shoot hypoxia total

4.0:Analysis result - correlation network

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Module-based correlation network(MCN) centered on shoot hypoxia total

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List of experiments correlated with "shoot hypoxia total"

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Score	Experiment	Correlation from shoot hypoxia total	Correlation to shoot hypoxia total	Control Experiment	Treatment	Tissue	Link to original data	Experimental Category
1	shoot hypoxia total	1.00 >More info	1.00 >More info	shoot control total			Original data	GEO bulk
2	Col-0 2HS	0.92 >More info	0.83 >More info	Col-0NS	2 h hypoxia stress (2HS)	7-day-old seedlings	Original data
3	WT Shoot Hypoxia	0.89 >More info	0.86 >More info	WT Shoot Normoxia (mock)	Hypoxia	Shoot	Original data	GEO bulk
4	MPK6 ox Shoot Hypoxia	0.87 >More info	0.85 >More info	WT Shoot Normoxia (mock)	Hypoxia	Shoot	Original data	GEO bulk
5	2 hr Hypoxia Total RNA	0.89 >More info	0.81 >More info	2 hr Non-Stress Total RNA		seedlings	Original data	GEO bulk
6	2 hr Hypoxia IP RNA	0.84 >More info	0.80 >More info	2 hr Non-Stress IP RNA		seedlings	Original data	GEO bulk
7	Col-0 wt Hypoxic	0.85 >More info	0.78 >More info	Col-0 wt Aerobic	hypoxic treatment		Original data	GEO bulk
8	root - 01% oxygen - 2h	0.78 >More info	0.84 >More info	root - 21% oxygen - 2h			Original data	GEO bulk
9	9 hr Hypoxia Total RNA	0.87 >More info	0.74 >More info	9 hr Non-Stress Total RNA		seedlings	Original data	GEO bulk
10	WT Root Hypoxia	0.78 >More info	0.80 >More info	WT Root Normoxia (mock)	Hypoxia	Root	Original data	GEO bulk
11	9 hr Hypoxia IP RNA	0.84 >More info	0.72 >More info	9 hr Non-Stress IP RNA		seedlings	Original data	GEO bulk
12	root hypoxia total	0.81 >More info	0.73 >More info	root control total			Original data	GEO bulk
13	roottip hypoxia total	0.79 >More info	0.73 >More info	roottip control total			Original data	GEO bulk
14	root - 04% oxygen - 2h	0.68 >More info	0.81 >More info	root - 21% oxygen - 2h			Original data	GEO bulk
15	MPK6 ox Root Hypoxia	0.76 >More info	0.73 >More info	WT Root Normoxia (mock)	Hypoxia	Root	Original data	GEO bulk
16	root - 08% oxygen - 30min	0.70 >More info	0.76 >More info	root - 21% oxygen - 30min			Original data	GEO bulk
17	Aerobic e1 ate2	0.70 >More info	0.75 >More info	Aerobic Col-0	aerobic (normal) conditions	seedlings	Original data	GEO bulk
18	root - 04% oxygen - 48h	0.64 >More info	0.78 >More info	root - 21% oxygen - 48h			Original data	GEO bulk
19	root - 01% oxygen - 30min	0.66 >More info	0.76 >More info	root - 21% oxygen - 30min			Original data	GEO bulk
20	root - 08% oxygen - 2h	0.60 >More info	0.81 >More info	root - 21% oxygen - 2h			Original data	GEO bulk
21	9 hr Hypoxia 1 hr recovery IP RNA	0.76 >More info	0.63 >More info	9 hr Non-Stress IP RNA		seedlings	Original data	GEO bulk
22	root - 04% oxygen - 30min	0.61 >More info	0.77 >More info	root - 21% oxygen - 30min			Original data	GEO bulk
23	9 hr Hypoxia 1 hr recovery Total RNA	0.77 >More info	0.60 >More info	9 hr Non-Stress Total RNA		seedlings	Original data	GEO bulk
24	Aerobic prt6	0.64 >More info	0.71 >More info	Aerobic Col-0	aerobic (normal) conditions	seedlings	Original data	GEO bulk
25	Col-0 low oxygen	0.79 >More info	0.45 >More info	Col-0 control	low oxygen	root	Original data	GEO bulk
26	0.2µM SMX	-0.65 >More info	-0.58 >More info	control		Whole seedling	Original data	GEO bulk
27	Anoxia	0.68 >More info	0.54 >More info	Control	anoxia for 6h at 23°C in the dark.		Original data	GEO bulk
28	mdh	-0.62 >More info	-0.55 >More info	Col			Original data	GEO bulk
29	root - 08% oxygen - 48h	0.46 >More info	0.71 >More info	root - 21% oxygen - 48h			Original data	GEO bulk
30	root - 01% oxygen - 48h	0.71 >More info	0.45 >More info	root - 21% oxygen - 48h			Original data	GEO bulk
31	pepr1-1 Pepr2-3 untreated	0.57 >More info	0.59 >More info	WT untreated	untreated		Original data	GEO bulk
32	20m.KCl	-0.57 >More info	-0.57 >More info	To.	KCl	14 day old Roots	Original data	GEO bulk
33	Col upon hypoxia 6 hrs	0.74 >More info	0.39 >More info	Col upon normoxia	hypoxia	seedling roots	Original data	GEO bulk
34	TNT-seedlings	0.60 >More info	0.53 >More info	DMF-control-seedlings	TNT-treated-seedlings	whole plant	Original data	GEO bulk
35	gun1gun5 Norflurazon	0.68 >More info	0.44 >More info	Norflurazon	a herbicide (Norflurazon)	seedling	Original data	GEO bulk
36	hypoxic	0.65 >More info	0.47 >More info	WT aerobic	hypoxia		Original data	GEO bulk
37	estradiole-induced ANAC059	-0.56 >More info	-0.53 >More info	transgenic (empty vector inducible system)			Original data	GEO bulk
38	ein2 1% sucrose 14-day-old	0.48 >More info	0.58 >More info	Col-0 1% sucrose 14-day-old			Original data	GEO bulk
39	Col BTH	0.39 >More info	0.67 >More info	Col		rosettes	Original data	GEO bulk
40	RRE2 Chitin	0.67 >More info	0.36 >More info	Chitin			Original data	GEO bulk
41	35S:PCO1 hypoxia	-0.51 >More info	-0.52 >More info	WT hypoxia		whole rosette	Original data
42	Col0-PsmES4326-24hpi	0.42 >More info	0.61 >More info	Col0-mock-24hpi		leaf	Original data	GEO bulk
43	WT seedlings MV	0.60 >More info	0.42 >More info	WT seedlings control		Seedlings	Original data	GEO bulk
44	ein3 eil1	0.66 >More info	0.36 >More info	Col-0 mock		Whole seedling	Original data	GEO bulk
45	1.5 hr ammonium	0.70 >More info	0.32 >More info	immediately prior to nitrogen addtion		roots from hydroponically grown plants	Original data	GEO bulk
46	OE-HRA1 2HS	-0.55 >More info	-0.46 >More info	Col-0 2HS	2 h hypoxia stress (2HS)	7-day-old seedlings	Original data
47	Light	0.63 >More info	0.38 >More info	Control			Original data	GEO bulk
48	Ws seedlings	-0.56 >More info	-0.45 >More info	ged1 seedlings			Original data	GEO bulk
49	ged1 seedlings	0.56 >More info	0.45 >More info	Ws seedlings			Original data	GEO bulk
50	ptpks2	-0.42 >More info	-0.58 >More info	Col-WT		leaves	Original data	GEO bulk
51	Col in Pi deficiency medium	0.55 >More info	0.44 >More info	Col in control medium		root	Original data	GEO bulk
52	ein3 eil1 JA	0.49 >More info	0.50 >More info	JA		Whole seedling	Original data	GEO bulk
53	estradiole-induced ANAC092	-0.59 >More info	-0.39 >More info	transgenic (empty vector inducible system)			Original data	GEO bulk
54	root callus inducing medium 24h	-0.67 >More info	-0.31 >More info	root callus inducing medium 0 h	24 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
55	shoot-10 μM DEX- 24hr	0.46 >More info	0.52 >More info	shoot-10 μM DEX- 0 hr	SHR induction by DEX	whole shoot	Original data
56	35S::HRE1 Hypoxic	0.65 >More info	0.32 >More info	Col-0 wt Hypoxic	hypoxic treatment		Original data	GEO bulk
57	prt6-1	0.56 >More info	0.41 >More info	Col-0	imbibed for 24 h	Pre-germinated seeds	Original data	GEO bulk
58	FHY3p dark+DEX	-0.67 >More info	-0.29 >More info	FHY3p dark+mock			Original data	GEO bulk
59	root callus inducing medium 12 h	-0.63 >More info	-0.32 >More info	root callus inducing medium 0 h	12 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
60	Rose Bengal 0.5 uM	0.34 >More info	0.59 >More info	Control RB and PER	Rose Bengal		Original data
61	siliques AtHb1 control	0.40 >More info	0.52 >More info	siliques WT control	control	silique	Original data	GEO bulk
62	Heat and anoxia	0.51 >More info	0.41 >More info	Control	treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark.		Original data	GEO bulk
63	shoot control pRBCS	0.52 >More info	0.39 >More info	shoot control total			Original data	GEO bulk
64	RRE1 Chitin	0.65 >More info	0.25 >More info	Chitin			Original data	GEO bulk
65	oas-a1.1 root	-0.55 >More info	-0.35 >More info	WT-Untreated		Root	Original data	GEO bulk
66	DFPM	0.62 >More info	0.28 >More info	control			Original data	GEO bulk
67	CeO2 germinant	-0.68 >More info	-0.21 >More info	Millipore Water germinant	CeO2	seedling	Original data
68	upf3	0.54 >More info	0.35 >More info	WT		whole plant	Original data	GEO bulk
69	IAA/inhibitor A Treated	0.57 >More info	0.32 >More info	IAA Treated			Original data	GEO bulk
70	max4 hypocotyl	0.60 >More info	0.29 >More info	wt hypocotyl		hypocotyl	Original data	GEO bulk
71	SA 4mM	0.32 >More info	0.57 >More info	untreated	4 weeks old at time of treatment	whole leaf	Original data	GEO bulk
72	seed germinating in countinuous light 24h SL	0.21 >More info	0.67 >More info	Control for tissue data		seed	Original data	GEO bulk
73	SCR-GR Time 12H Dex	0.57 >More info	0.31 >More info	SCR-GR Time 0H Dex	Dex media for 12 hours		Original data	GEO bulk
74	Drought Stress 24 h (root)	-0.53 >More info	-0.34 >More info	Stress mock 24 h (root)			Original data	Stress treatments
75	Leafminer damaged seedlings	0.30 >More info	0.56 >More info	Healthy seedlings		leaves	Original data	GEO bulk
76	35S:RPS4 eds1-2 2h	-0.34 >More info	-0.52 >More info	35S:RPS4 2h		leaves	Original data
77	15m.KCl	0.50 >More info	0.36 >More info	To.	KCl	14 day old Roots	Original data	GEO bulk
78	root callus inducing medium 48 h	-0.57 >More info	-0.29 >More info	root callus inducing medium 0 h	48 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
79	ckh1 CK25	0.50 >More info	0.35 >More info	WT (Ler) CK25	cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin.	tissue culture	Original data	GEO bulk
80	Col-0 low oxygen	0.68 >More info	0.16 >More info	Col-0			Original data	GEO bulk
81	9m.KCl	0.55 >More info	0.29 >More info	To.	KCl	14 day old Roots	Original data	GEO bulk
82	CMP 24hr	0.53 >More info	0.31 >More info	Acetone 24hr		root	Original data	GEO bulk
83	Cs root	-0.57 >More info	-0.26 >More info	control root			Original data	GEO bulk
84	scl3	0.57 >More info	0.26 >More info	Col-0		whole root	Original data	GEO bulk
85	Bay-0-1h IAA	-0.51 >More info	-0.31 >More info	Bay-0-0h IAA		whole plant	Original data	GEO bulk
86	Hypoxic prt6	0.55 >More info	0.26 >More info	Hypoxic Col-0	hypoxic conditions	seedlings	Original data	GEO bulk
87	Col-Luc WT 3h antimycin A	0.53 >More info	0.28 >More info	Col-Luc WT mock	50 µM antimycin A for 3 hours	whole green tissue	Original data	GEO bulk
88	npr1-1 SA	-0.58 >More info	-0.23 >More info	Col-0 SA		complete seedling	Original data
89	GO5; harvested 8h continiously maintained in high CO2;	-0.24 >More info	-0.57 >More info	WT; harvested 8h continiously maintained in high CO2;		2 whole rosettes	Original data
90	etr1 1% sucrose 12-day-old	0.53 >More info	0.27 >More info	Col-0 1% sucrose 12-day-old			Original data	GEO bulk
91	Laer pretreat GA+JA Flg22 0h	0.57 >More info	0.23 >More info	Laer pretreat water control		leaf discs	Original data	GEO bulk
92	P.p 6hai	0.58 >More info	0.22 >More info	At-Control		roots	Original data	GEO bulk
93	Tsu -Fe 24h Roots	0.57 >More info	0.23 >More info	Tsu +Fe 24h Roots			Original data	GEO bulk
94	Tsu-1 -Fe 24h	0.57 >More info	0.23 >More info	Tsu-1 +Fe 24h		roots	Original data	GEO bulk
95	Tsu-1 -Fe 48h	0.66 >More info	0.13 >More info	Tsu-1 +Fe 24h		roots	Original data	GEO bulk
96	Tsu -Fe 48h Roots	0.66 >More info	0.13 >More info	Tsu +Fe 24h Roots			Original data	GEO bulk
97	ani1 T16	-0.56 >More info	-0.22 >More info	WT T16		root tissue	Original data	GEO bulk
98	Nuclear GSH1	-0.61 >More info	-0.17 >More info	Cytoplasmic GSH1	Control		Original data	GEO bulk
99	Shoot -K	0.50 >More info	0.27 >More info	Control-shoot			Original data	GEO bulk
100	K starvation (shoot)	0.50 >More info	0.27 >More info	Ws (shoot)			Original data	GEO bulk
101	afb3-1 2h KCl	-0.64 >More info	-0.10 >More info	Ws 2h KCl	2 hours of 5 mM KCl	Arabidopsis root	Original data	GEO bulk
102	Genotoxic Stress 3 h (root)	-0.50 >More info	-0.24 >More info	Stress mock 3 h (root)			Original data	Stress treatments
103	root cells epidermis 140mM NaCl 20 hours	0.54 >More info	0.20 >More info	root cells epidermis standard 1 hour		root cells epidermis	Original data
104	Octopus mutant DYG25	-0.55 >More info	-0.19 >More info	WS			Original data	GEO bulk
105	amiRAP hypoxic	-0.63 >More info	-0.11 >More info	hypoxic	hypoxia		Original data	GEO bulk
106	hira-protoplast	-0.55 >More info	-0.18 >More info	WT-protoplast		protoplast	Original data
107	3x(m)	-0.03 >More info	0.76 >More info	2x		two week old seedlings	Original data
108	Stem tissue 5 days NAA	0.55 >More info	0.17 >More info	Stem tissue T0	Stem tissue with NAA treatment	Stem tissue with NAA treatment	Original data	GEO bulk
109	P.p 2.5hai	0.52 >More info	0.20 >More info	At-Control		roots	Original data	GEO bulk
110	JMJ24 knockout	0.52 >More info	0.20 >More info	WT			Original data	GEO bulk
111	8 hr ammonium	0.61 >More info	0.11 >More info	immediately prior to nitrogen addtion		roots from hydroponically grown plants	Original data	GEO bulk
112	cngc1	-0.52 >More info	-0.19 >More info	Ws-2		Seedlings	Original data	GEO bulk
113	FarRed Light 4 h	0.21 >More info	0.50 >More info	White Light 4 h			Original data	Light treatments
114	SAM SE 35S:AGL15	0.50 >More info	0.20 >More info	SAM SE Col			Original data	GEO bulk
115	gai Control	0.55 >More info	0.14 >More info	Laer Control		leaf discs	Original data	GEO bulk
116	gun5 control	0.53 >More info	0.16 >More info	Col-0 control			Original data	GEO bulk
117	35S-MIF1 dark grown	0.55 >More info	0.13 >More info	Dark-grown WT control			Original data	GEO bulk
118	bri1-116	-0.05 >More info	0.73 >More info	Col		seedling	Original data	GEO bulk
119	mutant-line348	0.50 >More info	0.17 >More info	WT-control		whole plant	Original data	GEO bulk
120	Protoplast Induced	0.10 >More info	0.57 >More info	Uninduced			Original data	GEO bulk
121	Shoot apex inflorescence (after bolting)	0.01 >More info	0.65 >More info	Control for tissue data			Original data	Developmental series; organs / tissues at different ages
122	Heat Recovery 24 h (root)	-0.60 >More info	-0.06 >More info	Stress mock 24 h (root)			Original data	Stress treatments
123	Seedling KUA1-IOX est	0.56 >More info	0.09 >More info	Seedling KUA1-IOX mock			Original data
124	siliques WT hypoxia	0.64 >More info	0.01 >More info	siliques WT control	hypoxia	silique	Original data	GEO bulk
125	mtf1-1	0.53 >More info	0.12 >More info	Col0		root	Original data
126	elevated CO2 high Mg root	-0.51 >More info	-0.14 >More info	atmospheric CO2 high Mg root		Root	Original data
127	Heat shock optimum	-0.00 >More info	0.65 >More info	Heat shock baseline	Photosynthesis at optimum temperature	leaf first fully expanded	Original data	GEO bulk
128	seedlings protease IV	0.51 >More info	0.13 >More info	seedlings nontreated control		whole seedling	Original data
129	Red/FR Light 4 h	-0.13 >More info	-0.51 >More info	FarRed Light 4 h			Original data	Light treatments
130	TiO2 germinant	-0.53 >More info	-0.10 >More info	Millipore Water germinant	TiO2	seedling	Original data
131	mutant-line409	0.54 >More info	0.09 >More info	WT-control		whole plant	Original data	GEO bulk
132	Col0 roots 2hr KNO3 nitrogen	-0.50 >More info	-0.13 >More info	Col0 roots 2hr KCl control		root	Original data	GEO bulk
133	Laer pretreat GA Flg22 1h	-0.08 >More info	0.71 >More info	Laer pretreat water control		leaf discs	Original data	GEO bulk
134	ga1-3/brm-1	0.54 >More info	0.08 >More info	wt		shoots	Original data	GEO bulk
135	Mutant arf2-6 (IAA)	-0.58 >More info	-0.04 >More info	Col (IAA)			Original data	GEO bulk
136	IAA7mII over-expressor IAA Treated	-0.07 >More info	0.69 >More info	empty vector IAA Treated			Original data	GEO bulk
137	250uM K-nitrate 20min roots	-0.56 >More info	-0.05 >More info	250uM KCl 20min roots		Roots	Original data	GEO bulk
138	opr3 OPDA 8 h	-0.08 >More info	-0.53 >More info	opr3 0 h			Original data	GEO bulk
139	cngc19	0.56 >More info	0.04 >More info	Col-0		root	Original data	GEO bulk
140	CCA1-ox 6am non-polysomal	0.09 >More info	0.51 >More info	WT 6am non-polysomal		aerial part	Original data
141	WT cold 24h	-0.51 >More info	-0.07 >More info	WT cold 0h	cold at 4°C	seedlings	Original data	GEO bulk
142	KCl germinant	-0.55 >More info	-0.03 >More info	Millipore Water germinant	KCl	seedling	Original data
143	24h +Pi	-0.55 >More info	-0.03 >More info	24h -Pi		root	Original data	GEO bulk
144	WT drought	0.04 >More info	0.54 >More info	WT control		All aerial tissue	Original data	GEO bulk
145	Col-0 ozone- (control genotype tga2 tag5 tga6)	0.58 >More info	-0.00 >More info	Col-0 ctrl (control genotype tga2 tag5 tga6)	350 ppb ozone exposure for 2hr		Original data
146	1.5 hr nitrate	0.55 >More info	0.02 >More info	immediately prior to nitrogen addtion		roots from hydroponically grown plants	Original data	GEO bulk
147	ex1 flu dark 8hours/30 minute light	0.02 >More info	0.55 >More info	col dark 8hours/30 minute light			Original data	GEO bulk
148	erf5 erf6	0.50 >More info	0.06 >More info	WT+water	water	seedlings	Original data	GEO bulk
149	Dark	0.56 >More info	-0.00 >More info	Control			Original data	GEO bulk
150	P.p 10.5hai	0.54 >More info	0.01 >More info	At-Control		roots	Original data	GEO bulk
151	ein2-1 9 hpi A. brassicicola	0.52 >More info	0.03 >More info	Col-0 9 hpi mock		3rd-5th true leaves	Original data
152	sfr6 drought	-0.00 >More info	-0.55 >More info	WT drought		All aerial tissue	Original data	GEO bulk
153	Mutant ga1-5	0.53 >More info	0.01 >More info	Ler-1			Original data	Comparison of plant hormone related mutant
154	ubc13A-es	-0.53 >More info	0.02 >More info	Col-es		root	Original data	GEO bulk
155	myb50 xylem	0.52 >More info	-0.02 >More info	wt xylem		xylem	Original data	GEO bulk
156	9m.KNO3	-0.54 >More info	0.04 >More info	To.	KNO3	14 day old Roots	Original data	GEO bulk
157	12h-DC3000 avrRpm1	0.05 >More info	-0.55 >More info	12h-DC3000		leaves	Original data	GEO bulk
158	SLWF infested	0.58 >More info	-0.08 >More info	SLWF uninfested		rosette tissue	Original data	GEO bulk
159	cngc1-3	0.55 >More info	-0.06 >More info	Col-0		root	Original data	GEO bulk
160	dsr1	-0.53 >More info	0.04 >More info	WT mock		Whole seedling	Original data	GEO bulk
161	Total RNA 35S:AtCSP1-FH1 cold	0.04 >More info	-0.53 >More info	Total RNA csp1 cold	12h cold (4C)	rosettes	Original data	GEO bulk
162	WT 3H Cold	-0.15 >More info	0.62 >More info	WT control			Original data	GEO bulk
163	Callus	0.54 >More info	-0.08 >More info	Control for tissue data		callus	Original data	GEO bulk
164	Whole root - low pH 48H	0.13 >More info	-0.52 >More info	Whole root - Std pH 48H	pH 4.6 for 48 hr		Original data	GEO bulk
165	vte2 leaves 0h LT	-0.18 >More info	0.57 >More info	Col leaves 0h LT	h	9-11th adult leaves	Original data
166	Prohexadione 12 h	-0.18 >More info	0.53 >More info	Mock 12 h			Original data	Effect of GA inhibitors on seedlings
167	iron minus 24h	-0.52 >More info	0.18 >More info	iron +24h		root	Original data	GEO bulk
168	ACN1-2 Sucrose	-0.63 >More info	0.30 >More info	Col-7 Sucrose			Original data	GEO bulk
169	4C 1h	-0.27 >More info	0.58 >More info	4C 0h			Original data	GEO bulk
170	iron minus 6 h	-0.56 >More info	0.27 >More info	iron +6 h		root	Original data	GEO bulk