4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on pip3 At2g19270 RNAi 24
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Score Experiment Correlation from
pip3 At2g19270 RNAi 24		 Correlation to
pip3 At2g19270 RNAi 24		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 pip3 At2g19270 RNAi 24 1.00 >More info 1.00 >More info Nd-1 whole plant Original data GEO bulk
2 pip3 At2g19270 RNAi 32 0.92 >More info 0.91 >More info Nd-1 whole plant Original data GEO bulk
3 WT Na2S 0.78 >More info 0.81 >More info WT water Na2S leaf Original data GEO bulk
4 seedling 12h after Gamma atm-1 -0.76 >More info -0.80 >More info seedling day 1 unirradiated atm-1 12h Original data
5 dde2-2 24hpi A. brassicicola 0.74 >More info 0.78 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
6 ein2-1 24hpi A. brassicicola 0.73 >More info 0.75 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
7 seedling 12h after Gamma WT -0.74 >More info -0.73 >More info seedling day 1 unirradiated WT 12h Original data
8 seedling 12h after HZE atm-1 -0.72 >More info -0.75 >More info seedling day 1 unirradiated atm-1 12h Original data
9 seedling 6h after Gamma atm-1 -0.75 >More info -0.71 >More info seedling day 1 unirradiated atm-1 6h Original data
10 Atss3 Light1 0.70 >More info 0.76 >More info Atss3 Dark0.5 Original data GEO bulk
11 08h Col-0 -0.68 >More info -0.78 >More info 00h Col-0 Original data GEO bulk
12 seedling 6h after HZE atm-1 -0.73 >More info -0.71 >More info seedling day 1 unirradiated atm-1 6h Original data
13 des1 water 0.75 >More info 0.66 >More info WT water water leaf Original data GEO bulk
14 sid2-2 24hpi A. brassicicola 0.70 >More info 0.71 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
15 16h Col-0 -0.65 >More info -0.74 >More info 00h Col-0 Original data GEO bulk
16 abi4-102 (I) -0.70 >More info -0.65 >More info Col (I) rosette Original data GEO bulk
17 60m light 0.59 >More info 0.71 >More info before light whole seedlings Original data GEO bulk
18 20h Col-0 -0.62 >More info -0.67 >More info 00h Col-0 Original data GEO bulk
19 vtc2 (I) -0.71 >More info -0.58 >More info Col (I) rosette Original data GEO bulk
20 30m light 0.53 >More info 0.76 >More info before light whole seedlings Original data GEO bulk
21 cca1-lhy 30m light -0.63 >More info -0.65 >More info 30m light whole seedlings Original data GEO bulk
22 aerial organ callus inducing medium 12 h -0.65 >More info -0.61 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
23 abi4 vtc2 (I) -0.67 >More info -0.57 >More info Col (I) rosette Original data GEO bulk
24 Laer Flg22(Agrobacterium) 2h -0.52 >More info -0.71 >More info Laer Control leaf discs Original data GEO bulk
25 WT Atum 2h -0.58 >More info -0.63 >More info WT 0h Leaf tissue Original data GEO bulk
26 Col(gl) 0mM NaCl -0.64 >More info -0.57 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
27 Col(gl) leaf 0mM NaCl -0.64 >More info -0.57 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
28 toc1-1-85hr 0.52 >More info 0.68 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
29 Mutant lwd1_lwd2 -0.51 >More info -0.68 >More info Wildtype for phy mutants Original data GEO bulk
30 cca1-lhy 60m light -0.57 >More info -0.62 >More info 60m light whole seedlings Original data GEO bulk
31 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 -0.51 >More info -0.68 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
32 rdr1-1 0.64 >More info 0.55 >More info Col-0 Original data GEO bulk
33 WT +Pep2 10h -0.67 >More info -0.52 >More info WT untreated Pep2 Original data GEO bulk
34 Nicotinamide-57hr 0.62 >More info 0.56 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
35 lht1 untreated 0.64 >More info 0.53 >More info WT untreated untreated leaf Original data GEO bulk
36 IAA/inhibitor A Treated 0.67 >More info 0.48 >More info IAA Treated Original data GEO bulk
37 Night Time Treatment 0.56 >More info 0.59 >More info Night Time Control 1hr white light pulse aerial rosette Original data
38 2d dark-grown WT(Col-0)/1 hr red light 0.60 >More info 0.55 >More info 2d dark-grown WT seedling Original data GEO bulk
39 seedling 6h after HZE WT -0.69 >More info -0.43 >More info seedling day 1 unirradiated WT 6h Original data
40 vte1-1 3d vernalization 0.57 >More info 0.54 >More info WT 3d vernalization Original data GEO bulk
41 SOS1 0mM NaCl -0.62 >More info -0.49 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
42 FarRed Light 4 h 0.52 >More info 0.59 >More info White Light 4 h Original data Light treatments
43 12h Col-0 -0.53 >More info -0.58 >More info 00h Col-0 Original data GEO bulk
44 rdr6-15 -0.64 >More info -0.47 >More info Col-0 Original data GEO bulk
45 Nicotinamide-61hr 0.53 >More info 0.57 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
46 sdg8-2 mutant 0.66 >More info 0.44 >More info wild type leaf Original data GEO bulk
47 seedling 12h after HZE WT -0.64 >More info -0.45 >More info seedling day 1 unirradiated WT 12h Original data
48 anti-sense for AtAOX1a -0.51 >More info -0.58 >More info WT Original data GEO bulk
49 toc1-1-89hr 0.51 >More info 0.58 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
50 mutant acs6E (single mutant) 0.57 >More info 0.51 >More info col control (single mutant) Original data GEO bulk
51 sfr6 cold -0.49 >More info -0.59 >More info WT cold All aerial tissue Original data GEO bulk
52 hexa mutant (higher order mutant) -0.65 >More info -0.42 >More info col control (higher order mutant) Original data GEO bulk
53 mutant acs2B (single mutant) 0.59 >More info 0.48 >More info col control (single mutant) Original data GEO bulk
54 Red/FR Light 4 h -0.50 >More info -0.56 >More info FarRed Light 4 h Original data Light treatments
55 WT cold 12 h -0.51 >More info -0.55 >More info WT cold 0h GSM955987 seedlings Original data GEO bulk
56 M6PR transgenic leaf 0mM NaCl -0.60 >More info -0.46 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
57 OsRLCK253 expressing 0.51 >More info 0.54 >More info WT seedlings Original data GEO bulk
58 downy mildew cotyledons late stage 0.53 >More info 0.52 >More info mock inoculated Cotyledons Original data GEO bulk
59 WT NAA 2h -0.56 >More info -0.48 >More info WT 0h Leaf tissue Original data GEO bulk
60 Nicotinamide-81hr 0.49 >More info 0.55 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
61 D2O -0.51 >More info -0.52 >More info H2O seedling Original data GEO bulk
62 lht1 PstDC3000 48h 0.61 >More info 0.42 >More info PstDC3000 48h 48hr leaf Original data GEO bulk
63 ABA 3 h 0.43 >More info 0.60 >More info Mock 3 h Original data Basic hormone treatment of seedlings
64 WT +elf18 10h -0.59 >More info -0.43 >More info WT untreated elf18 Original data GEO bulk
65 Heat no recovery 0.56 >More info 0.46 >More info Mock no recovery seedling Original data GEO bulk
66 miR mutant (higher order mutant) -0.63 >More info -0.39 >More info col control (higher order mutant) Original data GEO bulk
67 Blue Light 4 h 0.41 >More info 0.61 >More info White Light 4 h Original data Light treatments
68 24h volatiles Sm. R3089 -0.46 >More info -0.56 >More info 24h untreated whole seedling Original data GEO bulk
69 toc1-1-65hr 0.51 >More info 0.50 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
70 WT-Dry 0.64 >More info 0.37 >More info WT-CK dehydration treatment 1h Original data
71 dor control 0.64 >More info 0.37 >More info WT control Original data GEO bulk
72 hepta mutant (higher order mutant) -0.61 >More info -0.40 >More info col control (higher order mutant) Original data GEO bulk
73 npr1 -0.43 >More info -0.58 >More info WT(COL) Original data GEO bulk
74 cca1-lhy 15m light -0.51 >More info -0.49 >More info 15m light whole seedlings Original data GEO bulk
75 Leafminer systemically damaged thaliana seedlings -0.50 >More info -0.50 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
76 CBF3 0mM NaCl -0.58 >More info -0.41 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
77 Nicotinamide-85hr 0.51 >More info 0.48 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
78 hyl1 -0.59 >More info -0.40 >More info Col-0 Original data GEO bulk
79 inhibitor A Treated 0.65 >More info 0.34 >More info Negative Control Original data GEO bulk
80 pip3 At2g19270 TDNA 6h-1 0.59 >More info 0.39 >More info Col-0 whole plant Original data GEO bulk
81 IAA/inhibitor B Treated 0.56 >More info 0.42 >More info IAA Treated Original data GEO bulk
82 Dark 6h ivd -0.59 >More info -0.39 >More info 0h ivd Original data
83 Col leaf 100mM NaCl -0.48 >More info -0.50 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
84 Col leaf 100mM NaCl -0.48 >More info -0.50 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
85 Cd 18h root 0.45 >More info 0.53 >More info WT-Untreated Root Original data GEO bulk
86 Col 100mM NaCl -0.48 >More info -0.50 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
87 Wt-BA-sample -0.44 >More info -0.54 >More info Wt-dmso-sample seedling Original data
88 M6PR transgenic 0mM NaCl -0.61 >More info -0.36 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
89 npr1 sni1 ssn2 SA -0.52 >More info -0.45 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
90 ga1-3 SCL3OE 0.53 >More info 0.44 >More info ga1-3 whole root Original data
91 ABA 1 h 0.34 >More info 0.63 >More info Mock 1 h Original data Basic hormone treatment of seedlings
92 Atss3 Dark8 0.46 >More info 0.51 >More info Atss3 Dark0.5 Original data GEO bulk
93 penta mutant (higher order mutant) -0.47 >More info -0.50 >More info col control (higher order mutant) Original data GEO bulk
94 WT Red light 1h 0.45 >More info 0.52 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
95 PsJN -0.44 >More info -0.53 >More info Control inoculated with the PGPR bacterial model Burkholderia phytofirmans PsJN Plantlet Original data GEO bulk
96 seedling 6h after Gamma WT -0.67 >More info -0.29 >More info seedling day 1 unirradiated WT 6h Original data
97 shl-2 Pool -0.50 >More info -0.46 >More info Ler Pool seedling Original data GEO bulk
98 MIL4 ox -0.54 >More info -0.42 >More info Col Original data GEO bulk
99 Col-0 +lincomycin -0.54 >More info -0.41 >More info Col-0 -lincomycin Original data GEO bulk
100 toc1-1-77hr -0.53 >More info -0.42 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
101 hsfa2 KO -0.60 >More info -0.35 >More info WT (Col-0) whole seedling Original data GEO bulk
102 ABA 0.40 >More info 0.54 >More info control Original data GEO bulk
103 dcl3-1 0.53 >More info 0.41 >More info Col-0 Original data GEO bulk
104 WT 90-105 min Xanthomonas 0.59 >More info 0.35 >More info WT T0 Original data GEO bulk
105 Red Light 4 h -0.29 >More info -0.65 >More info White Light 4 h Original data Light treatments
106 Col-0 drought 0.50 >More info 0.43 >More info Col-0 control Original data GEO bulk
107 sfr2 control 0.50 >More info 0.43 >More info WT control All aerial tissue Original data GEO bulk
108 P-chlorophenoxy- isobutyric acid 3 h 0.34 >More info 0.59 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
109 Light 4h polysome-bound 0.43 >More info 0.50 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
110 dcl2-1 0.58 >More info 0.34 >More info Col-0 Original data GEO bulk
111 current injection 0.54 >More info 0.37 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
112 ABA JA 3h 0.37 >More info 0.54 >More info EtOH 3h 3hr Original data GEO bulk
113 SOS1 100mM NaCl -0.60 >More info -0.31 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk
114 Dark 6h wt -0.60 >More info -0.31 >More info 0h wt Original data
115 seedling 1.5h after HZE atm-1 -0.52 >More info -0.38 >More info seedling day 1 unirradiated atm-1 1.5h Original data
116 3x(m) -0.36 >More info -0.54 >More info 2x two week old seedlings Original data
117 OH1 -0.55 >More info -0.34 >More info Col-0 leaves Original data GEO bulk
118 ms1 unpollinated 0.54 >More info 0.35 >More info WT 8h-pollinated pistil Original data GEO bulk
119 MYB51 OE -0.54 >More info -0.35 >More info WT for ATR1/MYB51 Original data GEO bulk
120 swn-7 -0.50 >More info -0.39 >More info Col whole plant Original data GEO bulk
121 MIL4 ox BTH -0.51 >More info -0.37 >More info Col BTH Original data GEO bulk
122 hst5 -0.56 >More info -0.31 >More info Col-0 Original data GEO bulk
123 ABA SA 3h 0.33 >More info 0.54 >More info EtOH 3h 3hr Original data GEO bulk
124 rdr2-1 0.59 >More info 0.28 >More info Col-0 Original data GEO bulk
125 FarRed Light 45min -0.21 >More info -0.66 >More info White Light 45min Original data Light treatments
126 essp4/sdg8-5 mutant 0.57 >More info 0.30 >More info wild type leaf Original data GEO bulk
127 WT cold 24h -0.33 >More info -0.53 >More info WT cold 0h cold at 4°C seedlings Original data GEO bulk
128 TNT-seedlings 0.24 >More info 0.62 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
129 root BA 12h 0.36 >More info 0.50 >More info root control 12h boron (5mM) root Original data GEO bulk
130 root longitudinal zone-4 NaCl 0.24 >More info 0.61 >More info root longitudinal zone-4 Original data GEO bulk
131 mil4 sid2 -0.50 >More info -0.34 >More info Col rosettes Original data GEO bulk
132 Dark 6h hml -0.56 >More info -0.28 >More info 0h hml Original data
133 Red/FR Light45min 0.04 >More info 0.78 >More info FarRed Light 45min Original data Light treatments
134 Col-0 48 hpi -0.50 >More info -0.31 >More info Col-0 uninoculated Original data GEO bulk
135 essp3/brm5 mutant 0.52 >More info 0.29 >More info WT (Pro-beta-CG;GUS) Original data GEO bulk
136 21h-DC3000 hrpA -0.16 >More info -0.65 >More info 21h-DC3000 leaves Original data GEO bulk
137 dsr1 -0.18 >More info -0.62 >More info WT mock Whole seedling Original data GEO bulk
138 toc1-1-73hr -0.61 >More info -0.17 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
139 Dry late day 0.27 >More info 0.50 >More info Wet late day water-limited whole rosette Original data GEO bulk
140 fil-8 yab3-2 0.21 >More info 0.56 >More info wt Apices Original data GEO bulk
141 21h-DC3000 avrRpm1 -0.20 >More info -0.56 >More info 21h-DC3000 leaves Original data GEO bulk
142 NaCl Col 0.20 >More info 0.55 >More info Col Original data GEO bulk
143 IAA7mII over-expressor IAA Treated 0.05 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
144 red illumination +lincomycin -0.19 >More info -0.55 >More info red illumination -lincomycin Original data GEO bulk
145 NJ15 0.09 >More info 0.65 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
146 Prohexadione 12 h 0.23 >More info 0.50 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
147 CBF3 100mM NaCl -0.55 >More info -0.16 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk
148 hsfa2 KO heat shock -0.51 >More info -0.20 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
149 ANAC102 knock-out low oxygen -0.18 >More info -0.53 >More info Col-0 low oxygen Original data GEO bulk
150 Roots Cd -0.18 >More info -0.53 >More info Roots control Cd Root Original data GEO bulk
151 WT (Col-0) inflorescence well-watered day 3 0.55 >More info 0.15 >More info WT (Col-0) inflorescence well-watered day 0 Unopen flower buds Original data GEO bulk
152 Col-0 mbs1-1 HL 3h 0.51 >More info 0.19 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
153 ABA SA 24h 0.12 >More info 0.58 >More info EtOH 24h 24hr Original data GEO bulk
154 abi4-102 -lincomycin -0.51 >More info -0.18 >More info Col-0 -lincomycin Original data GEO bulk
155 Col(gl) leaf 100mM NaCl -0.51 >More info -0.17 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
156 Col(gl) 100mM NaCl -0.51 >More info -0.17 >More info Col 100mM NaCl 100mM NaCl leaf Original data GEO bulk
157 ABA JA 24h 0.12 >More info 0.55 >More info EtOH 24h 24hr Original data GEO bulk
158 Col0-PsmES4326-24hpi 0.04 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
159 vtc2-1 -0.11 >More info -0.54 >More info Col-0 whole plant Original data GEO bulk
160 M6PR transgenic 100mM NaCl -0.53 >More info -0.11 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk
161 Laer pretreat JA Flg22 0h 0.12 >More info 0.52 >More info Laer pretreat water control leaf discs Original data GEO bulk
162 seed germinating in countinuous light 24h SL -0.05 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
163 P.syringae vir 4 h (leaf) 0.05 >More info -0.66 >More info Mock 4 h (leaf) Original data Elicitor treatments
164 root - 08% oxygen - 48h -0.07 >More info -0.53 >More info root - 21% oxygen - 48h Original data GEO bulk
165 bri1-116 -0.13 >More info 0.73 >More info Col seedling Original data GEO bulk
166 cpctry 0.04 >More info 0.55 >More info Col Original data GEO bulk
167 Cs root 0.06 >More info 0.52 >More info control root Original data GEO bulk
168 A2hsfa1-ox in quadruple mutant -0.53 >More info -0.04 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
169 siliques AtHb1 control 0.03 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
170 Col BTH -0.13 >More info 0.67 >More info Col rosettes Original data GEO bulk
171 Shoot apex inflorescence (after bolting) -0.12 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
172 ahg1-1 -0.04 >More info 0.56 >More info ABA control Original data GEO bulk
173 seedling 3h after HZE WT -0.53 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
174 toc1-1-53hr -0.55 >More info 0.04 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
175 Polysomal RNA 35S:AtCSP1-FH1 0.03 >More info -0.54 >More info Polysomal RNA csp1 12h non-stress rosettes Original data GEO bulk
176 Chemically -0.14 >More info 0.64 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
177 ara1/2mut 0.09 >More info -0.56 >More info Col-3 Original data GEO bulk
178 Mock pft1 leaf 0.52 >More info -0.05 >More info Mock Col-0 leaf water leaf Original data GEO bulk
179 CCA1-ox 6am non-polysomal -0.04 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
180 seedling SPL13 -0.60 >More info 0.13 >More info seedling Col-0 Original data GEO bulk
181 Laer pretreat GA Flg22 1h -0.27 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
182 2xX4x interploidy cross -0.51 >More info 0.18 >More info 2xX2x cross Original data GEO bulk
183 Heat shock optimum -0.48 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
184 Leafminer damaged seedlings -0.41 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk