4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root - 08% oxygen - 30min
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List of experiments correlated with "root - 08% oxygen - 30min"  Help Download transcriptome of top 30
Score Experiment Correlation from
root - 08% oxygen - 30min		 Correlation to
root - 08% oxygen - 30min		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root - 08% oxygen - 30min 1.00 >More info 1.00 >More info root - 21% oxygen - 30min Original data GEO bulk
2 root - 04% oxygen - 30min 0.89 >More info 0.84 >More info root - 21% oxygen - 30min Original data GEO bulk
3 root - 04% oxygen - 2h 0.87 >More info 0.86 >More info root - 21% oxygen - 2h Original data GEO bulk
4 root - 01% oxygen - 30min 0.88 >More info 0.80 >More info root - 21% oxygen - 30min Original data GEO bulk
5 root - 08% oxygen - 2h 0.80 >More info 0.86 >More info root - 21% oxygen - 2h Original data GEO bulk
6 Aerobic e1 ate2 0.82 >More info 0.69 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
7 shoot hypoxia total 0.76 >More info 0.70 >More info shoot control total Original data GEO bulk
8 WT Shoot Hypoxia 0.75 >More info 0.71 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
9 MPK6 ox Shoot Hypoxia 0.77 >More info 0.68 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
10 WT Root Hypoxia 0.79 >More info 0.64 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
11 root - 01% oxygen - 2h 0.74 >More info 0.69 >More info root - 21% oxygen - 2h Original data GEO bulk
12 Aerobic prt6 0.73 >More info 0.66 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
13 root - 08% oxygen - 48h 0.65 >More info 0.70 >More info root - 21% oxygen - 48h Original data GEO bulk
14 root - 04% oxygen - 48h 0.69 >More info 0.65 >More info root - 21% oxygen - 48h Original data GEO bulk
15 MPK6 ox Root Hypoxia 0.73 >More info 0.60 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
16 Col-0 wt Hypoxic 0.78 >More info 0.54 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
17 roottip hypoxia total 0.85 >More info 0.46 >More info roottip control total Original data GEO bulk
18 pepr1-1 Pepr2-3 untreated 0.70 >More info 0.59 >More info WT untreated untreated Original data GEO bulk
19 root hypoxia total 0.79 >More info 0.47 >More info root control total Original data GEO bulk
20 root - 01% oxygen - 48h 0.75 >More info 0.46 >More info root - 21% oxygen - 48h Original data GEO bulk
21 35S:PCO1 hypoxia -0.65 >More info -0.56 >More info WT hypoxia whole rosette Original data
22 phr1 Shoot-Pi -0.76 >More info -0.41 >More info WT Root-Pi shoots Original data GEO bulk
23 Genotoxic Stress 3 h (root) -0.84 >More info -0.33 >More info Stress mock 3 h (root) Original data Stress treatments
24 Col-0 2HS 0.82 >More info 0.31 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
25 Col BTH 0.45 >More info 0.67 >More info Col rosettes Original data GEO bulk
26 mdh -0.72 >More info -0.38 >More info Col Original data GEO bulk
27 hypoxic 0.72 >More info 0.38 >More info WT aerobic hypoxia Original data GEO bulk
28 Col-0 low oxygen 0.83 >More info 0.27 >More info Col-0 Original data GEO bulk
29 seed germinating in countinuous light 24h SL 0.43 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
30 estradiole-induced ANAC059 -0.73 >More info -0.36 >More info transgenic (empty vector inducible system) Original data GEO bulk
31 2 hr Hypoxia IP RNA 0.80 >More info 0.28 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
32 Root dark control 7h -0.58 >More info -0.50 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
33 prt6-1 0.65 >More info 0.41 >More info Col-0 imbibed for 24 h Pre-germinated seeds Original data GEO bulk
34 spx1 spx2 complete -0.68 >More info -0.37 >More info WT complete seedlings Original data
35 Seedling KUA1-IOX est 0.63 >More info 0.41 >More info Seedling KUA1-IOX mock Original data
36 cngc19 0.76 >More info 0.28 >More info Col-0 root Original data GEO bulk
37 Heat shock optimum 0.39 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
38 2 hr Hypoxia Total RNA 0.80 >More info 0.23 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
39 mutant-line348 0.79 >More info 0.23 >More info WT-control whole plant Original data GEO bulk
40 Tsu -Fe 24h Roots 0.77 >More info 0.24 >More info Tsu +Fe 24h Roots Original data GEO bulk
41 Tsu-1 -Fe 24h 0.77 >More info 0.24 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
42 siliques AtHb1 control 0.49 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
43 roots bhlh100/101 0uM Fe -0.66 >More info -0.34 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
44 etr1 1% sucrose 12-day-old 0.76 >More info 0.24 >More info Col-0 1% sucrose 12-day-old Original data GEO bulk
45 Ws seedlings -0.68 >More info -0.32 >More info ged1 seedlings Original data GEO bulk
46 ged1 seedlings 0.68 >More info 0.32 >More info Ws seedlings Original data GEO bulk
47 HARAP aerobic 0.55 >More info 0.44 >More info WT aerobic aerobic Original data GEO bulk
48 C58 35dpi 0.74 >More info 0.25 >More info Reference 35dpi wounded inflorescence stalk segments Original data GEO bulk
49 Cs shoot -0.53 >More info -0.45 >More info control shoot Original data GEO bulk
50 Sha-1h IAA -0.75 >More info -0.23 >More info Sha-0h IAA whole plant Original data GEO bulk
51 Shoot apex inflorescence (after bolting) 0.31 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
52 Brz220 12 h -0.56 >More info -0.39 >More info Mock 12 h Original data Effect of brassinosteroid inhibitors on seedlings
53 gun1-9 control 0.69 >More info 0.26 >More info Col-0 control Original data GEO bulk
54 tumour 0.70 >More info 0.24 >More info non-tumor tumour Original data GEO bulk
55 ga1-3/brm-1 0.78 >More info 0.15 >More info wt shoots Original data GEO bulk
56 6m.KNO3 -0.71 >More info -0.20 >More info To. KNO3 14 day old Roots Original data GEO bulk
57 Col0-PsmES4326-24hpi 0.29 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
58 OE-HRA1 2HS  -0.67 >More info -0.22 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
59 UV Stress 24 h (root) -0.65 >More info -0.24 >More info Stress mock 24 h (root) Original data Stress treatments
60 Cs root -0.74 >More info -0.15 >More info control root Original data GEO bulk
61 Col0 roots 2hr KNO3 nitrogen -0.59 >More info -0.30 >More info Col0 roots 2hr KCl control root Original data GEO bulk
62 20m.KCl -0.56 >More info -0.32 >More info To. KCl 14 day old Roots Original data GEO bulk
63 whole roots -Fe 72 hour 0.84 >More info 0.04 >More info whole roots standard Original data GEO bulk
64 Fe starvation 72 h 0.84 >More info 0.04 >More info Control Original data GEO bulk
65 6m.KCl -0.67 >More info -0.21 >More info To. KCl 14 day old Roots Original data GEO bulk
66 Mutant ga1-5 0.70 >More info 0.18 >More info Ler-1 Original data Comparison of plant hormone related mutant
67 Tsu-1 -Fe 48h 0.72 >More info 0.15 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
68 Tsu -Fe 48h Roots 0.72 >More info 0.15 >More info Tsu +Fe 24h Roots Original data GEO bulk
69 Laer pretreat GA+JA Flg22 0h 0.71 >More info 0.15 >More info Laer pretreat water control leaf discs Original data GEO bulk
70 9 hr Hypoxia IP RNA 0.76 >More info 0.10 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
71 Mutant iaa5_6_19(IAA) 0.63 >More info 0.23 >More info Col (IAA) Original data GEO bulk
72 gai Control 0.73 >More info 0.13 >More info Laer Control leaf discs Original data GEO bulk
73 msg2 0.55 >More info 0.30 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
74 root cells epidermis 140mM NaCl 8 hours 0.70 >More info 0.15 >More info root cells epidermis standard 1 hour root cells epidermis Original data
75 cngc1 -0.73 >More info -0.12 >More info Ws-2 Seedlings Original data GEO bulk
76 NAA -AA 0.64 >More info 0.21 >More info B5 -AA B5 media supplemented with 4.5 µM NAA and untreated Original data
77 phr1 Root-Pi -0.62 >More info -0.23 >More info WT Root+Pi roots Original data GEO bulk
78 WT seedlings MV 0.65 >More info 0.19 >More info WT seedlings control Seedlings Original data GEO bulk
79 Mutant iaa5_6_19 0.65 >More info 0.19 >More info Col Original data GEO bulk
80 whole roots -Fe 48 hour 0.83 >More info 0.01 >More info whole roots standard Original data GEO bulk
81 root cells epidermis 140mM NaCl 20 hours 0.68 >More info 0.15 >More info root cells epidermis standard 1 hour root cells epidermis Original data
82 aux1 mutant roots air -0.64 >More info -0.19 >More info roots IAA Original data GEO bulk
83 WT +elf18 2h -0.60 >More info -0.23 >More info WT untreated elf18 Original data GEO bulk
84 cngc1-3 0.76 >More info 0.06 >More info Col-0 root Original data GEO bulk
85 rsl4 -0.54 >More info -0.28 >More info Col-0 Control root Original data GEO bulk
86 WT +Pep2 10h -0.52 >More info -0.30 >More info WT untreated Pep2 Original data GEO bulk
87 Paclobutrazol 3 h 0.54 >More info 0.28 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
88 Salt Stress 24 h (root) -0.67 >More info -0.15 >More info Stress mock 24 h (root) Original data Stress treatments
89 Sha-3h IAA -0.69 >More info -0.13 >More info Sha-0h IAA whole plant Original data GEO bulk
90 GA3 1 h (ga1) 0.64 >More info 0.17 >More info Mock 1 h (ga1) Original data Basic hormone treatment of seedlings
91 TAMM27 roots 2hr KCl control -0.62 >More info -0.19 >More info Col0 roots 2hr KCl control root Original data GEO bulk
92 root cells epidermis 140mM NaCl 1 hour 0.54 >More info 0.27 >More info root cells epidermis standard 1 hour root cells epidermis Original data
93 vtc2 day 7 induction 0.54 >More info 0.27 >More info WT day 7 induction day 7 induction of somatic embryogenesis Original data GEO bulk
94 Leafminer damaged seedlings 0.25 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
95 ALC Toc1 light-light Mock -0.70 >More info -0.11 >More info Col light-light Mock no ethanol Original data GEO bulk
96 WT (Ler) TSA -0.70 >More info -0.11 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and 100 ng/ml TSA. tissue culture Original data GEO bulk
97 24h +Pi -0.70 >More info -0.11 >More info 24h -Pi root Original data GEO bulk
98 gun1-9 norflurazon -0.54 >More info -0.26 >More info gun1-9 control Original data GEO bulk
99 bak1-3 untreated 0.63 >More info 0.17 >More info WT untreated untreated Original data GEO bulk
100 PNO8 3 h 0.53 >More info 0.27 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
101 npr1-1 SA -0.75 >More info -0.04 >More info Col-0 SA complete seedling Original data
102 Col-0 +lincomycin 0.56 >More info 0.23 >More info Col-0 -lincomycin Original data GEO bulk
103 estradiole-induced ANAC092 -0.68 >More info -0.11 >More info transgenic (empty vector inducible system) Original data GEO bulk
104 siliques WT hypoxia 0.78 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
105 250uM K-nitrate 20min roots -0.64 >More info -0.15 >More info 250uM KCl 20min roots Roots Original data GEO bulk
106 9 hr Hypoxia Total RNA 0.78 >More info 0.01 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
107 phyAphyB Dark 0.67 >More info 0.12 >More info phyB Dark Original data GEO bulk
108 9 hr Hypoxia 1 hr recovery IP RNA 0.72 >More info 0.07 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
109 Dark 0.57 >More info 0.22 >More info Control Original data GEO bulk
110 gun1gun5 far-red pretreated -0.70 >More info -0.09 >More info WT far-red pretreated Original data GEO bulk
111 Col-0 SA 0.59 >More info 0.19 >More info Col-0 water complete seedling Original data
112 PNO8 12 h -0.54 >More info -0.24 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
113 cat2-short-day 4d 0.61 >More info 0.17 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
114 1.5 hr nitrate 0.70 >More info 0.08 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
115 cat2-short-day 2d 0.57 >More info 0.21 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
116 Light 0.73 >More info 0.04 >More info Control Original data GEO bulk
117 35S-MIF1 dark grown 0.67 >More info 0.10 >More info Dark-grown WT control Original data GEO bulk
118 hog1-7 0.71 >More info 0.05 >More info wt whole seedling Original data GEO bulk
119 piffq FR 24h 0.68 >More info 0.08 >More info WT FR 24h whole seedling Original data GEO bulk
120 Var2-1 roots 2hr KCl control -0.64 >More info -0.12 >More info Col0 roots 2hr KCl control root Original data GEO bulk
121 rao2 H2O2 3h -0.51 >More info -0.25 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
122 mutant-line774 0.71 >More info 0.05 >More info WT-control whole plant Original data GEO bulk
123 RRE2 Chitin 0.70 >More info 0.05 >More info Chitin Original data GEO bulk
124 cys-c1 root 0.70 >More info 0.05 >More info Root-WT roots Original data GEO bulk
125 8-DAC chr11-1chr17-1 -0.62 >More info -0.13 >More info 8-DAC Col-0 leaf explants Original data
126 Fumonisin B1 -0.53 >More info -0.22 >More info control Fumonisin B1 protoplast Original data GEO bulk
127 Cambium 5 days NAA 0.69 >More info 0.06 >More info Stem tissue T0 Interfascicular cambium induced after 5 days NAA in vitro treatment laser capture microdissection Original data GEO bulk
128 Var2-1 roots 2hr KNO3 nitrogen -0.58 >More info -0.17 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
129 CCA1-ox 6am non-polysomal 0.24 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
130 sdg2 -0.57 >More info -0.17 >More info wt seedling Original data GEO bulk
131 per1 in Pi deficiency medium 0.74 >More info -0.00 >More info Col in Pi deficiency medium root Original data GEO bulk
132 swn-7 -0.50 >More info -0.24 >More info Col whole plant Original data GEO bulk
133 2hr continuous KCl and MSX control PeR cell -0.61 >More info -0.13 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
134 ABA control 0.66 >More info 0.07 >More info No ABA control Original data GEO bulk
135 IAA/inhibitor A Treated 0.58 >More info 0.15 >More info IAA Treated Original data GEO bulk
136 albino Ds13-2198-1 -0.51 >More info -0.22 >More info control Original data GEO bulk
137 35S::ZAT12 -0.63 >More info -0.10 >More info gl1 Original data GEO bulk
138 Laer pretreat GA Flg22 1h 0.02 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
139 Cd 18h root 0.09 >More info 0.64 >More info WT-Untreated Root Original data GEO bulk
140 ALC Toc1 light-light EtOH -0.67 >More info -0.05 >More info Col light-light EtOH 2.5% ethanol Original data GEO bulk
141 Col-0 root drought 0.62 >More info 0.10 >More info Col-0 root water root Original data GEO bulk
142 Callus 0.65 >More info 0.07 >More info Control for tissue data callus Original data GEO bulk
143 ACN1-2 Sucrose -0.74 >More info 0.02 >More info Col-7 Sucrose Original data GEO bulk
144 Norflurazon 0.51 >More info 0.21 >More info Col-0 Original data GEO bulk
145 Mutant ap1-15(shoot apex) 0.54 >More info 0.18 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
146 1.5 hr ammonium 0.71 >More info 0.01 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
147 gabaculin 0.57 >More info 0.15 >More info WT Col-0 seedling Original data GEO bulk
148 (Col-0)+200 uM As -0.50 >More info -0.22 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
149 phyB Dark -0.59 >More info -0.13 >More info WT(Ler) Dark Original data GEO bulk
150 Norflurazon 0.51 >More info 0.21 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
151 aerial organ callus inducing medium 96 h 0.62 >More info 0.10 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
152 COL-0-Fe--root 0.54 >More info 0.17 >More info COL-0-Ctrl--root root Original data
153 Stem tissue 5 days NAA 0.71 >More info -0.00 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
154 root cells epidermis 140mM NaCl 3 hours 0.62 >More info 0.09 >More info root cells epidermis standard 1 hour root cells epidermis Original data
155 Ts5 roots 2hr KNO3 nitrogen -0.64 >More info -0.07 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
156 opr3 OPDA 0.5 h 0.50 >More info 0.21 >More info opr3 0 h Original data GEO bulk
157 WT seedlings IAA -0.50 >More info -0.21 >More info WT seedlings control Seedlings Original data GEO bulk
158 bri1-116 -0.02 >More info 0.73 >More info Col seedling Original data GEO bulk
159 hira-root -0.66 >More info -0.04 >More info WT-root root Original data
160 9 hr Hypoxia 1 hr recovery Total RNA 0.73 >More info -0.03 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
161 toc1-1-69hr 0.51 >More info 0.19 >More info WT-untreated-69hr none seedlings aerial tissue Original data GEO bulk
162 Prohexadione 3 h -0.57 >More info -0.13 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
163 ABA DFPM 0.60 >More info 0.10 >More info control Original data GEO bulk
164 WT mitomycin C 0.50 >More info 0.19 >More info WT mock shoot apical meristem Original data
165 clf-28 swn-7 0.59 >More info 0.10 >More info Col whole plant Original data GEO bulk
166 gun5 control 0.63 >More info 0.05 >More info Col-0 control Original data GEO bulk
167 overexpresser LBD37 in -N -0.60 >More info -0.08 >More info WT in -N nitrogen depletion whole seedling Original data GEO bulk
168 root cells stele 140mM NaCl 8 hours 0.55 >More info 0.12 >More info root cells stele standard 1 hour root cells stele Original data
169 rosette Dark Wounded 0.55 >More info 0.12 >More info rosette Dark Control Original data GEO bulk
170 ein3 eil1 0.54 >More info 0.13 >More info Col-0 mock Whole seedling Original data GEO bulk
171 SCL3 OE -0.56 >More info -0.11 >More info Col-0 whole root Original data GEO bulk
172 phyABDE Rc50 -0.54 >More info -0.13 >More info phyABDE Dark red light whole seedling Original data GEO bulk
173 Control KNO3 roots - 8hours -0.59 >More info -0.08 >More info Control KCl roots - 8hours 5mM KNO3 on both sides for 8 hours roots Original data GEO bulk
174 fus3-3 8 DAF Seed 0.59 >More info 0.08 >More info WT (Col-0) 8 DAF Seed developing seeds dissected from sliques Original data
175 erf5 erf6 0.58 >More info 0.09 >More info WT+water water seedlings Original data GEO bulk
176 mutant-line409 0.69 >More info -0.02 >More info WT-control whole plant Original data GEO bulk
177 per1 in control medium 0.76 >More info -0.10 >More info Col in control medium root Original data GEO bulk
178 AtLysM RLK1 mutant water -0.51 >More info -0.15 >More info WT water Original data GEO bulk
179 msg2-BR 0.55 >More info 0.11 >More info BR BR dark-grown seedlings Original data GEO bulk
180 cop1 Seedling BL+ABA 0.63 >More info 0.03 >More info WT Seedling BL+ABA Original data GEO bulk
181 piffq 3d WL 0.65 >More info 0.01 >More info WT 3d WL whole seedling Original data GEO bulk
182 ahg2-1abi1-1 0.60 >More info 0.06 >More info WT (Col) control Original data GEO bulk
183 root callus inducing medium 12 h -0.68 >More info 0.03 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
184 axr2 0.52 >More info 0.13 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
185 ago1-27 -0.51 >More info -0.14 >More info Col-0 vegetative apex Original data GEO bulk
186 WT 1wk -P 0.54 >More info 0.11 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
187 gun5 norflurazon -0.50 >More info -0.15 >More info gun5 control Original data GEO bulk
188 WT resupplied Pi 4h -0.53 >More info -0.12 >More info WT complete seedlings Original data
189 root cells epidermis 140mM NaCl 32 hours 0.59 >More info 0.06 >More info root cells epidermis standard 1 hour root cells epidermis Original data
190 35S::HRE2 Aerobic -0.52 >More info -0.12 >More info Col-0 wt Aerobic untreated control Original data GEO bulk
191 max4 hypocotyl 0.62 >More info 0.02 >More info wt hypocotyl hypocotyl Original data GEO bulk
192 empty vector IAA Treated -0.52 >More info -0.12 >More info empty vector mock Original data GEO bulk
193 PRR5-VP 12h light on -0.69 >More info 0.05 >More info WT 12h light on whole plant Original data GEO bulk
194 DFPM 0.69 >More info -0.05 >More info control Original data GEO bulk
195 T101D 10mM NH4NO3 0.07 >More info 0.56 >More info col 10mM NH4NO3 Root Original data
196 pnp1-1 1wk -P 0.52 >More info 0.11 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
197 Truncated AC2 T1 -0.64 >More info 0.01 >More info AC2 and AC2del control T1 one day post infusion with Agrobacterium containing a truncated version of CaLCuV AC2 Arabidopsis rosette leaves Original data
198 root cells epidermis 140mM NaCl 48 hours 0.67 >More info -0.04 >More info root cells epidermis standard 1 hour root cells epidermis Original data
199 intact root control 0.52 >More info 0.11 >More info Control for tissue data mock whole root Original data GEO bulk
200 toc1-1-57hr -0.52 >More info -0.11 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
201 Root -Cs -0.56 >More info -0.06 >More info Control-root Original data GEO bulk
202 Col-7 Sucrose 0.56 >More info 0.06 >More info col-7 Original data GEO bulk
203 Kas2 roots 2hr KCl control -0.56 >More info -0.06 >More info Col0 roots 2hr KCl control root Original data GEO bulk
204 root cells cortex 140mM NaCl 32 hours 0.59 >More info 0.03 >More info root cells cortex standard 1 hour root cells cortex Original data
205 JMJ24 knockout 0.51 >More info 0.11 >More info WT Original data GEO bulk
206 Atwrky40 high light 0.54 >More info 0.08 >More info Col0 high light high light for 1h at 1000 μE m-2s-1 leaf Original data GEO bulk
207 Prohexadione 12 h -0.52 >More info -0.10 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
208 Propiconazole 3 h 0.54 >More info 0.07 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
209 15m.KNO3 -0.63 >More info 0.02 >More info To. KNO3 14 day old Roots Original data GEO bulk
210 WT hypoxia 0.56 >More info 0.04 >More info WT normoxia whole rosette Original data
211 Octopus mutant DYG25 -0.66 >More info 0.06 >More info WS Original data GEO bulk
212 DMTU 0.64 >More info -0.04 >More info control Original data GEO bulk
213 L2.5 mutant -0.50 >More info -0.10 >More info Wt Original data GEO bulk
214 myb50 cork 0.63 >More info -0.03 >More info wt cork cork Original data GEO bulk
215 root callus inducing medium 24h -0.61 >More info 0.01 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
216 Bay-0-3h IAA -0.56 >More info -0.03 >More info Bay-0-0h IAA whole plant Original data GEO bulk
217 Mutant ap2-6(shoot apex) 0.50 >More info 0.09 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
218 BLM -0.62 >More info 0.03 >More info CK BLM seedling Original data
219 shoot hypoxia pCER5 0.51 >More info 0.08 >More info shoot hypoxia total Original data GEO bulk
220 dsr1 -0.62 >More info 0.03 >More info WT mock Whole seedling Original data GEO bulk
221 FHY3p dark+DEX -0.61 >More info 0.02 >More info FHY3p dark+mock Original data GEO bulk
222 sta1 0.52 >More info 0.06 >More info WT Original data GEO bulk
223 myb triple mutant 8h-pollinated ms1 0.54 >More info 0.04 >More info WT 8h-pollinated pistil Original data GEO bulk
224 Bay-0-1h IAA -0.55 >More info -0.03 >More info Bay-0-0h IAA whole plant Original data GEO bulk
225 2hr transitory KNO3 PeR cell -0.60 >More info 0.02 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
226 elevated CO2 high Mg root -0.62 >More info 0.04 >More info atmospheric CO2 high Mg root Root Original data
227 mutant-line1135 0.59 >More info -0.01 >More info WT-control whole plant Original data GEO bulk
228 Full AC2 T2 0.59 >More info -0.01 >More info AC2 and AC2del control T2 two days post infusion with Agrobacterium containing full-length CaLCuV AC2 Arabidopsis rosette leaves Original data
229 ddm1-12 0.59 >More info -0.01 >More info wt whole seedling Original data GEO bulk
230 root cells endodermis 140mM NaCl 20 hours 0.55 >More info 0.02 >More info root cells endodermis standard 1 hour root cells endodermis Original data
231 root cells stele 140mM NaCl 20 hours 0.51 >More info 0.06 >More info root cells stele standard 1 hour root cells stele Original data
232 WT Root-Pi -0.51 >More info -0.06 >More info WT Root+Pi roots Original data GEO bulk
233 tt4 UV 0.56 >More info 0.01 >More info UV aerial region Original data GEO bulk
234 Col in Pi deficiency medium 0.59 >More info -0.02 >More info Col in control medium root Original data GEO bulk
235 overexpresser LBD38 in -N -0.58 >More info 0.01 >More info WT in -N nitrogen depletion whole seedling Original data GEO bulk
236 0.2µM SMX -0.73 >More info 0.16 >More info control Whole seedling Original data GEO bulk
237 root longitudinal zone-4 NaCl 0.57 >More info -0.00 >More info root longitudinal zone-4 Original data GEO bulk
238 piffq 2d WL 0.57 >More info -0.00 >More info WT 2d WL whole seedling Original data GEO bulk
239 pvip1 pvip2 seedling 0.59 >More info -0.02 >More info Col-0 seedling seedling Original data GEO bulk
240 rosettes WT drought 0.52 >More info 0.04 >More info rosettes WT watered Original data GEO bulk
241 root cells cortex 140mM NaCl 48 hours 0.63 >More info -0.07 >More info root cells cortex standard 1 hour root cells cortex Original data
242 HopZ1a treated 0.56 >More info 0.00 >More info col Original data GEO bulk
243 mbd4 mutant thaliana 10-day-old seedling 0.61 >More info -0.05 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
244 M6PR transgenic leaf 100mM NaCl -0.59 >More info 0.03 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
245 Col-O high light 0.57 >More info -0.01 >More info Col-O bule light Original data GEO bulk
246 Nuclear GSH1 -0.59 >More info 0.03 >More info Cytoplasmic GSH1 Control Original data GEO bulk
247 RGA-GR-DEX 0.59 >More info -0.03 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
248 Mutant bri1 0.59 >More info -0.03 >More info Ws-2 Original data Comparison of plant hormone related mutant
249 csn3-1 light 0.50 >More info 0.05 >More info WT light Original data GEO bulk
250 Col upon hypoxia 6 hrs 0.81 >More info -0.26 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
251 root cells endodermis 140mM NaCl 8 hours 0.54 >More info 0.01 >More info root cells endodermis standard 1 hour root cells endodermis Original data
252 hsfa1 quadruple mutant 0.50 >More info 0.05 >More info WT (Col-0) whole seedling Original data GEO bulk
253 roots ethylene 0.55 >More info 0.00 >More info roots air Original data GEO bulk
254 RRE1 Chitin 0.58 >More info -0.03 >More info Chitin Original data GEO bulk
255 FLIGHT BRIC G PDFU-112 seedlings 0.60 >More info -0.05 >More info GROUNDCONTROL BRIC G PDFU-135 seedlings seedling Original data
256 seedlings +5AC 0.67 >More info -0.13 >More info control seedlings 10-day old whole seedling Original data GEO bulk
257 root cells cortex 140mM NaCl 8 hours 0.53 >More info 0.01 >More info root cells cortex standard 1 hour root cells cortex Original data
258 root cells cortex 140mM NaCl 20 hours 0.60 >More info -0.06 >More info root cells cortex standard 1 hour root cells cortex Original data
259 seedlings + TSA 0.64 >More info -0.10 >More info control seedlings 10-day old whole seedling Original data GEO bulk
260 root cells endodermis 140mM NaCl 32 hours 0.57 >More info -0.03 >More info root cells endodermis standard 1 hour root cells endodermis Original data
261 toc1-1-65hr 0.50 >More info 0.03 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
262 root cells endodermis 140mM NaCl 3 hours 0.52 >More info 0.01 >More info root cells endodermis standard 1 hour root cells endodermis Original data
263 KCl germinant -0.59 >More info 0.06 >More info Millipore Water germinant KCl seedling Original data
264 mbd6 mutant thaliana 10-day-old seedling 0.61 >More info -0.08 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
265 Mutant cry1 -0.64 >More info 0.11 >More info Col-0 Original data GEO bulk
266 Col-O low light 0.53 >More info -0.00 >More info Col-O bule light Original data GEO bulk
267 AhNAS2-RNAi +Zn 0.52 >More info 0.01 >More info WT +Zn Root Original data GEO bulk
268 seedlings-week-old RECA1-overexpressing
transgenic		 0.67 >More info -0.14 >More info seedlings-week-old Col-0 seedlings Original data
269 cry1 low light -0.64 >More info 0.11 >More info Col-O low light Original data GEO bulk
270 Te 3d 0.70 >More info -0.17 >More info Te CA Leaves Original data
271 micropylar endosperm pre-globular -0.50 >More info -0.02 >More info whole seed sections pre-globular Original data GEO bulk
272 Heat Recovery 24 h (root) -0.63 >More info 0.11 >More info Stress mock 24 h (root) Original data Stress treatments
273 IPT8 mutant tZ 12h -0.60 >More info 0.08 >More info Control 12h 12 hours primary root tip (5 mm) Original data GEO bulk
274 npr1 sni1 SA 0.53 >More info -0.01 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
275 L2.4 mutant -0.50 >More info -0.02 >More info Wt Original data GEO bulk
276 PRR5-VP 6h light on -0.50 >More info -0.02 >More info WT 6h light on whole plant Original data GEO bulk
277 ein2 mutant roots mock -0.57 >More info 0.05 >More info roots mock Original data GEO bulk
278 root cells stele 140mM NaCl 48 hours 0.52 >More info -0.01 >More info root cells stele standard 1 hour root cells stele Original data
279 fri-flc 0.50 >More info 0.01 >More info WT Original data GEO bulk
280 pnp1-1 3h +P 0.50 >More info 0.01 >More info WT 3h +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
281 HSP90 Reduced RNAi-C1 0.52 >More info -0.01 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
282 TA induced 0.60 >More info -0.09 >More info Methanol TA Suspension cells Original data GEO bulk
283 seedling mSPL13 0.55 >More info -0.04 >More info seedling Col-0 Original data GEO bulk
284 shoots bhlh100/101 0uM Fe 0.50 >More info -0.00 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
285 Shoot submergence 7h 0.50 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
286 ABA 24h 0.50 >More info 0.00 >More info EtOH 24h 24hr Original data GEO bulk
287 naxillin 6h 0.50 >More info -0.00 >More info before treatment naxillin root Original data GEO bulk
288 myb50 xylem 0.55 >More info -0.06 >More info wt xylem xylem Original data GEO bulk
289 pnp1-1 3h -P 0.56 >More info -0.07 >More info WT 3h -P No phosphate medium seedlings without roots Original data GEO bulk
290 OsTOP6A1 ox -0.50 >More info 0.01 >More info Seedling WT Original data GEO bulk
291 Mutant axr3-1 0.72 >More info -0.23 >More info Col Original data GEO bulk
292 8 hr ammonium 0.71 >More info -0.22 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
293 C58 3hpi 0.60 >More info -0.11 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
294 BI-1-30min IAA -0.56 >More info 0.08 >More info BI-1-0h IAA whole plant Original data GEO bulk
295 LTN008-2 aza-dc 0.54 >More info -0.06 >More info LTN012-2 Mock Original data
296 Genotoxic Stress 3 h (shoot) -0.54 >More info 0.06 >More info Stress mock 3 h (shoot) Original data Stress treatments
297 IRP1-OE-Ctrl--shoot 0.54 >More info -0.06 >More info COL-0-Ctrl--shoot shoot Original data
298 iron minus 24h -0.57 >More info 0.09 >More info iron +24h root Original data GEO bulk
299 12m.KNO3 -0.51 >More info 0.03 >More info To. KNO3 14 day old Roots Original data GEO bulk
300 shoot hypoxia p35S 0.09 >More info -0.56 >More info shoot hypoxia total Original data GEO bulk
301 SCR-GR Time 12H Dex 0.65 >More info -0.18 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
302 root cells cortex 140mM NaCl 3 hours 0.51 >More info -0.04 >More info root cells cortex standard 1 hour root cells cortex Original data
303 TNT-seedlings 0.69 >More info -0.22 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
304 amiRAP hypoxic -0.69 >More info 0.22 >More info hypoxic hypoxia Original data GEO bulk
305 triplod male excess 0.54 >More info -0.08 >More info tetraploid Original data GEO bulk
306 R. amphibia submerged 0.54 >More info -0.08 >More info R. amphibia air Original data GEO bulk
307 Pseudomonas 0.71 >More info -0.25 >More info Control pseudomonas treated whole seedling Original data GEO bulk
308 scl3 0.58 >More info -0.12 >More info Col-0 whole root Original data GEO bulk
309 R. solani AG8 0.62 >More info -0.18 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
310 HSP90 Reduced RNAi-B1 0.52 >More info -0.09 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
311 HSP90 Reduced RNAi-A2 0.52 >More info -0.09 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
312 Col leaf 100mM NaCl 0.59 >More info -0.16 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
313 Col leaf 100mM NaCl 0.59 >More info -0.16 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
314 Col 100mM NaCl 0.59 >More info -0.16 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
315 TiO2 germinant -0.54 >More info 0.12 >More info Millipore Water germinant TiO2 seedling Original data
316 Ler KAR1 24h seed 0.11 >More info -0.53 >More info Ler WATER 24h seed KAR1 seed Original data GEO bulk
317 whole roots -Fe 24hour 0.50 >More info -0.08 >More info whole roots standard Original data GEO bulk
318 pif4pif5 mut 24h FR -0.50 >More info 0.08 >More info WT 24h FR Original data GEO bulk
319 Fe starvation 24 h 0.50 >More info -0.08 >More info Control Original data GEO bulk
320 auxin and brassinazole seedlings 0.59 >More info -0.17 >More info auxin seedlings Original data GEO bulk
321 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.58 >More info 0.16 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
322 Col-0 low oxygen 0.63 >More info -0.22 >More info Col-0 control low oxygen root Original data GEO bulk
323 gpa1 -ABA GC -0.53 >More info 0.12 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
324 oas-a1.1 Cd 18h 0.56 >More info -0.15 >More info Cd 18h root Root Original data GEO bulk
325 elevated CO2 normal Mg root -0.56 >More info 0.15 >More info atmospheric CO2 normal Mg root Root Original data
326 Col-0 flu HL 0h -0.55 >More info 0.14 >More info Col-0 WT HL 0h without high light treatment whole seedlings without root Original data
327 root cells endodermis 140mM NaCl 48 hours 0.54 >More info -0.13 >More info root cells endodermis standard 1 hour root cells endodermis Original data
328 iron minus 6 h -0.59 >More info 0.18 >More info iron +6 h root Original data GEO bulk
329 pvip1 pvip2 0.61 >More info -0.20 >More info Col-0 whole rosettes Original data GEO bulk
330 9m.KNO3 -0.52 >More info 0.12 >More info To. KNO3 14 day old Roots Original data GEO bulk
331 Anoxia 0.54 >More info -0.14 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
332 GST 4 h (leaf) 0.59 >More info -0.20 >More info Mock 4 h (leaf) Original data Elicitor treatments
333 oas-a1.1 root -0.67 >More info 0.29 >More info WT-Untreated Root Original data GEO bulk
334 mbd11 mutant thaliana 10-day-old seedling 0.62 >More info -0.24 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
335 BAM7-Cat Ox untreated 0.50 >More info -0.12 >More info WT untreated none shoot Original data
336 04h Col-0 -0.51 >More info 0.13 >More info 00h Col-0 Original data GEO bulk
337 Selenate (root) 0.59 >More info -0.21 >More info Ws (root) Original data GEO bulk
338 Root Selenate 0.59 >More info -0.21 >More info Root control 40 micromolar selenate Root Original data GEO bulk
339 atmospheric CO2 low Mg root -0.54 >More info 0.16 >More info atmospheric CO2 normal Mg root Root Original data
340 ckh1 CK25 0.54 >More info -0.16 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
341 P35S:rGRF3 0.70 >More info -0.32 >More info WS Original data GEO bulk
342 CBF3 0mM NaCl 0.51 >More info -0.14 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
343 2hr continuous KNO3 ECR cell -0.22 >More info 0.58 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
344 hni9 low nitrogen -0.55 >More info 0.20 >More info WT low nitrogen roots Original data GEO bulk
345 des1.1 0.17 >More info -0.51 >More info Leaves-WT leaf Original data GEO bulk
346 Col 3d 0.54 >More info -0.21 >More info Col CA Leaves Original data
347 IAA 24h 0.58 >More info -0.25 >More info control 24h root Original data GEO bulk
348 P.p 6hai 0.71 >More info -0.39 >More info At-Control roots Original data GEO bulk
349 myb3 myb3r4d -0.67 >More info 0.36 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
350 aerial organ callus inducing medium 12 h 0.51 >More info -0.20 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
351 nd-1 mock 48 hpi 0.54 >More info -0.24 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
352 ani1 T16 -0.66 >More info 0.36 >More info WT T16 root tissue Original data GEO bulk
353 2hr continuous KNO3 and MSX PeR cell -0.59 >More info 0.29 >More info 2hr continuous KCl and MSX control PeR cell Pericycle root cells Original data GEO bulk
354 shoot control p35S 0.20 >More info -0.50 >More info shoot control total Original data GEO bulk
355 vtc2-1 0.21 >More info -0.50 >More info Col-0 whole plant Original data GEO bulk
356 P.p 2.5hai 0.69 >More info -0.40 >More info At-Control roots Original data GEO bulk
357 P.p 30hai 0.51 >More info -0.23 >More info At-Control roots Original data GEO bulk
358 Ws 100mM NaCl 0.56 >More info -0.29 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
359 Ws leaf 100mM NaCl 0.56 >More info -0.29 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
360 mtf1-1 0.56 >More info -0.30 >More info Col0 root Original data
361 IAA7mII over-expressor IAA Treated -0.43 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
362 afb3-1 2h KCl -0.52 >More info 0.27 >More info Ws 2h KCl 2 hours of 5 mM KCl Arabidopsis root Original data GEO bulk
363 P.p 10.5hai 0.70 >More info -0.45 >More info At-Control roots Original data GEO bulk
364 WT +Pep2 2h -0.56 >More info 0.35 >More info WT untreated Pep2 Original data GEO bulk
365 ago4-1 0.54 >More info -0.33 >More info WT La-er whole plants Original data GEO bulk
366 IRP1-OE-Fe--shoot 0.60 >More info -0.39 >More info COL-0-Fe--shoot shoot Original data
367 bHLH122 ox -0.57 >More info 0.37 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
368 ckh2 CK25 0.53 >More info -0.36 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
369 2hr transitory KNO3 ECR cell -0.43 >More info 0.55 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
370 ckh2 CK0 0.50 >More info -0.39 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
371 toc1-1-77hr 0.42 >More info -0.51 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
372 Col-0 V. longisporum-inoculated 48 hpi 0.45 >More info -0.51 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
373 ARR22-ox -0.53 >More info 0.48 >More info Col-0 Original data Cytokinin treatment of seedlings
374 CeO2 germinant -0.59 >More info 0.63 >More info Millipore Water germinant CeO2 seedling Original data