4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Root dark control 7h
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List of experiments correlated with "Root dark control 7h"  Help Download transcriptome of top 30
Score Experiment Correlation from
Root dark control 7h		 Correlation to
Root dark control 7h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Root dark control 7h 1.00 >More info 1.00 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
2 Root submergence 7h 0.95 >More info 0.93 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
3 Root dark control 24h 0.93 >More info 0.91 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
4 Root submergence 24h 0.91 >More info 0.88 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
5 WT (Col) glucose -0.72 >More info -0.78 >More info WT (Col) glucose seedlings Original data GEO bulk
6 cngc4 0.71 >More info 0.79 >More info Ws-2 Seedlings Original data GEO bulk
7 seedling 1.5h after HZE atm-1 0.74 >More info 0.74 >More info seedling day 1 unirradiated atm-1 1.5h Original data
8 roots bhlh100/101 0uM Fe 0.74 >More info 0.72 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
9 Shoot dark control 7h 0.69 >More info 0.70 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
10 spch 0.71 >More info 0.67 >More info Col-0 WT whole seedling Original data GEO bulk
11 vte1-1 3d vernalization -0.70 >More info -0.64 >More info WT 3d vernalization Original data GEO bulk
12 4d red light grown hmr-5 seedlings 0.71 >More info 0.62 >More info 4d red light grown WT(Col-0) seedlings Original data
13 Col-0 low oxygen 0.68 >More info 0.64 >More info Col-0 control low oxygen root Original data GEO bulk
14 Shoot dark control 24h 0.65 >More info 0.67 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
15 seedling 1.5h after HZE WT 0.74 >More info 0.57 >More info seedling day 1 unirradiated WT 1.5h Original data
16 sex1-3 0.57 >More info 0.72 >More info Col-WT leaves Original data GEO bulk
17 Pseudomonas 0.63 >More info 0.66 >More info Control pseudomonas treated whole seedling Original data GEO bulk
18 Shoot submergence 24h 0.65 >More info 0.63 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
19 Cd 18h root -0.54 >More info -0.72 >More info WT-Untreated Root Original data GEO bulk
20 phr1 Shoot-Pi 0.63 >More info 0.63 >More info WT Root-Pi shoots Original data GEO bulk
21 Nicotinamide-73hr 0.66 >More info 0.60 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
22 toc1-1-73hr 0.53 >More info 0.72 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
23 oas-a1.1 root -0.48 >More info -0.77 >More info WT-Untreated Root Original data GEO bulk
24 low CO2 + light 0.59 >More info 0.65 >More info normal CO2 + light Original data GEO bulk
25 4h decapitation -0.54 >More info -0.70 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
26 toc1-1-53hr 0.52 >More info 0.72 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
27 low CO2 + dark 0.56 >More info 0.65 >More info normal CO2 + light Original data GEO bulk
28 max3GR24 (1 uM) -0.55 >More info -0.64 >More info max3 seedlings DMSO (mock) whole seedlings Original data GEO bulk
29 iron minus 0 h 0.67 >More info 0.52 >More info iron +0 h root Original data GEO bulk
30 detached inflorescences 24h 0.56 >More info 0.63 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
31 Nicotinamide-49hr 0.64 >More info 0.53 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
32 toc1-1-77hr 0.47 >More info 0.67 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
33 WT-16ºC -0.62 >More info -0.51 >More info WT-23ºC Original data GEO bulk
34 Day Time Treatment -0.53 >More info -0.58 >More info Day Time Control 1hr white light pulse aerial rosette Original data
35 gun1gun5 drak pretreated 0.49 >More info 0.62 >More info WT drak pretreated Original data GEO bulk
36 Dark 6h ivd 0.61 >More info 0.49 >More info 0h ivd Original data
37 root - 08% oxygen - 30min -0.50 >More info -0.58 >More info root - 21% oxygen - 30min Original data GEO bulk
38 gun5 norflurazon 0.54 >More info 0.53 >More info gun5 control Original data GEO bulk
39 WT 30μM arsenate 8 hours. 0.56 >More info 0.51 >More info WT control (not supplemented). Original data
40 ABA JA 24h 0.38 >More info 0.69 >More info EtOH 24h 24hr Original data GEO bulk
41 AgNO3 3 h 0.46 >More info 0.60 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
42 Nicotinamide-69hr 0.56 >More info 0.49 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
43 1 h Light Total RNA -0.51 >More info -0.54 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
44 Osmotic Stress 24 h (root) 0.54 >More info 0.51 >More info Stress mock 24 h (root) Original data Stress treatments
45 mil4 sid2 0.42 >More info 0.63 >More info Col rosettes Original data GEO bulk
46 camta1 root drought 0.55 >More info 0.49 >More info Col-0 root drought root Original data GEO bulk
47 RGA-GR-DEX 0.52 >More info 0.52 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
48 Night Time Treatment -0.49 >More info -0.55 >More info Night Time Control 1hr white light pulse aerial rosette Original data
49 Dark 3day hml 0.57 >More info 0.46 >More info 0h hml Original data
50 Col-0 C2H4 24h 0.54 >More info 0.49 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
51 F1 hybrid submerged 0.44 >More info 0.59 >More info F1 hybrid air Original data GEO bulk
52 TNT-seedlings 0.34 >More info 0.69 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
53 root Dosed gold 0.50 >More info 0.52 >More info root No gold .125 mM gold 24 h roots Original data
54 Dark 1day wt 0.59 >More info 0.43 >More info 0h wt Original data
55 8 hr ammonium 0.52 >More info 0.50 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
56 0.125 mM gold 24 h 0.50 >More info 0.52 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
57 T101D 10mM NH4NO3 -0.53 >More info -0.49 >More info col 10mM NH4NO3 Root Original data
58 Dark 1day hml 0.57 >More info 0.44 >More info 0h hml Original data
59 Dark 3day wt 0.55 >More info 0.46 >More info 0h wt Original data
60 9 hr Hypoxia Total RNA 0.58 >More info 0.43 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
61 camta1-2 0.52 >More info 0.49 >More info Col-0-WT Original data GEO bulk
62 oligomycin 1 h 0.50 >More info 0.51 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
63 Dark 6h wt 0.62 >More info 0.39 >More info 0h wt Original data
64 CeO2 germinant -0.33 >More info -0.68 >More info Millipore Water germinant CeO2 seedling Original data
65 Dark 1day ivd 0.57 >More info 0.43 >More info 0h ivd Original data
66 Nicotinamide-93hr 0.55 >More info 0.45 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
67 Dark 6h hml 0.63 >More info 0.37 >More info 0h hml Original data
68 6h +Pi -0.52 >More info -0.48 >More info 6h -Pi root Original data GEO bulk
69 oligomycin 4 h 0.53 >More info 0.46 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
70 ABA 3h -0.51 >More info -0.48 >More info EtOH 3h 3hr Original data GEO bulk
71 toc1-1-81hr 0.44 >More info 0.55 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
72 ANOXIA 0.47 >More info 0.52 >More info ANOXIA+SUCROSE Original data GEO bulk
73 MIL4 ox 0.45 >More info 0.54 >More info Col Original data GEO bulk
74 Nicotinamide-65hr 0.52 >More info 0.46 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
75 bri1-116 0.25 >More info 0.73 >More info Col seedling Original data GEO bulk
76 Cocultivation 8 hrs leaf 0.59 >More info 0.38 >More info Mock cocultivation 8 hrs leaf Leaf Original data
77 sfr6 control -0.58 >More info -0.39 >More info WT control All aerial tissue Original data GEO bulk
78 pip3 At2g19270 TDNA 9 0.44 >More info 0.53 >More info Col-0 whole plant Original data GEO bulk
79 Col BTH 0.30 >More info 0.67 >More info Col rosettes Original data GEO bulk
80 Var2-1 roots 2hr KNO3 nitrogen 0.45 >More info 0.52 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
81 root cells epidermis 140mM NaCl 48 hours 0.47 >More info 0.50 >More info root cells epidermis standard 1 hour root cells epidermis Original data
82 root cells cortex 140mM NaCl 1 hour 0.51 >More info 0.45 >More info root cells cortex standard 1 hour root cells cortex Original data
83 tmm1-inflorescence-tips -0.38 >More info -0.58 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
84 Nicotinamide-57hr 0.42 >More info 0.54 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
85 SA 0.43 >More info 0.53 >More info WT mock Whole seedling Original data GEO bulk
86 pepr1-1 Pepr2-3 +Pep2 10h -0.46 >More info -0.50 >More info WT +Pep2 10h Pep2 Original data GEO bulk
87 ga1-3 scl3-1 -0.55 >More info -0.40 >More info ga1-3 whole root Original data
88 Dark 2day hml 0.56 >More info 0.39 >More info 0h hml Original data
89 3d old, both 10mM sucrose and 0.2µM SMX -0.52 >More info -0.43 >More info control Whole seedling Original data GEO bulk
90 Dark 3day ivd 0.53 >More info 0.41 >More info 0h ivd Original data
91 protoplasted roots pH4.6 0.50 >More info 0.44 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
92 COL-0-Fe--shoot -0.52 >More info -0.42 >More info COL-0-Ctrl--shoot shoot Original data
93 upb1-1 elongation zone -0.36 >More info -0.58 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
94 10mM sucrose -0.54 >More info -0.39 >More info control Whole seedling Original data GEO bulk
95 AmGSTF1 expressor 0.39 >More info 0.54 >More info WT leaf tissue Original data GEO bulk
96 P.p 6hai 0.61 >More info 0.32 >More info At-Control roots Original data GEO bulk
97 root cells endodermis 140mM NaCl 48 hours 0.50 >More info 0.43 >More info root cells endodermis standard 1 hour root cells endodermis Original data
98 0h light (+Lincomycin) -0.52 >More info -0.41 >More info 0h light (-Lincomycin) seedlings Original data GEO bulk
99 PNO8 12 h 0.42 >More info 0.51 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
100 R. sylvestris submerged 0.42 >More info 0.50 >More info R. sylvestris air Original data GEO bulk
101 E.orontii Infection 6 h 0.39 >More info 0.52 >More info Uninfection 6 h Original data Elicitor treatments
102 35S:VND7-VP16-GR+CHX -0.25 >More info -0.66 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
103 gun4-1 0.41 >More info 0.50 >More info WT Col-0 seedling Original data GEO bulk
104 elevated CO2 normal Mg root -0.52 >More info -0.38 >More info atmospheric CO2 normal Mg root Root Original data
105 Dark 2day wt 0.51 >More info 0.39 >More info 0h wt Original data
106 toc1-1-85hr 0.25 >More info 0.65 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
107 gai Flg22 2h 0.51 >More info 0.38 >More info Laer Flg22 2h leaf discs Original data GEO bulk
108 elf3-7-16ºC -0.51 >More info -0.38 >More info WT-16ºC Original data GEO bulk
109 Phytoprostane A1 4 h 0.39 >More info 0.50 >More info Col-0 Original data GEO bulk
110 high-R:FR bud axillary -0.37 >More info -0.52 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
111 seedling 24h after Gamma atm-1 -0.38 >More info -0.51 >More info seedling day 2 unirradiated atm-1 24h Original data
112 seedling 24h after Gamma WT -0.38 >More info -0.51 >More info seedling day 2 unirradiated WT 24h Original data
113 P.p 10.5hai 0.62 >More info 0.26 >More info At-Control roots Original data GEO bulk
114 MYB12OX/tt4 0.50 >More info 0.38 >More info Col-0 aerial part Original data
115 gun1-9 control -0.23 >More info -0.65 >More info Col-0 control Original data GEO bulk
116 npr1 sni1 ssn2 -0.38 >More info -0.50 >More info npr1 sni1 water water seedling Original data GEO bulk
117 IAA 0h -0.37 >More info -0.51 >More info control 0h root Original data GEO bulk
118 Root P recovery 0.53 >More info 0.34 >More info Root -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
119 short 17-degree- -0.19 >More info -0.68 >More info control short Original data GEO bulk
120 Whole root - S 3H -0.33 >More info -0.54 >More info Whole root - S 0H Original data GEO bulk
121 hai1-2 low water potential 0.34 >More info 0.53 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
122 bbx24 in Simulated Shade -0.30 >More info -0.57 >More info WT in simulated shade shade seedling Original data
123 5-Triiodobenzoic acid3 h 0.31 >More info 0.54 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
124 Shoot apex inflorescence (after bolting) 0.20 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
125 FarRed Light 45min 0.31 >More info 0.54 >More info White Light 45min Original data Light treatments
126 roottip control pWOL 0.29 >More info 0.56 >More info roottip control total control roottip Original data GEO bulk
127 plant (tga2-5-6) 4h phytoprostane A1 0.35 >More info 0.50 >More info plant (tga2-5-6) 4h control Original data GEO bulk
128 root hypoxia total 0.50 >More info 0.34 >More info root control total Original data GEO bulk
129 elf3-7-23ºC -0.64 >More info -0.20 >More info WT-23ºC Original data GEO bulk
130 oas-a1.1 Cd 18h 0.34 >More info 0.50 >More info Cd 18h root Root Original data GEO bulk
131 SCR-GR Time 1H Dex 0.29 >More info 0.54 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
132 Transgenic LEC2GR Seedling 1h Dex -0.32 >More info -0.51 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
133 sid2 0.29 >More info 0.54 >More info Col rosettes Original data GEO bulk
134 2 hr Hypoxia Total RNA 0.53 >More info 0.29 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
135 shoot hypoxia p35S -0.19 >More info -0.62 >More info shoot hypoxia total Original data GEO bulk
136 cca1-lhy before light 0.30 >More info 0.51 >More info before light whole seedlings Original data GEO bulk
137 Heat shock optimum 0.16 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
138 mkk2 control rep 0.27 >More info 0.53 >More info Col-0 Time 0 rep Original data GEO bulk
139 sfr3 cold 0.30 >More info 0.50 >More info WT cold All aerial tissue Original data GEO bulk
140 xyl-grown cell culture- 1h 1mM Suc -0.26 >More info -0.54 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
141 seed germinating in countinuous light 24h SL 0.12 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
142 afb3-1 2h KNO3 0.27 >More info 0.52 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
143 whole roots -Fe 6 hour 0.18 >More info 0.60 >More info whole roots standard Original data GEO bulk
144 pXVE:HA-EDM2-a untreated 0.26 >More info 0.52 >More info Col-0 untreated seedlings Original data GEO bulk
145 columella auxin 0.25 >More info 0.53 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
146 Red/FR Light45min -0.09 >More info -0.69 >More info FarRed Light 45min Original data Light treatments
147 seedling 3h after HZE WT 0.75 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
148 root - 01% oxygen - 2h 0.57 >More info 0.20 >More info root - 21% oxygen - 2h Original data GEO bulk
149 root - 08% oxygen - 48h -0.21 >More info -0.56 >More info root - 21% oxygen - 48h Original data GEO bulk
150 nbp35-3/- 0.50 >More info 0.26 >More info WT whole seedling Original data GEO bulk
151 siliques AtHb1 control 0.24 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
152 IAA 2h 0.26 >More info 0.50 >More info control 2h root Original data GEO bulk
153 naxillin 3h -0.51 >More info -0.24 >More info before treatment naxillin root Original data GEO bulk
154 Col0-PsmES4326-24hpi 0.14 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
155 Leafminer damaged seedlings 0.19 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
156 Octopus overexpressor 35SDYG25 0.53 >More info 0.20 >More info WS Original data GEO bulk
157 ptpks2 -0.02 >More info -0.69 >More info Col-WT leaves Original data GEO bulk
158 root - 04% oxygen - 30min -0.20 >More info -0.50 >More info root - 21% oxygen - 30min Original data GEO bulk
159 2hr continuous KNO3 ECR cell -0.18 >More info -0.52 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
160 shoot control p35S -0.15 >More info -0.54 >More info shoot control total Original data GEO bulk
161 Shoot submergence 7h 0.68 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
162 P.p 30hai 0.52 >More info 0.16 >More info At-Control roots Original data GEO bulk
163 short 12-degree- -0.15 >More info -0.53 >More info control short Original data GEO bulk
164 Cs root -0.16 >More info -0.52 >More info control root Original data GEO bulk
165 gis5 seedlings -0.50 >More info -0.18 >More info WT seedlings Whole seedlings (leaves + roots) Original data
166 Uniconazole 12 h 0.50 >More info 0.18 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
167 Laer pretreat GA Flg22 1h -0.04 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
168 Chemically 0.06 >More info 0.61 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
169 IAA7mII over-expressor IAA Treated -0.03 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
170 seedling SPL13 0.15 >More info 0.50 >More info seedling Col-0 Original data GEO bulk
171 ACC 3 h 0.12 >More info 0.51 >More info Mock 3 h Original data Basic hormone treatment of seedlings
172 roots ethylene 0.12 >More info 0.50 >More info roots air Original data GEO bulk
173 E.orontii Infection 3 day 0.09 >More info 0.51 >More info Uninfection 3 day Original data Elicitor treatments
174 Imbibed 1 h (seed) -0.06 >More info -0.52 >More info Dry seed Original data Time course of early seed germination
175 L2.5 mutant -0.02 >More info -0.54 >More info Wt Original data GEO bulk
176 Total RNA 35S:AtCSP1-FH1 cold -0.04 >More info -0.51 >More info Total RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
177 CCA1-ox 6am non-polysomal 0.04 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
178 sfr2 control -0.51 >More info -0.02 >More info WT control All aerial tissue Original data GEO bulk
179 Dark 2day ivd 0.51 >More info -0.01 >More info 0h ivd Original data
180 4d red light grown hmr-22 seedlings 0.71 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
181 cpctry -0.01 >More info 0.50 >More info Col Original data GEO bulk
182 miR396b overexpressor 0.08 >More info -0.56 >More info Col-0 vegetative apices together with the leaf primordia Original data