4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root callus inducing medium 12 h
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List of experiments correlated with "root callus inducing medium 12 h"  Help Download transcriptome of top 30
Score Experiment Correlation from
root callus inducing medium 12 h		 Correlation to
root callus inducing medium 12 h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root callus inducing medium 12 h 1.00 >More info 1.00 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
2 root callus inducing medium 24h 0.92 >More info 0.89 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
3 root callus inducing medium 48 h 0.88 >More info 0.83 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
4 root callus inducing medium 96 h 0.84 >More info 0.75 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
5 IAA 2h 0.50 >More info 0.71 >More info control 2h root Original data GEO bulk
6 Differentiation 12h 0.59 >More info 0.57 >More info Differentiation 0h leaves Original data
7 Differentiation 24h 0.58 >More info 0.57 >More info Differentiation 0h leaves Original data
8 roots IAA 0.50 >More info 0.65 >More info roots mock Original data GEO bulk
9 FLIGHT TAGESB plate6 ROOTS -0.46 >More info -0.68 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
10 GiantCell Root 0.48 >More info 0.65 >More info Control Root laser captured giant cells Original data GEO bulk
11 Col-0 2HS -0.36 >More info -0.73 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
12 WT Shoot Hypoxia -0.39 >More info -0.67 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
13 MPK6 ox Shoot Hypoxia -0.38 >More info -0.68 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
14 myb61 xylem -0.34 >More info -0.72 >More info wt xylem xylem Original data GEO bulk
15 IAA 4h 0.47 >More info 0.58 >More info control 4h root Original data GEO bulk
16 IAA 1h 0.40 >More info 0.64 >More info control 1h root Original data GEO bulk
17 Col-0 6h NAA 0.44 >More info 0.59 >More info Col-0 6h MOCK Original data GEO bulk
18 NAA 6h 0.45 >More info 0.58 >More info before treatment NAA root Original data GEO bulk
19 35S::MBF1c -0.38 >More info -0.64 >More info control Original data GEO bulk
20 roottip hypoxia total -0.34 >More info -0.66 >More info roottip control total Original data GEO bulk
21 Rsch 8h -0.39 >More info -0.61 >More info Rsch CA Leaves Original data
22 IAA 3 h 0.31 >More info 0.68 >More info Mock 3 h Original data Basic hormone treatment of seedlings
23 Fei-0-3h IAA 0.39 >More info 0.60 >More info Fei-0-0h IAA whole plant Original data GEO bulk
24 rosette Light Wounded -0.36 >More info -0.62 >More info rosette Light Control Original data GEO bulk
25 Sha-3h IAA 0.44 >More info 0.54 >More info Sha-0h IAA whole plant Original data GEO bulk
26 aux1 mutant roots air -0.44 >More info -0.54 >More info roots IAA Original data GEO bulk
27 WT 3H Cold -0.24 >More info -0.73 >More info WT control Original data GEO bulk
28 abi1 hypocotyl -0.32 >More info -0.65 >More info Ler hypocotyl hypocotyl Original data GEO bulk
29 intact root auxin 0.42 >More info 0.55 >More info intact root control 5 uM indole-3-acetic acid whole root Original data GEO bulk
30 camta1 root drought 0.52 >More info 0.44 >More info Col-0 root drought root Original data GEO bulk
31 Col-0 (t-zeatin 3 h) 0.33 >More info 0.62 >More info Col-0 Original data Cytokinin treatment of seedlings
32 shoot hypoxia total -0.32 >More info -0.63 >More info shoot control total Original data GEO bulk
33 root - 04% oxygen - 2h -0.19 >More info -0.75 >More info root - 21% oxygen - 2h Original data GEO bulk
34 MPK6 ox Root Hypoxia -0.32 >More info -0.62 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
35 WT 6H Cold -0.22 >More info -0.72 >More info WT control Original data GEO bulk
36 2 hr Hypoxia Total RNA -0.33 >More info -0.61 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
37 IAA 8h 0.41 >More info 0.53 >More info control 8h root Original data GEO bulk
38 Sha-1h IAA 0.36 >More info 0.56 >More info Sha-0h IAA whole plant Original data GEO bulk
39 Differentiation 36h 0.51 >More info 0.41 >More info Differentiation 0h leaves Original data
40 AsAKiin11 T1 0.31 >More info 0.61 >More info C2 C2del and (As)AKiin11 control T1 one day post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
41 Protoplast Induced -0.31 >More info -0.60 >More info Uninduced Original data GEO bulk
42 axr1 hypocotyl -0.34 >More info -0.57 >More info wt hypocotyl hypocotyl Original data GEO bulk
43 auxin and brassinazole seedlings -0.40 >More info -0.50 >More info auxin seedlings Original data GEO bulk
44 21h-DC3000 hrpA 0.28 >More info 0.62 >More info 21h-DC3000 leaves Original data GEO bulk
45 rosette Dark Wounded -0.30 >More info -0.60 >More info rosette Dark Control Original data GEO bulk
46 WT Root Hypoxia -0.32 >More info -0.58 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
47 root protoplasts 40 mM NaCl -0.34 >More info -0.55 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
48 Col-0 2h NAA 0.32 >More info 0.56 >More info Col-0 6h MOCK Original data GEO bulk
49 GiantCell Root 0.51 >More info 0.37 >More info Control Root laser captured giant cells Original data GEO bulk
50 opr3 JA 0.5 h -0.16 >More info -0.72 >More info opr3 0 h Original data GEO bulk
51 root hypoxia total -0.33 >More info -0.54 >More info root control total Original data GEO bulk
52 root - 01% oxygen - 2h -0.22 >More info -0.65 >More info root - 21% oxygen - 2h Original data GEO bulk
53 Col 8h -0.21 >More info -0.66 >More info Col CA Leaves Original data
54 NahG 0.27 >More info 0.59 >More info Col-0 Leaves Original data GEO bulk
55 FLIGHT TAGES 2B plate6 HYPOCOTYLS -0.36 >More info -0.50 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
56 Leaf wounded -0.34 >More info -0.51 >More info Leaf control vegetative leaf Original data GEO bulk
57 Light -0.28 >More info -0.57 >More info Control Original data GEO bulk
58 3x(m) -0.13 >More info -0.72 >More info 2x two week old seedlings Original data
59 Stem tissue 2 days NAA 0.28 >More info 0.56 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
60 2hr continuous KCl and MSX control PeR cell -0.30 >More info -0.53 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
61 TA induced -0.32 >More info -0.50 >More info Methanol TA Suspension cells Original data GEO bulk
62 empty vector IAA Treated 0.21 >More info 0.60 >More info empty vector mock Original data GEO bulk
63 root - 01% oxygen - 30min -0.18 >More info -0.62 >More info root - 21% oxygen - 30min Original data GEO bulk
64 slr-1 6h NAA -0.28 >More info -0.52 >More info Col-0 6h NAA Original data GEO bulk
65 vtc2 mature somatic embryo -0.28 >More info -0.52 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
66 2hr transitory KNO3 PrR cell -0.30 >More info -0.50 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
67 1h +Pi 0.22 >More info 0.58 >More info 1h -Pi root Original data GEO bulk
68 4C 2h(SOIL) -0.21 >More info -0.58 >More info 4C 0h(SOIL) Original data GEO bulk
69 Te 8h -0.28 >More info -0.50 >More info Te CA Leaves Original data
70 Atss3 Dark4 0.27 >More info 0.50 >More info Atss3 Dark0.5 Original data GEO bulk
71 seed germinating in countinuous light 24h SL 0.08 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
72 bHLH122 ox 0.21 >More info 0.54 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
73 Methyl Jasmonate 0.5 h -0.17 >More info -0.57 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
74 Col-0 wt Hypoxic -0.22 >More info -0.52 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
75 sfr6 drought 0.19 >More info 0.55 >More info WT drought All aerial tissue Original data GEO bulk
76 Shoot apex inflorescence (after bolting) 0.08 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
77 root - 04% oxygen - 30min -0.10 >More info -0.63 >More info root - 21% oxygen - 30min Original data GEO bulk
78 WT 30μM phosphate 8 hours. 0.14 >More info 0.59 >More info WT control (not supplemented). Original data
79 WT drought -0.21 >More info -0.51 >More info WT control All aerial tissue Original data GEO bulk
80 triploid female excess 0.04 >More info 0.66 >More info tetraploid Original data GEO bulk
81 WT-Dry -0.18 >More info -0.52 >More info WT-CK dehydration treatment 1h Original data
82 short 17-degree- 0.13 >More info 0.56 >More info control short Original data GEO bulk
83 Col BTH 0.02 >More info 0.67 >More info Col rosettes Original data GEO bulk
84 bri1-116 -0.04 >More info 0.73 >More info Col seedling Original data GEO bulk
85 Methyl Jasmonate 1 h -0.14 >More info -0.54 >More info Mock 1 h Original data Basic hormone treatment of seedlings
86 seedling -S Exp 0.10 >More info 0.58 >More info seedling FN Exp seedling Original data
87 L2.5 mutant -0.17 >More info -0.50 >More info Wt Original data GEO bulk
88 root - 08% oxygen - 2h -0.07 >More info -0.59 >More info root - 21% oxygen - 2h Original data GEO bulk
89 root - 08% oxygen - 30min 0.03 >More info -0.68 >More info root - 21% oxygen - 30min Original data GEO bulk
90 Aerobic prt6 0.03 >More info -0.67 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
91 Laer pretreat GA Flg22 1h -0.07 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
92 Whole root - low pH 48H 0.09 >More info 0.53 >More info Whole root - Std pH 48H pH 4.6 for 48 hr Original data GEO bulk
93 CDB1-Knockout 0.11 >More info 0.51 >More info WT Original data GEO bulk
94 ani1 T0.5 0.11 >More info 0.50 >More info WT T0.5 root tissue Original data GEO bulk
95 TNT-seedlings 0.01 >More info -0.61 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
96 35S:PCO1 hypoxia 0.08 >More info 0.50 >More info WT hypoxia whole rosette Original data
97 ANAC102 over-expressor 0.07 >More info 0.50 >More info C24 Original data GEO bulk
98 -Sulfate 24 h 0.02 >More info 0.54 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
99 root - 04% oxygen - 48h -0.06 >More info -0.50 >More info root - 21% oxygen - 48h Original data GEO bulk
100 Col0-PsmES4326-24hpi -0.07 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
101 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
102 ptpks2 0.00 >More info 0.52 >More info Col-WT leaves Original data GEO bulk
103 siliques AtHb1 control -0.01 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
104 ein2 0.01 >More info 0.50 >More info Col-0 Leaves Original data GEO bulk
105 Heat shock optimum -0.15 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
106 IAA7mII over-expressor IAA Treated -0.19 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
107 Leafminer damaged seedlings -0.10 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
108 root - 08% oxygen - 48h 0.08 >More info -0.52 >More info root - 21% oxygen - 48h Original data GEO bulk
109 xyl-grown cell culture- 1h 1mM Suc -0.14 >More info 0.54 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
110 Full C2 T2 0.19 >More info -0.59 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data