4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root - 01% oxygen - 2h
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List of experiments correlated with "root - 01% oxygen - 2h"  Help Download transcriptome of top 30
Score Experiment Correlation from
root - 01% oxygen - 2h		 Correlation to
root - 01% oxygen - 2h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root - 01% oxygen - 2h 1.00 >More info 1.00 >More info root - 21% oxygen - 2h Original data GEO bulk
2 root - 04% oxygen - 2h 0.89 >More info 0.90 >More info root - 21% oxygen - 2h Original data GEO bulk
3 WT Root Hypoxia 0.87 >More info 0.90 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
4 root - 08% oxygen - 2h 0.87 >More info 0.89 >More info root - 21% oxygen - 2h Original data GEO bulk
5 root hypoxia total 0.90 >More info 0.82 >More info root control total Original data GEO bulk
6 Col-0 wt Hypoxic 0.84 >More info 0.86 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
7 root - 04% oxygen - 48h 0.82 >More info 0.88 >More info root - 21% oxygen - 48h Original data GEO bulk
8 roottip hypoxia total 0.88 >More info 0.76 >More info roottip control total Original data GEO bulk
9 WT Shoot Hypoxia 0.84 >More info 0.79 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
10 shoot hypoxia total 0.84 >More info 0.78 >More info shoot control total Original data GEO bulk
11 Col-0 2HS 0.86 >More info 0.75 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
12 2 hr Hypoxia Total RNA 0.85 >More info 0.73 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
13 root - 04% oxygen - 30min 0.80 >More info 0.78 >More info root - 21% oxygen - 30min Original data GEO bulk
14 MPK6 ox Root Hypoxia 0.89 >More info 0.67 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
15 root - 01% oxygen - 30min 0.80 >More info 0.74 >More info root - 21% oxygen - 30min Original data GEO bulk
16 MPK6 ox Shoot Hypoxia 0.86 >More info 0.67 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
17 Col upon hypoxia 6 hrs 0.84 >More info 0.67 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
18 root - 01% oxygen - 48h 0.83 >More info 0.67 >More info root - 21% oxygen - 48h Original data GEO bulk
19 Aerobic e1 ate2 0.69 >More info 0.78 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
20 root - 08% oxygen - 30min 0.69 >More info 0.74 >More info root - 21% oxygen - 30min Original data GEO bulk
21 2 hr Hypoxia IP RNA 0.82 >More info 0.59 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
22 ACN1-2 Sucrose -0.71 >More info -0.69 >More info Col-7 Sucrose Original data GEO bulk
23 Col-0 low oxygen 0.84 >More info 0.56 >More info Col-0 control low oxygen root Original data GEO bulk
24 Heat Recovery 24 h (root) -0.80 >More info -0.58 >More info Stress mock 24 h (root) Original data Stress treatments
25 Root submergence 24h 0.80 >More info 0.56 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
26 CeO2 germinant -0.80 >More info -0.56 >More info Millipore Water germinant CeO2 seedling Original data
27 estradiole-induced ANAC059 -0.70 >More info -0.66 >More info transgenic (empty vector inducible system) Original data GEO bulk
28 9 hr Hypoxia Total RNA 0.85 >More info 0.51 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
29 0.2µM SMX -0.76 >More info -0.58 >More info control Whole seedling Original data GEO bulk
30 Root submergence 7h 0.77 >More info 0.57 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
31 35S:PCO1 hypoxia -0.66 >More info -0.64 >More info WT hypoxia whole rosette Original data
32 1.5 hr ammonium 0.82 >More info 0.48 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
33 oas-a1.1 root -0.67 >More info -0.62 >More info WT-Untreated Root Original data GEO bulk
34 OE-HRA1 2HS  -0.70 >More info -0.57 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
35 9 hr Hypoxia IP RNA 0.84 >More info 0.42 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
36 P.p 6hai 0.82 >More info 0.43 >More info At-Control roots Original data GEO bulk
37 Aerobic prt6 0.64 >More info 0.60 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
38 Cs root -0.79 >More info -0.45 >More info control root Original data GEO bulk
39 Tsu-1 -Fe 48h 0.84 >More info 0.38 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
40 Tsu -Fe 48h Roots 0.84 >More info 0.38 >More info Tsu +Fe 24h Roots Original data GEO bulk
41 R. amphibia submerged 0.69 >More info 0.52 >More info R. amphibia air Original data GEO bulk
42 R. sylvestris submerged 0.66 >More info 0.54 >More info R. sylvestris air Original data GEO bulk
43 FHY3p dark+DEX -0.75 >More info -0.45 >More info FHY3p dark+mock Original data GEO bulk
44 20m.KCl -0.55 >More info -0.63 >More info To. KCl 14 day old Roots Original data GEO bulk
45 cngc4 0.68 >More info 0.50 >More info Ws-2 Seedlings Original data GEO bulk
46 Tsu -Fe 24h Roots 0.79 >More info 0.39 >More info Tsu +Fe 24h Roots Original data GEO bulk
47 Tsu-1 -Fe 24h 0.79 >More info 0.39 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
48 Pseudomonas 0.72 >More info 0.46 >More info Control pseudomonas treated whole seedling Original data GEO bulk
49 root - 08% oxygen - 48h 0.49 >More info 0.69 >More info root - 21% oxygen - 48h Original data GEO bulk
50 vte1-1 3d vernalization -0.68 >More info -0.49 >More info WT 3d vernalization Original data GEO bulk
51 P.p 10.5hai 0.78 >More info 0.38 >More info At-Control roots Original data GEO bulk
52 P.p 2.5hai 0.83 >More info 0.33 >More info At-Control roots Original data GEO bulk
53 TNT-seedlings 0.59 >More info 0.57 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
54 ani1 T16 -0.71 >More info -0.43 >More info WT T16 root tissue Original data GEO bulk
55 prt6-1 0.69 >More info 0.44 >More info Col-0 imbibed for 24 h Pre-germinated seeds Original data GEO bulk
56 spx1 spx2 complete -0.76 >More info -0.35 >More info WT complete seedlings Original data
57 9 hr Hypoxia 1 hr recovery Total RNA 0.80 >More info 0.30 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
58 8 hr ammonium 0.75 >More info 0.34 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
59 Col BTH 0.42 >More info 0.67 >More info Col rosettes Original data GEO bulk
60 bri1-116 0.36 >More info 0.73 >More info Col seedling Original data GEO bulk
61 pepr1-1 Pepr2-3 untreated 0.61 >More info 0.47 >More info WT untreated untreated Original data GEO bulk
62 F1 hybrid submerged 0.54 >More info 0.52 >More info F1 hybrid air Original data GEO bulk
63 afb3-1 2h KCl -0.72 >More info -0.33 >More info Ws 2h KCl 2 hours of 5 mM KCl Arabidopsis root Original data GEO bulk
64 Anoxia 0.70 >More info 0.34 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
65 amiRAP hypoxic -0.66 >More info -0.37 >More info hypoxic hypoxia Original data GEO bulk
66 35S::HRE1 Hypoxic 0.61 >More info 0.41 >More info Col-0 wt Hypoxic hypoxic treatment Original data GEO bulk
67 ckh2 CK25 0.70 >More info 0.32 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
68 Col-0 V. longisporum-inoculated 48 hpi 0.55 >More info 0.47 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
69 9 hr Hypoxia 1 hr recovery IP RNA 0.74 >More info 0.28 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
70 C58 3hpi 0.56 >More info 0.46 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
71 ckh2 CK0 0.73 >More info 0.28 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
72 mdh -0.81 >More info -0.19 >More info Col Original data GEO bulk
73 WT hypoxia 0.61 >More info 0.39 >More info WT normoxia whole rosette Original data
74 seed germinating in countinuous light 24h SL 0.33 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
75 Light 0.75 >More info 0.23 >More info Control Original data GEO bulk
76 estradiole-induced ANAC092 -0.68 >More info -0.30 >More info transgenic (empty vector inducible system) Original data GEO bulk
77 whole roots -Fe 72 hour 0.65 >More info 0.32 >More info whole roots standard Original data GEO bulk
78 Fe starvation 72 h 0.65 >More info 0.32 >More info Control Original data GEO bulk
79 seedling 1.5h after HZE WT 0.53 >More info 0.42 >More info seedling day 1 unirradiated WT 1.5h Original data
80 ANOXIA 0.59 >More info 0.36 >More info ANOXIA+SUCROSE Original data GEO bulk
81 elevated CO2 normal Mg root -0.61 >More info -0.33 >More info atmospheric CO2 normal Mg root Root Original data
82 mtf1-1 0.61 >More info 0.33 >More info Col0 root Original data
83 ptpks2 -0.34 >More info -0.60 >More info Col-WT leaves Original data GEO bulk
84 Mutant ga1-5 0.68 >More info 0.25 >More info Ler-1 Original data Comparison of plant hormone related mutant
85 seedlings + TSA 0.72 >More info 0.21 >More info control seedlings 10-day old whole seedling Original data GEO bulk
86 siliques AtHb1 control 0.41 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
87 1 h Light Total RNA -0.42 >More info -0.51 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
88 Col-0 WT HL 3h -0.50 >More info -0.42 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
89 elevated CO2 low Mg root -0.71 >More info -0.21 >More info atmospheric CO2 low Mg root Root Original data
90 mutant-line409 0.67 >More info 0.24 >More info WT-control whole plant Original data GEO bulk
91 whole roots -Fe 48 hour 0.62 >More info 0.29 >More info whole roots standard Original data GEO bulk
92 Heat shock optimum 0.25 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
93 ACN1-2 -0.22 >More info -0.68 >More info col-7 Original data GEO bulk
94 gun1gun5 Norflurazon 0.60 >More info 0.30 >More info Norflurazon a herbicide (Norflurazon) seedling Original data GEO bulk
95 elevated CO2 high Mg root -0.69 >More info -0.20 >More info atmospheric CO2 high Mg root Root Original data
96 ago4-1 0.60 >More info 0.29 >More info WT La-er whole plants Original data GEO bulk
97 hypoxic 0.71 >More info 0.18 >More info WT aerobic hypoxia Original data GEO bulk
98 Col-0 low oxygen 0.77 >More info 0.11 >More info Col-0 Original data GEO bulk
99 P.p 30hai 0.66 >More info 0.22 >More info At-Control roots Original data GEO bulk
100 root callus inducing medium 12 h -0.65 >More info -0.22 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
101 Shoot apex inflorescence (after bolting) 0.22 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
102 P35S:rGRF3 0.56 >More info 0.30 >More info WS Original data GEO bulk
103 Root dark control 24h 0.33 >More info 0.53 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
104 ckh1 CK0 0.64 >More info 0.22 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
105 4d red light grown hmr-5 seedlings 0.50 >More info 0.36 >More info 4d red light grown WT(Col-0) seedlings Original data
106 ein2 mutant roots mock -0.60 >More info -0.26 >More info roots mock Original data GEO bulk
107 1.5 hr nitrate 0.67 >More info 0.18 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
108 seedlings-week-old RECA1-overexpressing
transgenic		 0.56 >More info 0.29 >More info seedlings-week-old Col-0 seedlings Original data
109 bak1-3 untreated 0.63 >More info 0.21 >More info WT untreated untreated Original data GEO bulk
110 gun4-1 0.58 >More info 0.26 >More info WT Col-0 seedling Original data GEO bulk
111 TA induced 0.61 >More info 0.23 >More info Methanol TA Suspension cells Original data GEO bulk
112 vtc2 mature somatic embryo 0.59 >More info 0.25 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
113 Seedling-HeatStressed TOTALmRNA 0.55 >More info 0.28 >More info Seedling-control TOTALmRNA seedling Original data
114 root longitudinal zone-1 -Fe 0.14 >More info 0.69 >More info root longitudinal zone-1 standard Original data GEO bulk
115 mbd4 mutant thaliana 10-day-old seedling 0.65 >More info 0.17 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
116 Col0-PsmES4326-24hpi 0.21 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
117 Stem tissue 5 days NAA 0.68 >More info 0.13 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
118 Mutant bri1 0.54 >More info 0.27 >More info Ws-2 Original data Comparison of plant hormone related mutant
119 10min Reillumination IP RNA 0.21 >More info 0.60 >More info 1h Dark IP RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
120 2hr transitory KNO3 PrR cell 0.24 >More info 0.57 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
121 Nuclear GSH1 -0.61 >More info -0.19 >More info Cytoplasmic GSH1 Control Original data GEO bulk
122 ddm1 mutant seedlings -0.65 >More info -0.15 >More info control seedlings 10-day old whole seedling Original data GEO bulk
123 S5 -0.17 >More info -0.63 >More info WT Original data GEO bulk
124 root cells epidermis 140mM NaCl 48 hours 0.57 >More info 0.23 >More info root cells epidermis standard 1 hour root cells epidermis Original data
125 GV3101 6dpi 0.57 >More info 0.23 >More info Reference 6dpi wounded inflorescence stalk segments Original data GEO bulk
126 Seedling-HeatStressed POLYSOMESmRNA 0.53 >More info 0.26 >More info Seedling-control POLYSOMESmRNA seedling Original data
127 IAA 2h 0.50 >More info 0.29 >More info control 2h root Original data GEO bulk
128 xyl-grown cell culture- 1h 1mM Suc 0.11 >More info 0.68 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
129 siliques WT hypoxia 0.76 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
130 root cells cortex 140mM NaCl 48 hours 0.55 >More info 0.22 >More info root cells cortex standard 1 hour root cells cortex Original data
131 tumour 0.64 >More info 0.13 >More info non-tumor tumour Original data GEO bulk
132 per1 in Pi deficiency medium 0.60 >More info 0.17 >More info Col in Pi deficiency medium root Original data GEO bulk
133 PRR5-VP 6h light on -0.54 >More info -0.23 >More info WT 6h light on whole plant Original data GEO bulk
134 ckh1 CK25 0.62 >More info 0.15 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
135 Root dark control 7h 0.20 >More info 0.57 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
136 DMTU 0.55 >More info 0.21 >More info control Original data GEO bulk
137 hexa mutant (higher order mutant) 0.54 >More info 0.22 >More info col control (higher order mutant) Original data GEO bulk
138 root cells epidermis 140mM NaCl 20 hours 0.60 >More info 0.16 >More info root cells epidermis standard 1 hour root cells epidermis Original data
139 DFPM 0.58 >More info 0.18 >More info control Original data GEO bulk
140 P-chlorophenoxy- isobutyric acid 3 h -0.51 >More info -0.25 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
141 shoot control p35S 0.18 >More info 0.58 >More info shoot control total Original data GEO bulk
142 Genotoxic Stress 3 h (root) -0.65 >More info -0.10 >More info Stress mock 3 h (root) Original data Stress treatments
143 nd-1 mock 48 hpi 0.51 >More info 0.24 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
144 Selenate (root) 0.55 >More info 0.20 >More info Ws (root) Original data GEO bulk
145 Root Selenate 0.55 >More info 0.20 >More info Root control 40 micromolar selenate Root Original data GEO bulk
146 WT (Ler) CK200 0.54 >More info 0.21 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
147 15m.KCl 0.58 >More info 0.17 >More info To. KCl 14 day old Roots Original data GEO bulk
148 RRE2 Chitin 0.72 >More info 0.02 >More info Chitin Original data GEO bulk
149 arr-BA-sample 0.57 >More info 0.17 >More info Wt-BA-sample seedling Original data
150 oas-a1.1 Cd 18h 0.54 >More info 0.20 >More info Cd 18h root Root Original data GEO bulk
151 root cells cortex 140mM NaCl 20 hours 0.57 >More info 0.17 >More info root cells cortex standard 1 hour root cells cortex Original data
152 WT resupplied Pi 4h -0.54 >More info -0.20 >More info WT complete seedlings Original data
153 seuss-3 -0.52 >More info -0.22 >More info Col-0 Original data GEO bulk
154 E.orontii Infection 3 day 0.20 >More info 0.54 >More info Uninfection 3 day Original data Elicitor treatments
155 seedlings +5AC 0.68 >More info 0.05 >More info control seedlings 10-day old whole seedling Original data GEO bulk
156 SCR-GR Time 12H Dex 0.59 >More info 0.14 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
157 9m.KNO3 -0.62 >More info -0.11 >More info To. KNO3 14 day old Roots Original data GEO bulk
158 ARR22-ox (t-zeatin 3 h) 0.51 >More info 0.22 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
159 wavy 0.55 >More info 0.17 >More info WT Original data GEO bulk
160 WT seedlings MV 0.60 >More info 0.12 >More info WT seedlings control Seedlings Original data GEO bulk
161 HARAP aerobic 0.51 >More info 0.21 >More info WT aerobic aerobic Original data GEO bulk
162 ubc13A-es -0.60 >More info -0.12 >More info Col-es root Original data GEO bulk
163 2hr continuous KNO3 ECR cell -0.09 >More info -0.63 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
164 Mutant axr3-1 0.51 >More info 0.20 >More info Col Original data GEO bulk
165 IAA/inhibitor A Treated 0.67 >More info 0.03 >More info IAA Treated Original data GEO bulk
166 ALC Toc1 light-light Mock -0.56 >More info -0.14 >More info Col light-light Mock no ethanol Original data GEO bulk
167 protoplasted roots pH4.6 0.56 >More info 0.14 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
168 CBF3 0mM NaCl 0.51 >More info 0.19 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
169 T101D 10mM NH4NO3 -0.19 >More info -0.51 >More info col 10mM NH4NO3 Root Original data
170 etr1 1% sucrose 12-day-old 0.68 >More info 0.01 >More info Col-0 1% sucrose 12-day-old Original data GEO bulk
171 250uM K-nitrate 20min roots -0.55 >More info -0.14 >More info 250uM KCl 20min roots Roots Original data GEO bulk
172 gabaculin 0.54 >More info 0.15 >More info WT Col-0 seedling Original data GEO bulk
173 rcf1-1 cold 0h 0.55 >More info 0.14 >More info WT cold 0h Control seedlings Original data GEO bulk
174 ahg2-1abi1-1 0.61 >More info 0.08 >More info WT (Col) control Original data GEO bulk
175 mp-B4149 mutant IAA 0.60 >More info 0.09 >More info GR-bdl IAA Original data GEO bulk
176 max4 hypocotyl 0.56 >More info 0.12 >More info wt hypocotyl hypocotyl Original data GEO bulk
177 PRR5-VP 12h light on -0.54 >More info -0.14 >More info WT 12h light on whole plant Original data GEO bulk
178 myb50 xylem 0.54 >More info 0.14 >More info wt xylem xylem Original data GEO bulk
179 cngc1 -0.50 >More info -0.18 >More info Ws-2 Seedlings Original data GEO bulk
180 R. solani AG8 0.57 >More info 0.11 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
181 WT roots - Fe 0.07 >More info 0.61 >More info WT roots + Fe Roots Original data GEO bulk
182 9m.KCl 0.65 >More info 0.02 >More info To. KCl 14 day old Roots Original data GEO bulk
183 seedling mSPL13 0.55 >More info 0.12 >More info seedling Col-0 Original data GEO bulk
184 gai Control 0.57 >More info 0.10 >More info Laer Control leaf discs Original data GEO bulk
185 mutant-line348 0.55 >More info 0.11 >More info WT-control whole plant Original data GEO bulk
186 Leafminer damaged seedlings 0.10 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
187 mbd6 mutant thaliana 10-day-old seedling 0.60 >More info 0.06 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
188 cys-c1 root 0.54 >More info 0.11 >More info Root-WT roots Original data GEO bulk
189 RRE1 Chitin 0.60 >More info 0.05 >More info Chitin Original data GEO bulk
190 shoots bhlh100/101 0uM Fe 0.52 >More info 0.13 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
191 iron minus 6 h -0.78 >More info 0.13 >More info iron +6 h root Original data GEO bulk
192 msg2-BR 0.60 >More info 0.05 >More info BR BR dark-grown seedlings Original data GEO bulk
193 clf-28 swn-7 0.54 >More info 0.11 >More info Col whole plant Original data GEO bulk
194 C58 35dpi 0.66 >More info -0.02 >More info Reference 35dpi wounded inflorescence stalk segments Original data GEO bulk
195 GR-REV 60min 0.52 >More info 0.12 >More info Col 60min Original data GEO bulk
196 npr1-1 SA -0.59 >More info -0.04 >More info Col-0 SA complete seedling Original data
197 root cells cortex 140mM NaCl 3 hours 0.52 >More info 0.11 >More info root cells cortex standard 1 hour root cells cortex Original data
198 Prohexadione 3 h -0.61 >More info -0.02 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
199 IRP1-OE-Fe--root -0.69 >More info 0.06 >More info COL-0-Fe--root root Original data
200 GA3 1 h (ga1) 0.59 >More info 0.03 >More info Mock 1 h (ga1) Original data Basic hormone treatment of seedlings
201 HSP90 Reduced RNAi-C1 0.52 >More info 0.10 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
202 Hypoxic prt6 0.51 >More info 0.11 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
203 Ws seedlings -0.63 >More info 0.01 >More info ged1 seedlings Original data GEO bulk
204 ged1 seedlings 0.63 >More info -0.01 >More info Ws seedlings Original data GEO bulk
205 Red Light 4 h 0.10 >More info 0.52 >More info White Light 4 h Original data Light treatments
206 root cells cortex 140mM NaCl 8 hours 0.55 >More info 0.06 >More info root cells cortex standard 1 hour root cells cortex Original data
207 ABA 1 h -0.07 >More info -0.54 >More info Mock 1 h Original data Basic hormone treatment of seedlings
208 sex1-3 0.06 >More info 0.55 >More info Col-WT leaves Original data GEO bulk
209 brat1nrpe1 0.11 >More info 0.50 >More info WT Original data
210 pnp1-1 1wk +P 0.53 >More info 0.07 >More info WT 1wk +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
211 dsr1 -0.55 >More info -0.05 >More info WT mock Whole seedling Original data GEO bulk
212 pnp1-1 1wk -P 0.58 >More info 0.02 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
213 Whole root - S 3H -0.03 >More info -0.56 >More info Whole root - S 0H Original data GEO bulk
214 Laer pretreat GA Flg22 1h -0.12 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
215 mbd11 mutant thaliana 10-day-old seedling 0.50 >More info 0.08 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
216 AVG 3 h -0.50 >More info -0.08 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
217 root cells endodermis 140mM NaCl 3 hours 0.55 >More info 0.02 >More info root cells endodermis standard 1 hour root cells endodermis Original data
218 root cells cortex 140mM NaCl 32 hours 0.51 >More info 0.06 >More info root cells cortex standard 1 hour root cells cortex Original data
219 axr2-BR 0.56 >More info 0.01 >More info BR BR dark-grown seedlings Original data GEO bulk
220 CCA1-ox 6am non-polysomal 0.06 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
221 Truncated AC2 T1 -0.61 >More info 0.04 >More info AC2 and AC2del control T1 one day post infusion with Agrobacterium containing a truncated version of CaLCuV AC2 Arabidopsis rosette leaves Original data
222 Cambium 5 days NAA 0.62 >More info -0.05 >More info Stem tissue T0 Interfascicular cambium induced after 5 days NAA in vitro treatment laser capture microdissection Original data GEO bulk
223 shoots bhlh100/101 100uM Fe 0.58 >More info -0.01 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
224 per1 in control medium 0.56 >More info 0.00 >More info Col in control medium root Original data GEO bulk
225 root cells epidermis 140mM NaCl 8 hours 0.50 >More info 0.05 >More info root cells epidermis standard 1 hour root cells epidermis Original data
226 Col0 roots 2hr KNO3 nitrogen -0.55 >More info 0.00 >More info Col0 roots 2hr KCl control root Original data GEO bulk
227 tga1 tga4 2h KCl 0.04 >More info 0.51 >More info Col 0 2h KCl 5 mM KCl root Original data GEO bulk
228 Wounding Stress3 h (root) -0.59 >More info 0.04 >More info Stress mock 3 h (root) Original data Stress treatments
229 hira-root -0.60 >More info 0.05 >More info WT-root root Original data
230 Callus 0.55 >More info -0.01 >More info Control for tissue data callus Original data GEO bulk
231 E2Fa-Dpa 0.52 >More info 0.02 >More info WT Original data GEO bulk
232 IAA7mII over-expressor mock -0.53 >More info 0.00 >More info empty vector mock Original data GEO bulk
233 Sha-3h IAA -0.59 >More info 0.06 >More info Sha-0h IAA whole plant Original data GEO bulk
234 seedling 3h after HZE WT 0.51 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
235 Mutant cry1 -0.69 >More info 0.16 >More info Col-0 Original data GEO bulk
236 cry1 low light -0.69 >More info 0.16 >More info Col-O low light Original data GEO bulk
237 E.orontii Infection 6 h -0.05 >More info 0.58 >More info Uninfection 6 h Original data Elicitor treatments
238 Shoot submergence 7h 0.52 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
239 inhibitor B Treated 0.52 >More info 0.00 >More info Negative Control Original data GEO bulk
240 Red/FR Light45min -0.01 >More info -0.51 >More info FarRed Light 45min Original data Light treatments
241 phr1 Root-Pi -0.53 >More info 0.02 >More info WT Root+Pi roots Original data GEO bulk
242 root cells endodermis 140mM NaCl 8 hours 0.55 >More info -0.04 >More info root cells endodermis standard 1 hour root cells endodermis Original data
243 Dark 0.60 >More info -0.10 >More info Control Original data GEO bulk
244 Brassinolide 0.5 h (det2) 0.55 >More info -0.05 >More info Mock 0.5 h (det2) Original data Basic hormone treatment of seedlings
245 csn5 (csn5a-2 csn5b) light 0.54 >More info -0.05 >More info WT light Original data GEO bulk
246 UV Stress 24 h (root) -0.59 >More info 0.10 >More info Stress mock 24 h (root) Original data Stress treatments
247 Sha-1h IAA -0.55 >More info 0.07 >More info Sha-0h IAA whole plant Original data GEO bulk
248 24h +Pi -0.70 >More info 0.22 >More info 24h -Pi root Original data GEO bulk
249 empty vector IAA Treated -0.50 >More info 0.02 >More info empty vector mock Original data GEO bulk
250 IAA7mII over-expressor IAA Treated -0.22 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
251 FarRed Light 45min -0.11 >More info 0.57 >More info White Light 45min Original data Light treatments
252 Imbibed 3 h (seed) 0.52 >More info -0.07 >More info Dry seed Original data Time course of early seed germination
253 Col in Pi deficiency medium 0.57 >More info -0.12 >More info Col in control medium root Original data GEO bulk
254 SCL3 OE -0.61 >More info 0.17 >More info Col-0 whole root Original data GEO bulk
255 4d red light grown hmr-22 seedlings 0.64 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
256 IAA 24h 0.50 >More info -0.07 >More info control 24h root Original data GEO bulk
257 Mutant iaa5_6_19(IAA) 0.60 >More info -0.17 >More info Col (IAA) Original data GEO bulk
258 Bay-0-3h IAA -0.50 >More info 0.08 >More info Bay-0-0h IAA whole plant Original data GEO bulk
259 SA 24h -0.11 >More info 0.51 >More info EtOH 24h 24hr Original data GEO bulk
260 gun5 control 0.59 >More info -0.21 >More info Col-0 control Original data GEO bulk
261 PNO8 12 h -0.56 >More info 0.19 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
262 Seedling KUA1-IOX est 0.58 >More info -0.21 >More info Seedling KUA1-IOX mock Original data
263 det2 light-dark -0.51 >More info 0.14 >More info det2 light light-dark Original data GEO bulk
264 Cs shoot -0.53 >More info 0.23 >More info control shoot Original data GEO bulk
265 axr2 0.52 >More info -0.22 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
266 long 17-degree- 0.30 >More info -0.58 >More info control long Original data GEO bulk
267 iron minus 24h -0.70 >More info 0.50 >More info iron +24h root Original data GEO bulk
268 myb3 myb3r4d -0.53 >More info 0.42 >More info Wild type Col0-9d whole seedlings Original data GEO bulk