk
424 Dex-rga(delta17) 4h GA4 -0.59 >More info -0.08 >More info Vector 4h GA4 shoots Original data GEO bulk
425 differentiating xylem 0.60 >More info 0.07 >More info Control for tissue data xylem Original data GEO bulk
426 Col-0 37C 0.55 >More info 0.11 >More info Col-0 22C Original data GEO bulk
427 WT (Ler) TSA 0.51 >More info 0.15 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and 100 ng/ml TSA. tissue culture Original data GEO bulk
428 Mutant siz1-3 (Drought) 0.53 >More info 0.13 >More info Col-0 (Drought) Original data GEO bulk
429 siz1-3 drought 0.53 >More info 0.13 >More info Col-0 drought Original data GEO bulk
430 amiR-tor induced 6d -0.50 >More info -0.16 >More info amiR-tor 6d C 6 days estradiol-treated seedlings Original data GEO bulk
431 VND6 12h 0.60 >More info 0.06 >More info wt 12h Original data GEO bulk
432 WT (Col-0) inflorescence well-watered day 5 -0.52 >More info -0.13 >More info WT (Col-0) inflorescence well-watered day 0 Unopen flower buds Original data GEO bulk
433 Tsu 0.56 >More info 0.09 >More info Col-0 Original data GEO bulk
434 WT no Pi 0.55 >More info 0.10 >More info WT complete seedlings Original data
435 Anoxia 0.53 >More info 0.12 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
436 Rosette leaf No12 0.57 >More info 0.08 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
437 IAA7mII over-expressor IAA Treated -0.04 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
438 miR393 flg22 1h 0.53 >More info 0.11 >More info WT 0h Leaf tissue Original data GEO bulk
439 Heat and anoxia 0.51 >More info 0.13 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
440 35SPaWRKY1 -0.51 >More info -0.13 >More info Vector Seedlings including shoot and root Original data GEO bulk
441 JA 24h -0.65 >More info 0.01 >More info EtOH 24h 24hr Original data GEO bulk
442 WT leaves - Fe 0.55 >More info 0.09 >More info WT leaves + Fe Leaves Original data GEO bulk
443 Apex 5DAS 0.53 >More info 0.10 >More info Control for tissue data Original data GEO bulk
444 Infected Col-0 leaf -0.63 >More info 0.00 >More info Mock Col-0 leaf F. oxysporum leaf Original data GEO bulk
445 downy mildew cotyledons late stage 0.55 >More info 0.08 >More info mock inoculated Cotyledons Original data GEO bulk
446 35S::CYC 0.51 >More info 0.12 >More info thaliana control secondary inflorescence Original data
447 AsAKiin11 T3 -0.50 >More info -0.13 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
448 08h Col-0 -0.55 >More info -0.08 >More info 00h Col-0 Original data GEO bulk
449 scl3 -0.50 >More info -0.13 >More info Col-0 whole root Original data GEO bulk
450 Shoot apex vegetative 0.57 >More info 0.06 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
451 DUO1 induced 6h 0.06 >More info 0.56 >More info 6hr-not-induced whole plant Original data GEO bulk
452 Stem 1st node 0.53 >More info 0.09 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
453 mutant acs9B (single mutant) -0.61 >More info -0.01 >More info col control (single mutant) Original data GEO bulk
454 pGL3::GL3-GR Dex 4 hours -0.61 >More info -0.01 >More info pGL3::GL3-GR mock 4 hours Original data GEO bulk
455 Atwrky40 -0.58 >More info -0.04 >More info Col0 none leaf Original data GEO bulk
456 Stem 2ndinternode 0.53 >More info 0.09 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
457 mutant acs1A (single mutant) -0.65 >More info 0.03 >More info col control (single mutant) Original data GEO bulk
458 WT NAA/flg 1h 0.50 >More info 0.12 >More info WT 0h Leaf tissue Original data GEO bulk
459 C2 leaf-drought -0.62 >More info -0.00 >More info C2 leaf-well watered Original data GEO bulk
460 15m light -0.59 >More info -0.03 >More info before light whole seedlings Original data GEO bulk
461 C2H2 ZF TDNA mutant -0.51 >More info -0.11 >More info Col-WT mature pollen Original data GEO bulk
462 oas-a1.1 root -0.09 >More info -0.53 >More info WT-Untreated Root Original data GEO bulk
463 Col-0 Flg22 4h 0.69 >More info -0.07 >More info Col-0 H2O 4h Original data GEO bulk
464 4x 0.56 >More info 0.05 >More info 2x two week old seedlings Original data
465 root longitudinal zone-3 -Fe 0.58 >More info 0.03 >More info root longitudinal zone-3 standard Original data GEO bulk
466 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.59 >More info 0.02 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
467 ani1 T16 -0.50 >More info -0.11 >More info WT T16 root tissue Original data GEO bulk
468 amiR-ETP1/2 0.56 >More info 0.04 >More info Col-0 air Original data GEO bulk
469 cat2-2; 8h switch to ambient CO2 concentrations; -0.05 >More info -0.55 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
470 cortex 0.57 >More info 0.03 >More info Control for tissue data cortex Original data GEO bulk
471 Pedicels stage15 0.51 >More info 0.09 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
472 coi1 -0.60 >More info 0.00 >More info Col-0 Leaves Original data GEO bulk
473 Van 0.57 >More info 0.03 >More info Col-0 Original data GEO bulk
474 WT (Col-0) inflorescence well-watered day 4 -0.51 >More info -0.09 >More info WT (Col-0) inflorescence well-watered day 0 Unopen flower buds Original data GEO bulk
475 WT 90-105 min Xanthomonas 0.57 >More info 0.03 >More info WT T0 Original data GEO bulk
476 S82-2 -0.52 >More info -0.08 >More info wt Original data GEO bulk
477 atsf1-2 mutant seedling -0.73 >More info 0.13 >More info Col-0 seedling seedlings Original data
478 shoots WT 0uM Fe 0.56 >More info 0.03 >More info shoots WT 100uM Fe 0uM Fe shoots Original data GEO bulk
479 Van SA 0.55 >More info 0.04 >More info Col-0 SA Original data GEO bulk
480 RPL18 TuMV inoculated total RNA -0.56 >More info -0.03 >More info mock inoculated total RNA PO Original data GEO bulk
481 Total RNA 35S:HF-RPL18 0.52 >More info 0.07 >More info Total RNA csp1 12h non-stress rosettes Original data GEO bulk
482 miR393 0h -0.51 >More info -0.08 >More info WT 0h Leaf tissue Original data GEO bulk
483 Laer pretreat GA Flg22 1h -0.12 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
484 root longitudinal zone-3 low sulfur -0.51 >More info -0.07 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
485 WT leaf-drought -0.51 >More info -0.07 >More info WT leaf-well watered Original data GEO bulk
486 cov1 cov2 stem Base 0.52 >More info 0.06 >More info WT stem Base stem Base Original data GEO bulk
487 Root P recovery 0.53 >More info 0.05 >More info Root -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
488 CHLD reduction 0.54 >More info 0.04 >More info Col-0 dex green tissue Original data GEO bulk
489 current injection 0.56 >More info 0.02 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
490 mbd11 mutant thaliana 10-day-old seedling 0.50 >More info 0.08 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
491 WT (Col-0) inflorescence moderate drought day 3 -0.50 >More info -0.08 >More info WT (Col-0) inflorescence well-watered day 0
[C02]		 Unopen flower buds Original data
492 siliques WT hypoxia 0.56 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
493 TaFLS overexpression line (OE2) -0.52 >More info -0.05 >More info Col-0 Rosette leaves Original data
494 shoot hypoxia pSUC2 0.64 >More info -0.07 >More info shoot hypoxia total Original data GEO bulk
495 Col-0 ozone 0.52 >More info 0.05 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
496 WR 35S 8h BL 0.51 >More info 0.06 >More info WR 35S 0h BL brassinosteroid root Original data
497 coi1-16 ein2 sid2 ozone 0.52 >More info 0.05 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
498 WT Col-0 Bgh inoculated 0.54 >More info 0.03 >More info WT Col-0 Un-inoculated Original data GEO bulk
499 AFB1 flg22 1h 0.51 >More info 0.06 >More info WT 0h Leaf tissue Original data GEO bulk
500 eds16 laser microdissected 5 dpi -0.60 >More info 0.03 >More info Col laser microdissected 5 dpi LMD leaf epidermal and mesophyll cells Original data GEO bulk
501 FAMA induced 48h -0.50 >More info -0.06 >More info control 48h Whole seedling Original data GEO bulk
502 Root -P -0.51 >More info -0.05 >More info Root Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
503 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.52 >More info 0.04 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
504 eds16 whole leaf 7d UI 0.56 >More info 0.00 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
505 cpr5 sim smr1 -0.52 >More info -0.04 >More info WT seedling Original data GEO bulk
506 pmr5 0.53 >More info 0.03 >More info Col-0 rosette Original data GEO bulk
507 coi1-16 ein2 sid2 ctrl -0.53 >More info -0.03 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
508 P.syringae vir 4 h (leaf) 0.62 >More info -0.06 >More info Mock 4 h (leaf) Original data Elicitor treatments
509 RRE1 Chitin 0.53 >More info 0.02 >More info Chitin Original data GEO bulk
510 in vivo pollen tube 0.51 >More info 0.04 >More info Control for tissue data pollen tube Original data GEO bulk
511 vtc2-1 -0.54 >More info -0.01 >More info Col-0 whole plant Original data GEO bulk
512 phloem sieve cells and companion cells 0.51 >More info 0.04 >More info Control for tissue data phloem Original data GEO bulk
513 WT (Col-0) inflorescence moderate drought day 4 -0.53 >More info -0.02 >More info WT (Col-0) inflorescence well-watered day 0
[C02]		 Unopen flower buds Original data
514 rosette Dark Wounded 0.69 >More info -0.14 >More info rosette Dark Control Original data GEO bulk
515 Atwrky63 -0.53 >More info -0.01 >More info Col0 none leaf Original data GEO bulk
516 seedling 24h after HZE WT 0.66 >More info -0.12 >More info seedling day 2 unirradiated WT 24h Original data
517 JMJ24-IBM1 double knockout -0.51 >More info -0.03 >More info WT Original data GEO bulk
518 seed during stratification 12 h S 0.50 >More info 0.04 >More info Control for tissue data seed Original data GEO bulk
519 erf104-ko H2O 4h 0.61 >More info -0.07 >More info Col-0 H2O 4h Original data GEO bulk
520 rdr6-15 -0.58 >More info 0.04 >More info Col-0 Original data GEO bulk
521 C24 ozone 0.51 >More info 0.02 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
522 atmyc2 Seedling BL 0.02 >More info -0.55 >More info WT Seedling BL Original data GEO bulk
523 PBZ -0.51 >More info -0.01 >More info none PBZ Rosette Original data GEO bulk
524 HAP5-triple-mutant 0.51 >More info 0.01 >More info Col control above-ground whole plant Original data GEO bulk
525 rdr6-11 0.63 >More info -0.11 >More info Col-0 aerial tissue Original data
526 ADD3 0.60 >More info -0.09 >More info WT aerial part Original data GEO bulk
527 Dex-rga(delta17) 4h GA4+DEX -0.50 >More info -0.01 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
528 Drought Stress 24 h (root) -0.53 >More info 0.02 >More info Stress mock 24 h (root) Original data Stress treatments
529 WT Bc inoculation 14h 0.50 >More info 0.01 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
530 Mature roots 0.53 >More info -0.02 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
531 AsAKiin11 T2 -0.56 >More info 0.05 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
532 sicy-192 gun1-101 cotyledons 0.54 >More info -0.04 >More info WT cotyledons cotyledons Original data
533 penta MeJA 1h 0.58 >More info -0.08 >More info Laer MeJA 1h leaf discs Original data GEO bulk
534 psad1-1 stn7-1 -0.51 >More info 0.02 >More info Col-0 rosette leaves Original data GEO bulk
535 atr zebularine 0.62 >More info -0.13 >More info WT zebularine shoot apical meristem Original data
536 xyl-grown cell culture- 1h 1mM Suc 0.19 >More info -0.67 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
537 shoot control pRBCS 0.58 >More info -0.10 >More info shoot control total Original data GEO bulk
538 ice1 control 0.57 >More info -0.09 >More info WT control Original data GEO bulk
539 shoot control pCER5 0.51 >More info -0.03 >More info shoot control total Original data GEO bulk
540 t-zeatin 0.5 h -0.10 >More info 0.58 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
541 afb3-1 2h KNO3 0.56 >More info -0.09 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
542 Mutant arf2-6 -0.53 >More info 0.06 >More info Col Original data GEO bulk
543 Laer Flg22+GA 1h 0.51 >More info -0.04 >More info Laer Control leaf discs Original data GEO bulk
544 rts1-5 0.50 >More info -0.03 >More info null-mutant whole plant Original data GEO bulk
545 P35S:rGRF1 -0.51 >More info 0.05 >More info Col-0 Original data GEO bulk
546 Dark 40min pls UV-AB 5min 0.51 >More info -0.05 >More info Dark 45 min Original data Light treatments
547 WT roots - Fe 0.51 >More info -0.06 >More info WT roots + Fe Roots Original data GEO bulk
548 AZC 0.54 >More info -0.10 >More info noneHS Original data GEO bulk
549 etiolated atbzip16 0.54 >More info -0.10 >More info etiolated Ler etiolated aerial part of seedlings Original data GEO bulk
550 0h hml 0.53 >More info -0.11 >More info 0h wt Original data
551 F1 whole seedlings root 0.53 >More info -0.11 >More info Col whole seedlings root Seedlings Original data GEO bulk
552 Dex-rga(delta17) 2h GA4 -0.56 >More info 0.14 >More info Vector 4h GA4 shoots Original data GEO bulk
553 xrn4-5 flower -0.56 >More info 0.15 >More info Col-0 flower inflorescence Original data GEO bulk
554 Whole root - S 24H -0.53 >More info 0.12 >More info Whole root - S 0H Original data GEO bulk
555 Col laser microdissected 5 dpi 0.50 >More info -0.09 >More info Col laser microdissected 5d UI LMD leaf epidermal and mesophyll cells Original data GEO bulk
556 tga2 tga5 tga6 ctrl -0.60 >More info 0.19 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) control Original data
557 swn-7 -0.61 >More info 0.22 >More info Col whole plant Original data GEO bulk
558 Col BTH -0.28 >More info 0.67 >More info Col rosettes Original data GEO bulk
559 spx1 spx2 resupplied Pi 4h -0.62 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
560 DUO1 induced 12h -0.12 >More info 0.50 >More info 12hr-not-induced whole plant Original data GEO bulk
561 MPK6 ox Shoot Hypoxia 0.57 >More info -0.19 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
562 seedling 24h after Gamma WT 0.55 >More info -0.18 >More info seedling day 2 unirradiated WT 24h Original data
563 CCA1-ox 6am non-polysomal -0.14 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
564 AsAKiin11 T1 -0.62 >More info 0.26 >More info C2 C2del and (As)AKiin11 control T1 one day post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
565 ga1-3/brm-1 0.53 >More info -0.19 >More info wt shoots Original data GEO bulk
566 IBM1 knockout 0.23 >More info -0.55 >More info WT Original data GEO bulk
567 M6PR transgenic leaf 100mM NaCl -0.52 >More info 0.21 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
568 shoot hypoxia total 0.58 >More info -0.27 >More info shoot control total Original data GEO bulk
569 TaFLS overexpression line (OE1) -0.53 >More info 0.25 >More info Col-0 Rosette leaves Original data
570 IRP1-OE-Fe--shoot 0.52 >More info -0.25 >More info COL-0-Fe--shoot shoot Original data
571 NJ15 0.50 >More info -0.25 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
572 35S:MYB28 like miR -0.27 >More info 0.51 >More info WT for miR Original data GEO bulk
573 pGL3::GL3-GR Dex 24hours -0.61 >More info 0.39 >More info pGL3::GL3-GR mock 24hours Original data GEO bulk
574 35S:miR396 0.63 >More info -0.42 >More info WT 0 days-old seedlings. Original data GEO bulk
575 nrpe1 -0.52 >More info 0.35 >More info WT Original data
576 ARR22-ox -0.64 >More info 0.48 >More info Col-0 Original data Cytokinin treatment of seedlings
577 Ba1 UV 0.57 >More info -0.50 >More info Ba1 mock UV seedling Original data