4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on 21h-DC3000 hrpA
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "21h-DC3000 hrpA"  Help Download transcriptome of top 30
Score Experiment Correlation from
21h-DC3000 hrpA		 Correlation to
21h-DC3000 hrpA		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 21h-DC3000 hrpA 1.00 >More info 1.00 >More info 21h-DC3000 leaves Original data GEO bulk
2 21h-DC3000 avrRpm1 0.88 >More info 0.89 >More info 21h-DC3000 leaves Original data GEO bulk
3 low CO2 + light -0.71 >More info -0.76 >More info normal CO2 + light Original data GEO bulk
4 DC3000 24h -0.72 >More info -0.75 >More info Mock 24h DC3000 Original data GEO bulk
5 Methyl Jasmonate 1 h -0.66 >More info -0.76 >More info Mock 1 h Original data Basic hormone treatment of seedlings
6 Pst-DC3000(avrRpm1)-4hpi -0.63 >More info -0.76 >More info Pst-DC3000-4hpi Original data GEO bulk
7 HopZ1a treated ulp1c ulp1d -0.73 >More info -0.64 >More info col Original data GEO bulk
8 current injection -0.60 >More info -0.77 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
9 ABA JA 24h -0.74 >More info -0.62 >More info EtOH 24h 24hr Original data GEO bulk
10 high R/FR JA spray -0.68 >More info -0.67 >More info high R/FR mock spray high R/FR JA spray Original data GEO bulk
11 leaf13 -0.61 >More info -0.74 >More info unwounded leaves none Original data GEO bulk
12 sfr6 drought 0.69 >More info 0.65 >More info WT drought All aerial tissue Original data GEO bulk
13 aox1a:rpoTmp MLD stressed 0.73 >More info 0.60 >More info WT(Col0) MLD stressed (control aox1a:rpoTmp) leaf Original data
14 flu -0.73 >More info -0.60 >More info WT Col Original data GEO bulk
15 stn7-1 0.68 >More info 0.65 >More info Col-0 rosette leaves Original data GEO bulk
16 Pto inoculated -0.75 >More info -0.57 >More info col Original data GEO bulk
17 JA 24h -0.71 >More info -0.60 >More info EtOH 24h 24hr Original data GEO bulk
18 WT AntimycinA 3h -0.74 >More info -0.57 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
19 flu over-tAPX -0.70 >More info -0.61 >More info WT Col Original data GEO bulk
20 WT (Col) glucose 0.74 >More info 0.56 >More info WT (Col) glucose seedlings Original data GEO bulk
21 8h-DC3000 avrRpm1 -0.65 >More info -0.65 >More info 8h-DC3000 leaves Original data GEO bulk
22 CMV-A2b mutant -0.57 >More info -0.73 >More info Mock-At Aerial tissues Original data GEO bulk
23 Leafminer locally damaged thaliana seedlings -0.68 >More info -0.61 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
24 WT Shoot-Pi -0.73 >More info -0.56 >More info WT Shoot+Pi shoots Original data GEO bulk
25 HopZ1a treated -0.70 >More info -0.58 >More info col Original data GEO bulk
26 Methyl Jasmonate 3 h -0.49 >More info -0.77 >More info Mock 3 h Original data Basic hormone treatment of seedlings
27 root epidermis and lateral root cap -S 0.58 >More info 0.66 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
28 opr3 JA 2 h -0.56 >More info -0.66 >More info opr3 0 h Original data GEO bulk
29 coi1-PsmES4326-24hpi 0.61 >More info 0.61 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
30 Leaf wounded -0.66 >More info -0.55 >More info Leaf control vegetative leaf Original data GEO bulk
31 Full C2 T2 -0.56 >More info -0.64 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
32 vtc1-1 0.66 >More info 0.54 >More info Col-0 whole plant Original data GEO bulk
33 coronatine -0.67 >More info -0.53 >More info control rosette leaves Original data
34 proline 0.65 >More info 0.55 >More info noneHS Original data GEO bulk
35 bZIP1ko mutant N+Light+ -0.69 >More info -0.51 >More info WT-sib N+Light+ whole plant Original data GEO bulk
36 low CO2 + dark -0.60 >More info -0.60 >More info normal CO2 + light Original data GEO bulk
37 Col-0 +ABA LF -0.70 >More info -0.49 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
38 9 hr Hypoxia IP RNA -0.75 >More info -0.44 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
39 des1 water -0.72 >More info -0.47 >More info WT water water leaf Original data GEO bulk
40 Shoot -K -0.68 >More info -0.50 >More info Control-shoot Original data GEO bulk
41 K starvation (shoot) -0.68 >More info -0.50 >More info Ws (shoot) Original data GEO bulk
42 WT H2O2 3h -0.68 >More info -0.49 >More info WT water 3h 3h_H2O2 Original data GEO bulk
43 Methyl Jasmonate 0.5 h -0.52 >More info -0.65 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
44 penta Alternaria 3dpi -0.66 >More info -0.51 >More info Laer Alternaria 3dpi leaf discs Original data GEO bulk
45 tor mutant glucose -0.70 >More info -0.46 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
46 Col-Luc WT 3h antimycin A -0.70 >More info -0.46 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
47 bak1-3 +Pep2 10h -0.67 >More info -0.48 >More info WT +Pep2 10h Pep2 Original data GEO bulk
48 Prohexadione 3 h -0.74 >More info -0.41 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
49 CMV-WT -0.63 >More info -0.51 >More info Mock-At Aerial tissues Original data GEO bulk
50 35S::MBF1c -0.55 >More info -0.59 >More info control Original data GEO bulk
51 Anoxia -0.64 >More info -0.50 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
52 seed germinating in countinuous light 24h SL 0.47 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
53 root stele -S 0.57 >More info 0.57 >More info root stele pH5.7 Original data GEO bulk
54 anac017-2 AntimycinA 3h 0.67 >More info 0.46 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
55 WT drought -0.64 >More info -0.49 >More info WT control All aerial tissue Original data GEO bulk
56 npr1 sni1 ssn2 0.75 >More info 0.38 >More info npr1 sni1 water water seedling Original data GEO bulk
57 Rsch 8h -0.60 >More info -0.53 >More info Rsch CA Leaves Original data
58 rosette Light Wounded -0.56 >More info -0.57 >More info rosette Light Control Original data GEO bulk
59 Col-0 (t-zeatin 3 h) 0.56 >More info 0.57 >More info Col-0 Original data Cytokinin treatment of seedlings
60 Shoot apex inflorescence (after bolting) 0.48 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
61 npr1-1 SA 0.67 >More info 0.45 >More info Col-0 SA complete seedling Original data
62 Inflorescences Trp1 0.52 >More info 0.60 >More info Inflorescences ler inflorescences Original data GEO bulk
63 ATR1 OE -0.60 >More info -0.52 >More info WT for ATR1/MYB51 Original data GEO bulk
64 Drought Stress 24 h (shoot) -0.69 >More info -0.43 >More info Stress mock 24 h (shoot) Original data Stress treatments
65 root callus inducing medium 96 h 0.72 >More info 0.39 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
66 GST-overexpression seedlings control -0.72 >More info -0.39 >More info WT seedlings control Seedlings Original data
67 phr1 phl1 Shoot-Pi 0.65 >More info 0.45 >More info WT Shoot-Pi shoots Original data GEO bulk
68 DC3000 7h -0.57 >More info -0.52 >More info Mock 7h DC3000 Original data GEO bulk
69 WT 30μM phosphate 8 hours. 0.51 >More info 0.58 >More info WT control (not supplemented). Original data
70 PNO8 12 h -0.69 >More info -0.40 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
71 ARR22-ox (t-zeatin 3 h) -0.72 >More info -0.37 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
72 tunicamycin 0.49 >More info 0.60 >More info DMF Original data GEO bulk
73 Wounding Stress3 h (shoot) -0.54 >More info -0.54 >More info Stress mock 3 h (shoot) Original data Stress treatments
74 plant (Col-0) 4h OPDA -0.52 >More info -0.55 >More info plant (Col-0) 4h control Original data GEO bulk
75 root longitudinal zone-4 -Fe -0.52 >More info -0.55 >More info root longitudinal zone-4 standard Original data GEO bulk
76 1 h Light Total RNA 0.56 >More info 0.51 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
77 OPDA 4 h -0.52 >More info -0.55 >More info Col-0 Original data GEO bulk
78 DFPM -0.65 >More info -0.42 >More info control Original data GEO bulk
79 root callus inducing medium 48 h 0.73 >More info 0.34 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
80 edr1 18 h powdery mildew -0.75 >More info -0.32 >More info Col-0 18 h powdery mildew Original data GEO bulk
81 rdr6-15 0.71 >More info 0.36 >More info Col-0 Original data GEO bulk
82 Osmotic Stress 24 h (shoot) -0.63 >More info -0.43 >More info Stress mock 24 h (shoot) Original data Stress treatments
83 cs26 short-day 0.59 >More info 0.47 >More info Leaves-WT-SD leaf Original data GEO bulk
84 Col-0 flu HL 3h -0.66 >More info -0.40 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
85 ABA DFPM -0.71 >More info -0.35 >More info control Original data GEO bulk
86 CMP 24hr -0.64 >More info -0.42 >More info Acetone 24hr root Original data GEO bulk
87 ABA JA 3h -0.60 >More info -0.46 >More info EtOH 3h 3hr Original data GEO bulk
88 SA 4mM -0.33 >More info -0.73 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
89 Got7 UV -0.43 >More info -0.62 >More info Got7 mock UV seedling Original data
90 rosette leaves fdh -0.61 >More info -0.43 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
91 Col-O high light -0.63 >More info -0.41 >More info Col-O bule light Original data GEO bulk
92 upf3 -0.49 >More info -0.55 >More info WT whole plant Original data GEO bulk
93 atmospheric CO2 high Mg shoot -0.61 >More info -0.42 >More info atmospheric CO2 normal Mg shoot Shoot Original data
94 cat2-long-day 2d 0.74 >More info 0.29 >More info Col0-LD2 transferred to air (400 ppm) for 2 days in long day regime (16h light/8h dark) rosette leaf material Original data GEO bulk
95 3x(p) -0.59 >More info -0.44 >More info 2x two week old seedlings Original data
96 Col ozone 3h -0.54 >More info -0.49 >More info Col clean-air 3h ozone Original data GEO bulk
97 Norflurazon 0.56 >More info 0.46 >More info Col-0 Original data GEO bulk
98 CMP 4hr -0.59 >More info -0.43 >More info Acetone 4hr root Original data GEO bulk
99 miR396b overexpressor -0.55 >More info -0.47 >More info Col-0 vegetative apices together with the leaf primordia Original data
100 root longitudinal zone-1 low sulfur 0.56 >More info 0.46 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
101 Norflurazon 0.56 >More info 0.46 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
102 root callus inducing medium 24h 0.71 >More info 0.31 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
103 Col leaves 120h LT 0.68 >More info 0.33 >More info Col leaves 0h LT 12h 9-11th adult leaves Original data
104 9 hr Hypoxia 1 hr recovery IP RNA -0.67 >More info -0.34 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
105 SHR-GR Time 1H Dex -0.56 >More info -0.44 >More info SHR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
106 Nicotinamide-53hr -0.63 >More info -0.37 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
107 gpa1-4/agb1-2 ozone 2d 0.58 >More info 0.42 >More info Col ozone 2d ozone Original data GEO bulk
108 efr-1 +elf18 10h 0.66 >More info 0.34 >More info WT +elf18 10h elf18 Original data GEO bulk
109 Nicotinamide-57hr -0.67 >More info -0.33 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
110 ein2-1 9 hpi A. brassicicola -0.59 >More info -0.40 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
111 ACC 0.5 h -0.52 >More info -0.47 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
112 Botrytis cinerea 48h -0.55 >More info -0.44 >More info control 48h Original data GEO bulk
113 root stele 40 mM NaCls -0.56 >More info -0.43 >More info root stele Original data GEO bulk
114 ISOXABEN 0.66 >More info 0.33 >More info CON 0.1 mM ISOXABEN Original data GEO bulk
115 ulp1c ulp1d -0.68 >More info -0.31 >More info col Original data GEO bulk
116 Uniconazole 12 h -0.72 >More info -0.27 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
117 IMI 4mM -0.46 >More info -0.53 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
118 JA 3h -0.26 >More info -0.73 >More info EtOH 3h 3hr Original data GEO bulk
119 bHLH122 ox 0.43 >More info 0.56 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
120 hira-protoplast 0.49 >More info 0.50 >More info WT-protoplast protoplast Original data
121 6 h SL WT 0.64 >More info 0.34 >More info 0 h WT seed Original data
122 ABA -0.67 >More info -0.31 >More info control Original data GEO bulk
123 Heat and anoxia -0.66 >More info -0.32 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
124 Col-7 Sucrose 0.75 >More info 0.23 >More info col-7 Original data GEO bulk
125 PstDC3000 48h 0.40 >More info 0.58 >More info WT untreated 48hr leaf Original data GEO bulk
126 red illumination +lincomycin 0.38 >More info 0.60 >More info red illumination -lincomycin Original data GEO bulk
127 Te 8h -0.51 >More info -0.46 >More info Te CA Leaves Original data
128 Ambient CO2 leaf primordia 0.57 >More info 0.40 >More info Control for tissue data leaf primordia Original data
129 Fenclorim 24hr -0.55 >More info -0.42 >More info Acetone 24hr root Original data GEO bulk
130 plant (tga2-5-6) 4h OPDA -0.52 >More info -0.45 >More info plant (tga2-5-6) 4h control Original data GEO bulk
131 Rsch 1d -0.58 >More info -0.39 >More info Rsch CA Leaves Original data
132 Col-0 drought -0.58 >More info -0.39 >More info Col-0 control Original data GEO bulk
133 6 h SL Attim 17-1 1 0.62 >More info 0.35 >More info 0 h Attim 17-1 1 seed Original data
134 bri1-116 0.24 >More info 0.73 >More info Col seedling Original data GEO bulk
135 arp6-10 2h 27 -degree-C 0.58 >More info 0.38 >More info Col-0 2h at 27 ºC whole seedlings Original data GEO bulk
136 Mutant arf2-6 (IAA) 0.60 >More info 0.36 >More info Col (IAA) Original data GEO bulk
137 Van -0.66 >More info -0.30 >More info Col-0 Original data GEO bulk
138 ein2-1 24hpi A. brassicicola -0.64 >More info -0.32 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
139 col-5 DC3000 12h -0.51 >More info -0.45 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
140 axr2 0.68 >More info 0.27 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
141 erf104-ko Flg22 4h -0.39 >More info -0.56 >More info erf104-ko H2O 4h Original data GEO bulk
142 downy mildew cotyledons late stage -0.73 >More info -0.22 >More info mock inoculated Cotyledons Original data GEO bulk
143 SCR-GR Time 1H Dex -0.58 >More info -0.37 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
144 4d red light grown hmr-5 seedlings -0.59 >More info -0.36 >More info 4d red light grown WT(Col-0) seedlings Original data
145 8h-DC3000 hrpA -0.58 >More info -0.37 >More info 8h-DC3000 leaves Original data GEO bulk
146 Fenclorim 4hr -0.51 >More info -0.43 >More info Acetone 4hr root Original data GEO bulk
147 Elevated CO2 expanding leaf -0.62 >More info -0.32 >More info Ambient CO2 expanding leaf expanding leaf Original data
148 ABA+DMTU -0.59 >More info -0.35 >More info control Original data GEO bulk
149 35S:RPS4 eds1-2 8h 0.58 >More info 0.36 >More info 35S:RPS4 8h leaves Original data
150 48 h S WT 0.61 >More info 0.33 >More info 0 h WT seed Original data
151 Osmotic Stress 24 h (root) -0.70 >More info -0.24 >More info Stress mock 24 h (root) Original data Stress treatments
152 wt systemic wounding -0.63 >More info -0.31 >More info wt control leaves Original data GEO bulk
153 RRE2 Chitin -0.54 >More info -0.39 >More info Chitin Original data GEO bulk
154 iron minus 0 h -0.65 >More info -0.28 >More info iron +0 h root Original data GEO bulk
155 SCR-GR Time 12H Dex -0.53 >More info -0.40 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
156 pepr1-1 Pepr2-3 +Pep2 2h 0.53 >More info 0.40 >More info WT +Pep2 2h Pep2 Original data GEO bulk
157 Cor 10h -0.54 >More info -0.39 >More info Mock 10h Cor Original data GEO bulk
158 Col 8h -0.55 >More info -0.38 >More info Col CA Leaves Original data
159 NahG -0.40 >More info -0.53 >More info Col-0 Leaves Original data GEO bulk
160 48 h S Attim 17-1 1 0.58 >More info 0.35 >More info 0 h Attim 17-1 1 seed Original data
161 Atss3 Light4 0.50 >More info 0.43 >More info Atss3 Dark0.5 Original data GEO bulk
162 CHLM overexpression 0.62 >More info 0.31 >More info Col-0 estr green tissue Original data GEO bulk
163 ABA SA 3h -0.55 >More info -0.37 >More info EtOH 3h 3hr Original data GEO bulk
164 sfr3 cold -0.68 >More info -0.24 >More info WT-cold aerial tissues Original data GEO bulk
165 edr1 36 h powdery mildew -0.65 >More info -0.27 >More info Col-0 36 h powdery mildew Original data GEO bulk
166 Flagellin 4 h (leaf) -0.37 >More info -0.55 >More info Mock 4 h (leaf) Original data Elicitor treatments
167 dcl3-1 -0.58 >More info -0.34 >More info Col-0 Original data GEO bulk
168 WT+chitooctaose -0.50 >More info -0.42 >More info WT+water chitooctaose seedlings Original data GEO bulk
169 2hr continuous KCl and MSX control PeR cell -0.42 >More info -0.50 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
170 pho1 -0.67 >More info -0.24 >More info Col2WT Original data GEO bulk
171 smg5-2 -0.54 >More info -0.37 >More info WT whole plant Original data GEO bulk
172 35SpBVR3 -0.55 >More info -0.36 >More info WT Original data GEO bulk
173 ASL9-ox 0.53 >More info 0.38 >More info WT aerial parts of seedlings Original data GEO bulk
174 leaf blade in D -0.51 >More info -0.40 >More info leaf blade in WL leaf blades Original data GEO bulk
175 GST NPP1 4 h (leaf) -0.39 >More info -0.52 >More info Mock 4 h (leaf) Original data Elicitor treatments
176 M6PR transgenic 0mM NaCl -0.58 >More info -0.33 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
177 WT light 0.70 >More info 0.21 >More info WT dark Original data GEO bulk
178 GiantCell Root 0.50 >More info 0.41 >More info Control Root laser captured giant cells Original data GEO bulk
179 Starch sheath 2 days NAA 0.56 >More info 0.34 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
180 Mutant iaa17-6 -0.75 >More info -0.15 >More info Col Original data GEO bulk
181 root callus inducing medium 12 h 0.62 >More info 0.28 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
182 vtc2-1 0.54 >More info 0.36 >More info Col-0 whole plant Original data GEO bulk
183 arp6-10 12 ºC 0.50 >More info 0.40 >More info Col-0 12 ºC whole seedlings Original data GEO bulk
184 Shoot apex transition (before bolting) 0.51 >More info 0.39 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
185 upf1 -0.40 >More info -0.50 >More info WT whole plant Original data GEO bulk
186 6h volatiles Sp. HRO-C48 -0.40 >More info -0.50 >More info 6h untreated whole seedling Original data GEO bulk
187 WT no Pi -0.59 >More info -0.31 >More info WT complete seedlings Original data
188 opr3 JA 8 h -0.60 >More info -0.30 >More info opr3 0 h Original data GEO bulk
189 slr-1 6h NAA -0.70 >More info -0.20 >More info Col-0 6h NAA Original data GEO bulk
190 root longitudinal zone-3 low sulfur 0.56 >More info 0.33 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
191 rpoTmp(line) untreated -0.55 >More info -0.34 >More info WT(Col0) untreated (control rpoTmp) leaf Original data
192 Mutant lfy-12(flower) 0.72 >More info 0.17 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
193 35S:RPS4 eds1-2 24h 0.53 >More info 0.36 >More info 35S:RPS4 24h leaves Original data
194 Root -K -0.61 >More info -0.28 >More info Control-root Original data GEO bulk
195 Col-0 6h NAA 0.73 >More info 0.16 >More info Col-0 6h MOCK Original data GEO bulk
196 Homozygous-AtcesA4 -0.51 >More info -0.38 >More info Heterozygous-AtcesA4 rosette Original data GEO bulk
197 myb3 myb3r4d -0.56 >More info -0.32 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
198 leaf chr11-1chr17-1 -0.54 >More info -0.34 >More info leaf Col-0 leaves Original data GEO bulk
199 GO5; 0h switch to ambient CO2 concentrations; 0.73 >More info 0.15 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
200 Van SA -0.63 >More info -0.25 >More info Col-0 SA Original data GEO bulk
201 9 hr Hypoxia Total RNA -0.61 >More info -0.27 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
202 rosette Dark Wounded -0.35 >More info -0.53 >More info rosette Dark Control Original data GEO bulk
203 dcl2-1 -0.57 >More info -0.31 >More info Col-0 Original data GEO bulk
204 rcf1-1 cold 24h -0.54 >More info -0.33 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
205 Nicotinamide-89hr -0.55 >More info -0.32 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
206 aphid infested -0.53 >More info -0.34 >More info control aphid infested Leaves Original data GEO bulk
207 coi1-16 ein2 sid2 ctrl 0.54 >More info 0.33 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
208 aphid infested -0.53 >More info -0.34 >More info CTR Original data GEO bulk
209 Wounding Stress3 h (root) -0.51 >More info -0.36 >More info Stress mock 3 h (root) Original data Stress treatments
210 NAA 6h 0.71 >More info 0.16 >More info before treatment NAA root Original data GEO bulk
211 cpr5scv1 -0.60 >More info -0.27 >More info WT(COL) Original data GEO bulk
212 9 hr Hypoxia 1 hr recovery Total RNA -0.63 >More info -0.24 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
213 K starvation (root) -0.61 >More info -0.26 >More info Ws (root) Original data GEO bulk
214 atgsnor1-1-avrB-6h -0.52 >More info -0.35 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
215 6h +Pi 0.62 >More info 0.25 >More info 6h -Pi root Original data GEO bulk
216 root endodermis and quiescent center pH4.6 0.55 >More info 0.31 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
217 vte2-1 1d vernalization -0.56 >More info -0.30 >More info WT 1d vernalization Original data GEO bulk
218 Col-0 C2H4 24h -0.57 >More info -0.29 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
219 WT polysome 0.51 >More info 0.34 >More info WT non-polysome Original data GEO bulk
220 bZIP1ko mutant N+Light- -0.57 >More info -0.28 >More info WT-sib N+Light- whole plant Original data GEO bulk
221 35S:RPS4 rrs1-11 8h 0.59 >More info 0.26 >More info 35S:RPS4 8h leaves Original data
222 KO-nudx19 leaves -0.50 >More info -0.34 >More info WT leaves rosette leaves Original data
223 smg7b-1 -0.52 >More info -0.32 >More info WT whole plant Original data GEO bulk
224 CabpBVR2 -0.54 >More info -0.30 >More info WT Original data GEO bulk
225 seedling 24h after Gamma atm-1 0.65 >More info 0.19 >More info seedling day 2 unirradiated atm-1 24h Original data
226 SLWF infested -0.55 >More info -0.29 >More info SLWF uninfested rosette tissue Original data GEO bulk
227 GST 4 h (leaf) -0.33 >More info -0.51 >More info Mock 4 h (leaf) Original data Elicitor treatments
228 embryo proper linear-cotyledon 0.57 >More info 0.27 >More info whole seeds linear-cotyledon Original data GEO bulk
229 ABA -0.62 >More info -0.22 >More info control Original data GEO bulk
230 JA -0.30 >More info -0.53 >More info Col-0 mock Whole seedling Original data GEO bulk
231 gapcp1gapcp2 ABA -0.27 >More info -0.56 >More info WT ABA ABA seedling Original data GEO bulk
232 PRR5-VP 18h light on 0.62 >More info 0.21 >More info WT 18h light on whole plant Original data GEO bulk
233 ADD3 0.50 >More info 0.32 >More info WT aerial part Original data GEO bulk
234 ABA 3 h -0.51 >More info -0.31 >More info Mock 3 h Original data Basic hormone treatment of seedlings
235 green tissue gl3 egl3 0.53 >More info 0.29 >More info green tissue WT L. er Original data GEO bulk
236 Protoplast Induced -0.30 >More info -0.52 >More info Uninduced Original data GEO bulk
237 opr3 JA 0.5 h -0.01 >More info -0.81 >More info opr3 0 h Original data GEO bulk
238 SHR-GR Time 12H Dex 0.57 >More info 0.25 >More info SHR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
239 PRR5-VP 6h light on 0.60 >More info 0.22 >More info WT 6h light on whole plant Original data GEO bulk
240 ABA 24h -0.57 >More info -0.25 >More info EtOH 24h 24hr Original data GEO bulk
241 fls1-3 -0.23 >More info -0.59 >More info Col-0 Rosette leaves Original data
242 Nicotinamide-85hr -0.55 >More info -0.26 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
243 Shoot -P -0.52 >More info -0.29 >More info Shoot Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
244 pip3 At2g19270 RNAi 24 -0.65 >More info -0.16 >More info Nd-1 whole plant Original data GEO bulk
245 gai MeJA 1h 0.76 >More info 0.05 >More info Laer MeJA 1h leaf discs Original data GEO bulk
246 nd-1 V. longisporum-inoculated 48 hpi -0.50 >More info -0.31 >More info Col-0 V. longisporum-inoculated 48 hpi Pool of >50 individual roots Original data
247 E2Fa-Dpa 0.54 >More info 0.27 >More info WT Original data GEO bulk
248 arr10 arr12 0.62 >More info 0.19 >More info DMSO--WT DMSO roots Original data GEO bulk
249 cpr5 -0.54 >More info -0.27 >More info WT(COL) Original data GEO bulk
250 Cycloheximide 3 h -0.52 >More info -0.29 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
251 Salt Stress 24 h (root) -0.56 >More info -0.25 >More info Stress mock 24 h (root) Original data Stress treatments
252 17 0h total 0.50 >More info 0.30 >More info 27 0h total whole seedlings floating on MS medium Original data
253 cov1 cov2 stem Base -0.59 >More info -0.21 >More info WT stem Base stem Base Original data GEO bulk
254 35:SUB1C -0.56 >More info -0.23 >More info WT whole seedling Original data GEO bulk
255 anac017-1 H2O2 3h 0.51 >More info 0.28 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
256 leaf rlt1-1rlt2-1 0.52 >More info 0.27 >More info leaf Col-0 leaf Original data GEO bulk
257 mkk1 control rep 0.59 >More info 0.20 >More info Col-0 Time 0 rep Original data GEO bulk
258 seedling 1.5h after HZE atm-1 -0.53 >More info -0.26 >More info seedling day 1 unirradiated atm-1 1.5h Original data
259 msg2 0.54 >More info 0.25 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
260 rdr6-15 0.20 >More info 0.59 >More info Col-0 plant inflorescence Original data
261 pepr1-1 Pepr2-3 +Pep2 10h 0.57 >More info 0.22 >More info WT +Pep2 10h Pep2 Original data GEO bulk
262 Salt Stress 24 h (shoot) -0.54 >More info -0.24 >More info Stress mock 24 h (shoot) Original data Stress treatments
263 BLM -0.60 >More info -0.18 >More info CK BLM seedling Original data
264 Mutant ap2-6(flower) 0.64 >More info 0.14 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
265 Differentiation 36h 0.50 >More info 0.28 >More info Differentiation 0h leaves Original data
266 24h SL Attim 17-1 1 0.53 >More info 0.25 >More info 0 h Attim 17-1 1 seed Original data
267 seedling h S Exp 0.53 >More info 0.25 >More info seedling -S Exp seedling Original data
268 Laer Flg22(Agrobacterium) 2h 0.55 >More info 0.23 >More info Laer Control leaf discs Original data GEO bulk
269 Differentiation 24h 0.51 >More info 0.27 >More info Differentiation 0h leaves Original data
270 4h decapitation 0.56 >More info 0.22 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
271 root longitudinal zone-4 low sulfur 0.63 >More info 0.15 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
272 vtc2 day 7 induction 0.57 >More info 0.21 >More info WT day 7 induction day 7 induction of somatic embryogenesis Original data GEO bulk
273 fus3-3 12 DAF Seed 0.62 >More info 0.15 >More info WT (Col-0) 12 DAF Seed-3 developing seeds dissected from sliques Original data
274 phr1 Root-Pi -0.64 >More info -0.13 >More info WT Root+Pi roots Original data GEO bulk
275 axr2-BR 0.64 >More info 0.13 >More info BR BR dark-grown seedlings Original data GEO bulk
276 LTN008-2 aza-dc -0.51 >More info -0.25 >More info LTN012-2 Mock Original data
277 noa1-2 0.54 >More info 0.22 >More info Col-0 whole seedlings Original data GEO bulk
278 dense canopy -0.55 >More info -0.21 >More info single (control) petiole Original data GEO bulk
279 cov1 cov2 stem Top 0.52 >More info 0.24 >More info WT stem Top stem Top Original data GEO bulk
280 Ler 10C long-day -0.50 >More info -0.25 >More info Ler 20C long-day seeds Original data GEO bulk
281 roots bhlh100/101 0uM Fe -0.52 >More info -0.23 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
282 cngc1 0.53 >More info 0.22 >More info Ws-2 Seedlings Original data GEO bulk
283 24h volatiles Sp. HRO-C48 0.54 >More info 0.21 >More info 24h untreated whole seedling Original data GEO bulk
284 P35S:rGRF3 -0.51 >More info -0.24 >More info WS Original data GEO bulk
285 ced1 0.53 >More info 0.22 >More info WT PEG 6hr seedlings Original data GEO bulk
286 php -0.51 >More info -0.23 >More info WT Original data GEO bulk
287 4d red light grown hmr-22 seedlings -0.53 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
288 penta mutant (higher order mutant) -0.51 >More info -0.23 >More info col control (higher order mutant) Original data GEO bulk
289 mpk6-ko Flg22 4h -0.20 >More info -0.54 >More info mpk6-ko H2O 4h Original data GEO bulk
290 agb1 -ABA LF -0.16 >More info -0.58 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
291 abi4-102 (I) 0.57 >More info 0.16 >More info Col (I) rosette Original data GEO bulk
292 Col PSTDC3000 24h -0.60 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
293 WT Root-Pi -0.60 >More info -0.13 >More info WT Root+Pi roots Original data GEO bulk
294 UV Stress 24 h (root) -0.59 >More info -0.14 >More info Stress mock 24 h (root) Original data Stress treatments
295 24h SL WT 0.51 >More info 0.22 >More info 0 h WT seed Original data
296 BLM+INA -0.53 >More info -0.20 >More info CK BLM and INA seedling Original data
297 Prohexadione 12 h -0.60 >More info -0.13 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
298 Mutant ap3-6(flower) 0.59 >More info 0.14 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
299 12h volatiles Sp. HRO-C48 0.51 >More info 0.21 >More info 12h untreated whole seedling Original data GEO bulk
300 Bay-0-30min IAA -0.54 >More info -0.17 >More info Bay-0-0h IAA whole plant Original data GEO bulk
301 Nicotinamide-81hr -0.50 >More info -0.21 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
302 Mutant ap1-15(flower) 0.59 >More info 0.12 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
303 Nuclear GSH3 0.56 >More info 0.14 >More info Cytoplasmic GSH3 Media change Original data GEO bulk
304 csn5 (csn5a-2 csn5b) dark 0.54 >More info 0.16 >More info WT dark Original data GEO bulk
305 pip3 At2g19270 RNAi 32 -0.52 >More info -0.18 >More info Nd-1 whole plant Original data GEO bulk
306 Hypoxic e1 ate 0.58 >More info 0.12 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
307 whole roots 140 mM NaCl 30 minutes -0.16 >More info -0.53 >More info whole roots standard Original data GEO bulk
308 Control KNO3 roots - 8hours -0.51 >More info -0.18 >More info Control KCl roots - 8hours 5mM KNO3 on both sides for 8 hours roots Original data GEO bulk
309 P35S:rGRF1 0.59 >More info 0.10 >More info Col-0 Original data GEO bulk
310 stele auxin 0.50 >More info 0.19 >More info stele control 5 uM indole-3-acetic acid stele Original data GEO bulk
311 2 h EST 0.64 >More info 0.04 >More info mock 2 h EST seedling Original data GEO bulk
312 sps1 0.51 >More info 0.17 >More info WT seedling Original data GEO bulk
313 Laer pretreat JA Flg22 0h -0.60 >More info -0.08 >More info Laer pretreat water control leaf discs Original data GEO bulk
314 MPK6 ox Shoot Hypoxia -0.57 >More info -0.11 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
315 abi3-6 12 DAF Seed 0.55 >More info 0.12 >More info WT (Col-0) 12 DAF Seed-3 developing seeds dissected from sliques Original data
316 camta3-1 0.51 >More info 0.16 >More info WT Original data GEO bulk
317 tfl1-1-16ºC -0.51 >More info -0.16 >More info WT-16ºC Original data GEO bulk
318 embryo proper pre-globular 0.52 >More info 0.15 >More info whole seed sections pre-globular Original data GEO bulk
319 35S:RPS4 rrs1-11 2h -0.58 >More info -0.08 >More info 35S:RPS4 2h leaves Original data
320 rdo4 siliques 0.51 >More info 0.14 >More info WT Ler siliques Original data GEO bulk
321 Heat shock optimum -0.00 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
322 IAA 4h 0.57 >More info 0.08 >More info control 4h root Original data GEO bulk
323 lateral root cap-columella pBRN2 3h BL -0.53 >More info -0.10 >More info lateral root cap-columella pBRN2 0h BL brassinosteroid root Original data
324 Ambient CO2 LIMITING N DAY -0.51 >More info -0.12 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
325 SND1 12h -0.62 >More info 0.00 >More info wt 12h Original data GEO bulk
326 opr3 OPDA 22 h -0.58 >More info -0.03 >More info opr3 0 h Original data GEO bulk
327 M6PR transgenic 100mM NaCl -0.54 >More info -0.06 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk
328 estradiole-induced ANAC059 0.50 >More info 0.10 >More info transgenic (empty vector inducible system) Original data GEO bulk
329 M6PR transgenic leaf 100mM NaCl -0.53 >More info -0.06 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
330 roots IAA 0.62 >More info -0.03 >More info roots mock Original data GEO bulk
331 Col leaves 48h LT 0.56 >More info 0.02 >More info Col leaves 0h LT 48h 9-11th adult leaves Original data
332 TaFLS overexpression line (OE1) 0.65 >More info -0.07 >More info Col-0 Rosette leaves Original data
333 etiolated cop1 0.53 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
334 Col BTH -0.10 >More info 0.67 >More info Col rosettes Original data GEO bulk
335 A2hsfa1-ox in quadruple mutant 0.57 >More info -0.00 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
336 AtMYB30-as 90-105 min Xanthomonas -0.00 >More info -0.56 >More info WT 90-105 min Xanthomonas Original data GEO bulk
337 IPT8 induced 12h -0.59 >More info 0.03 >More info Control 12h 12 hours primary root tip (5 mm) Original data GEO bulk
338 IAA 2h 0.58 >More info -0.02 >More info control 2h root Original data GEO bulk
339 35S::RSL4 -0.53 >More info -0.02 >More info Col-0 Control root Original data GEO bulk
340 CCA1-ox 6am non-polysomal 0.04 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
341 gtl1 -0.57 >More info 0.02 >More info WT trichome Original data GEO bulk
342 gtl1-1 -0.57 >More info 0.02 >More info WT trichome Original data GEO bulk
343 intact root auxin 0.52 >More info 0.02 >More info intact root control 5 uM indole-3-acetic acid whole root Original data GEO bulk
344 lec1-1 12 DAF Seed 0.52 >More info 0.02 >More info WT (WS) 12 DAF Seed developing seeds dissected from sliques Original data
345 SCR-GR Time 3H Dex -0.56 >More info 0.03 >More info SCR-GR Time 0H Dex Dex media for 3 hours Original data GEO bulk
346 protoplasts T2 [flg22] 0.53 >More info -0.01 >More info protoplasts T2 [CPK] mesophyll protoplasts Original data GEO bulk
347 Total RNA 35S:HF-RPL18 cold -0.50 >More info -0.02 >More info Total RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
348 root - 04% oxygen - 30min 0.01 >More info -0.53 >More info root - 21% oxygen - 30min Original data GEO bulk
349 stele pSHR 0h BL 0.52 >More info -0.01 >More info WR 35S 0h BL brassinosteroid root Original data
350 VND6 12h -0.54 >More info 0.05 >More info wt 12h Original data GEO bulk
351 swn-7 0.54 >More info -0.05 >More info Col whole plant Original data GEO bulk
352 SA Treated -0.57 >More info 0.08 >More info Water Original data GEO bulk
353 aux1 mutant roots air -0.52 >More info 0.04 >More info roots IAA Original data GEO bulk
354 Mutant arf2-6 0.51 >More info -0.03 >More info Col Original data GEO bulk
355 IAA7mII over-expressor IAA Treated -0.24 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
356 Laer pretreat GA Flg22 1h -0.27 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
357 SCR-GR Time 6H Dex -0.63 >More info 0.21 >More info SCR-GR Time 0H Dex Dex media for 6 hours Original data GEO bulk
358 Col leaf 100mM NaCl 0.57 >More info -0.17 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
359 Col leaf 100mM NaCl 0.57 >More info -0.17 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
360 Col 100mM NaCl 0.57 >More info -0.17 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
361 cat2-long-day 4d 0.61 >More info -0.22 >More info Col0-LD4 transferred to air (400 ppm) for 4 days in long day regime (16h light/8h dark) rosette leaf material Original data GEO bulk
362 Polysomal RNA 35S:HF-RPL18 cold -0.56 >More info 0.19 >More info Polysomal RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
363 Col(gl) 0mM NaCl 0.50 >More info -0.17 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
364 Col(gl) leaf 0mM NaCl 0.50 >More info -0.17 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
365 spx1 spx2 resupplied Pi 4h -0.53 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
366 siliques AtHb1 control -0.30 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
367 Leafminer damaged seedlings -0.68 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
368 Col0-PsmES4326-24hpi -0.71 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk