4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on WT Red light 1h
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List of experiments correlated with "WT Red light 1h"  Help Download transcriptome of top 30
Score Experiment Correlation from
WT Red light 1h		 Correlation to
WT Red light 1h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 WT Red light 1h 1.00 >More info 1.00 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
2 2d dark-grown WT(Col-0)/1 hr red light 0.89 >More info 0.88 >More info 2d dark-grown WT seedling Original data GEO bulk
3 Dark 44min pls RedLigh 1min 0.89 >More info 0.88 >More info Dark 45 min Original data Light treatments
4 Dark 40 min pls UV-A 5 min 0.88 >More info 0.87 >More info Dark 45 min Original data Light treatments
5 Dark 40min pls UV-AB 5min 0.88 >More info 0.85 >More info Dark 45 min Original data Light treatments
6 Light 0.5h steady-state 0.87 >More info 0.81 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
7 Light 0.5h polysome-bound 0.87 >More info 0.78 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
8 Light 4h steady-state 0.82 >More info 0.79 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
9 Light 4h polysome-bound 0.82 >More info 0.79 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
10 Red/FR Light 4 h -0.73 >More info -0.79 >More info FarRed Light 4 h Original data Light treatments
11 WT Red light 18h 0.79 >More info 0.70 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
12 FarRed Light 4 h 0.69 >More info 0.73 >More info White Light 4 h Original data Light treatments
13 Red Light 4 h -0.69 >More info -0.66 >More info White Light 4 h Original data Light treatments
14 phyB Dark 0.68 >More info 0.66 >More info WT(Ler) Dark Original data GEO bulk
15 etiolated cop1BBX22-GFPox 0.72 >More info 0.62 >More info etiolated Col-0 whole seedlings Original data GEO bulk
16 Blue Light 4 h 0.59 >More info 0.74 >More info White Light 4 h Original data Light treatments
17 Dark 4 h pls UV-AB 5min 0.66 >More info 0.67 >More info Dark 4 h Original data Light treatments
18 phyAphyB Dark -0.68 >More info -0.64 >More info phyB Dark Original data GEO bulk
19 WT(Ler) Rc50 0.67 >More info 0.64 >More info WT(Ler) Dark Original data GEO bulk
20 Night Time Treatment 0.67 >More info 0.61 >More info Night Time Control 1hr white light pulse aerial rosette Original data
21 Dark 4 h pls RedLight 1min 0.57 >More info 0.70 >More info Dark 4 h Original data Light treatments
22 WT Rc50 0.66 >More info 0.61 >More info WT Dark red light whole seedling Original data GEO bulk
23 Day Time Treatment 0.66 >More info 0.60 >More info Day Time Control 1hr white light pulse aerial rosette Original data
24 WT(Ler) Rc15 0.62 >More info 0.60 >More info WT(Ler) Dark Original data GEO bulk
25 35SpBVR3 -0.65 >More info -0.56 >More info WT Original data GEO bulk
26 shl-2 Pool -0.59 >More info -0.61 >More info Ler Pool seedling Original data GEO bulk
27 60m light 0.57 >More info 0.63 >More info before light whole seedlings Original data GEO bulk
28 30m light 0.61 >More info 0.58 >More info before light whole seedlings Original data GEO bulk
29 FarRed Light 45min -0.48 >More info -0.71 >More info White Light 45min Original data Light treatments
30 WT 90-105 min Xanthomonas 0.57 >More info 0.60 >More info WT T0 Original data GEO bulk
31 lht1 untreated 0.59 >More info 0.57 >More info WT untreated untreated leaf Original data GEO bulk
32 WT hypoxia -0.58 >More info -0.55 >More info WT normoxia whole rosette Original data
33 csn5 (csn5a-2 csn5b) dark 0.67 >More info 0.44 >More info WT dark Original data GEO bulk
34 WT-Dry 0.55 >More info 0.56 >More info WT-CK dehydration treatment 1h Original data
35 seedling 24h after Gamma atm-1 0.59 >More info 0.52 >More info seedling day 2 unirradiated atm-1 24h Original data
36 csn4-1 mutant 0.67 >More info 0.43 >More info WT dark Original data GEO bulk
37 Dark 4 h pls UV-A 5 min 0.50 >More info 0.60 >More info Dark 4 h Original data Light treatments
38 msg2 -0.63 >More info -0.47 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
39 csn3-1 dark 0.68 >More info 0.42 >More info WT dark Original data GEO bulk
40 pXVE:HA-EDM2-a untreated -0.42 >More info -0.68 >More info Col-0 untreated seedlings Original data GEO bulk
41 24h volatiles Sm. R3089 -0.49 >More info -0.61 >More info 24h untreated whole seedling Original data GEO bulk
42 Col-0 WT HL 3h 0.60 >More info 0.49 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
43 Shoot dark control 7h -0.63 >More info -0.44 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
44 mkk2 control rep -0.56 >More info -0.50 >More info Col-0 Time 0 rep Original data GEO bulk
45 low R/FR JA spray -0.54 >More info -0.51 >More info high R/FR JA spray low R/FR JA spray Original data GEO bulk
46 piffq FR 3h 0.59 >More info 0.45 >More info WT FR 3h whole seedling Original data GEO bulk
47 MIL4 ox -0.56 >More info -0.48 >More info Col Original data GEO bulk
48 WT 2-4h Xanthomonas 0.37 >More info 0.67 >More info WT T0 Original data GEO bulk
49 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.56 >More info 0.47 >More info 2d dark-grown WT seedling Original data GEO bulk
50 Col-0 shade -0.56 >More info -0.47 >More info Col-0 light seedlings Original data GEO bulk
51 inhibitor A Treated 0.47 >More info 0.56 >More info Negative Control Original data GEO bulk
52 aerial organ callus inducing medium 12 h -0.68 >More info -0.34 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
53 seedling 24h after Gamma WT 0.57 >More info 0.45 >More info seedling day 2 unirradiated WT 24h Original data
54 Col-0 DEX Shade -0.64 >More info -0.37 >More info Col-0 DEX WL seedlings Original data
55 Red Light 45min -0.53 >More info -0.47 >More info White Light 45min Original data Light treatments
56 CeO2 germinant -0.26 >More info -0.73 >More info Millipore Water germinant CeO2 seedling Original data
57 pip3 At2g19270 RNAi 24 0.52 >More info 0.45 >More info Nd-1 whole plant Original data GEO bulk
58 erf104-ko H2O 4h 0.57 >More info 0.40 >More info Col-0 H2O 4h Original data GEO bulk
59 Col-0 Flg22 4h 0.29 >More info 0.68 >More info Col-0 H2O 4h Original data GEO bulk
60 WT Seedling BL 0.57 >More info 0.39 >More info WT Seedling Dark Original data GEO bulk
61 low R/FR mock spray -0.44 >More info -0.52 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
62 Shoot dark control 24h -0.56 >More info -0.39 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
63 Atss3 Light1 0.52 >More info 0.43 >More info Atss3 Dark0.5 Original data GEO bulk
64 TaFLS overexpression line (OE2) -0.55 >More info -0.39 >More info Col-0 Rosette leaves Original data
65 IRP1-OE-Ctrl--shoot 0.39 >More info 0.55 >More info COL-0-Ctrl--shoot shoot Original data
66 pip3 At2g19270 RNAi 32 0.53 >More info 0.40 >More info Nd-1 whole plant Original data GEO bulk
67 Col-0 Mock Shade -0.59 >More info -0.34 >More info Col-0 Mock WL seedlings Original data
68 petiole in FRD -0.60 >More info -0.33 >More info petiole in WL petioles Original data GEO bulk
69 des1 water 0.52 >More info 0.41 >More info WT water water leaf Original data GEO bulk
70 NJ15 0.22 >More info 0.71 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
71 essp4/sdg8-5 mutant 0.53 >More info 0.39 >More info wild type leaf Original data GEO bulk
72 Infected pft1 leaf 0.35 >More info 0.56 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
73 Whole root - S 3H 0.39 >More info 0.52 >More info Whole root - S 0H Original data GEO bulk
74 WT Na2S 0.52 >More info 0.38 >More info WT water Na2S leaf Original data GEO bulk
75 35S::ERF104 H2O 4h 0.53 >More info 0.37 >More info Col-0 H2O 4h Original data GEO bulk
76 mutant acs6E (single mutant) 0.50 >More info 0.40 >More info col control (single mutant) Original data GEO bulk
77 bio4-1 mutant watered00µM biotin leaves -0.37 >More info -0.53 >More info bio4-1 mutant leaves leaves Original data GEO bulk
78 Heat and anoxia 0.52 >More info 0.37 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
79 Heat 0.54 >More info 0.35 >More info Control 90 minutes at 38°C. Original data GEO bulk
80 ein2-1 24hpi A. brassicicola 0.50 >More info 0.39 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
81 B.cinerea 18 h infection 0.09 >More info 0.80 >More info Mock 18 h Original data Botrytis cinerea infection
82 seed germinating in countinuous light 24h SL 0.22 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
83 Botrytis cinerea 18h 0.09 >More info 0.80 >More info control 18h Original data GEO bulk
84 seedling 1.5h after Gamma atm-1 0.39 >More info 0.50 >More info seedling day 1 unirradiated atm-1 1.5h Original data
85 essp3/brm5 mutant 0.59 >More info 0.30 >More info WT (Pro-beta-CG;GUS) Original data GEO bulk
86 mutant acs9B (single mutant) -0.56 >More info -0.32 >More info col control (single mutant) Original data GEO bulk
87 MYB12OX/tt4 -0.52 >More info -0.36 >More info Col-0 aerial part Original data
88 Shoot submergence 24h -0.57 >More info -0.31 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
89 mkk1 control rep -0.55 >More info -0.32 >More info Col-0 Time 0 rep Original data GEO bulk
90 sid2-2 24hpi A. brassicicola 0.51 >More info 0.36 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
91 plant (tga2-5-6) 4h phytoprostane A1 0.37 >More info 0.50 >More info plant (tga2-5-6) 4h control Original data GEO bulk
92 oas-a1.1 root 0.26 >More info 0.61 >More info WT-Untreated Root Original data GEO bulk
93 toc1-1-85hr 0.36 >More info 0.51 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
94 csn3-1 light 0.52 >More info 0.34 >More info WT light Original data GEO bulk
95 wnk8-1 untreated -0.32 >More info -0.54 >More info Col-0 untreated seedlings Original data GEO bulk
96 bri1-116 0.11 >More info 0.73 >More info Col seedling Original data GEO bulk
97 sid2-2 mock 0.53 >More info 0.30 >More info Col0 mock DMSO control rosette leaves Original data GEO bulk
98 seedling 1.5h after HZE atm-1 -0.50 >More info -0.33 >More info seedling day 1 unirradiated atm-1 1.5h Original data
99 Anoxia 0.53 >More info 0.29 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
100 rdr6-15 -0.52 >More info -0.30 >More info Col-0 Original data GEO bulk
101 npr1 -0.31 >More info -0.51 >More info WT(COL) Original data GEO bulk
102 ckh1 CK200 0.26 >More info 0.55 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
103 amiRAP hypoxic -0.13 >More info -0.68 >More info hypoxic hypoxia Original data GEO bulk
104 Shoot -Cs 0.16 >More info 0.65 >More info Control-shoot Original data GEO bulk
105 Col-0 V. longisporum-inoculated 48 hpi 0.15 >More info 0.66 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
106 Shoot apex inflorescence (after bolting) 0.15 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
107 Dark 6h hml -0.51 >More info -0.27 >More info 0h hml Original data
108 sdg8-2 mutant 0.53 >More info 0.25 >More info wild type leaf Original data GEO bulk
109 rGRF3x35S:GIF -0.54 >More info -0.23 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
110 aerial organ callus inducing medium 48 h -0.50 >More info -0.27 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
111 mutant acs2B (single mutant) 0.50 >More info 0.27 >More info col control (single mutant) Original data GEO bulk
112 Dark 6h wt -0.50 >More info -0.27 >More info 0h wt Original data
113 PNO8 3 h 0.22 >More info 0.54 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
114 mutant acs2C (single mutant) -0.50 >More info -0.25 >More info col control (single mutant) Original data GEO bulk
115 arf2 brz -0.25 >More info -0.50 >More info arf2 mock Original data GEO bulk
116 pepr1-1 Pepr2-3 +Pep2 10h -0.23 >More info -0.52 >More info WT +Pep2 10h Pep2 Original data GEO bulk
117 cell culture 4 h phytoprostane A1 0.21 >More info 0.53 >More info cell culture 4 h control Original data GEO bulk
118 L2.5 mutant 0.24 >More info 0.50 >More info Wt Original data GEO bulk
119 aerial organ callus inducing medium 24h -0.50 >More info -0.23 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
120 35S:GIF -0.61 >More info -0.11 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
121 Fenclorim 4hr 0.16 >More info 0.55 >More info Acetone 4hr root Original data GEO bulk
122 Ler KAR1 24h seed 0.15 >More info 0.54 >More info Ler WATER 24h seed KAR1 seed Original data GEO bulk
123 control leaf (cmt 5d) 0.15 >More info 0.53 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
124 del1-1 mutant 5d uninfected 0.14 >More info 0.54 >More info Col-0 5d uininfected mature fully expanded leaves Original data GEO bulk
125 IRP1-OE-Fe--shoot 0.14 >More info 0.53 >More info COL-0-Fe--shoot shoot Original data
126 CCA14 dark late -0.54 >More info -0.12 >More info Col dark late Original data GEO bulk
127 bak1-3 +Pep2 10h 0.13 >More info 0.53 >More info WT +Pep2 10h Pep2 Original data GEO bulk
128 arr-dmso-sample -0.51 >More info -0.14 >More info Wt-dmso-sample seedling Original data
129 IMI 4mM 0.13 >More info 0.52 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
130 rGRF -0.53 >More info -0.11 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
131 CLO 4mM 0.01 >More info 0.63 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
132 CMP 4hr 0.13 >More info 0.51 >More info Acetone 4hr root Original data GEO bulk
133 etiolated cop1 0.59 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
134 P.p 2.5hai 0.03 >More info 0.60 >More info At-Control roots Original data GEO bulk
135 Shoot submergence 7h -0.62 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
136 WT zebularine 5d 0.54 >More info 0.07 >More info WT mock 5d shoot apical meristem Original data
137 mbd6 mutant thaliana 10-day-old seedling -0.53 >More info -0.06 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
138 ga1-3 SCL3OE 0.50 >More info 0.09 >More info ga1-3 whole root Original data
139 AgNO3 3 h -0.12 >More info 0.71 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
140 WT-NOCO2 INFECTED 0.05 >More info 0.53 >More info WT-MOCK Original data GEO bulk
141 dense canopy 0.05 >More info 0.53 >More info single (control) petiole Original data GEO bulk
142 Col-0 INA 48h 0.04 >More info 0.53 >More info Col-0 MOCK 48h Original data GEO bulk
143 hrpA fliC 7h -0.01 >More info 0.58 >More info Mock 7h hrpA fliC Original data GEO bulk
144 Mutant arf2 (etiol) 0.00 >More info 0.56 >More info Col (etiol) Original data GEO bulk
145 arf2 mock 0.00 >More info 0.56 >More info Col mock Original data GEO bulk
146 IAA7mII over-expressor IAA Treated -0.13 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
147 Col0-PsmES4326-24hpi -0.06 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
148 seedling 3h after HZE WT -0.56 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
149 Mh0 UV 0.13 >More info -0.66 >More info Mh0 mock UV seedling Original data
150 Lipopolysaccaride4 h (leaf) -0.05 >More info 0.57 >More info Mock 4 h (leaf) Original data Elicitor treatments
151 GST 4 h (leaf) -0.01 >More info 0.52 >More info Mock 4 h (leaf) Original data Elicitor treatments
152 seedling SPL13 -0.54 >More info 0.04 >More info seedling Col-0 Original data GEO bulk
153 pif3 Dark 1h 0.00 >More info 0.50 >More info WT Dark 1h etiolated seedling Original data GEO bulk
154 Cor hrpS 10h -0.07 >More info 0.56 >More info Mock 10h Cor hrpS Original data GEO bulk
155 Col BTH -0.19 >More info 0.67 >More info Col rosettes Original data GEO bulk
156 ein2-1 9 hpi A. brassicicola -0.06 >More info 0.54 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
157 camta1/3 warm -0.02 >More info 0.50 >More info WT warm entire aerial part Original data GEO bulk
158 Col ozone 3h -0.19 >More info 0.66 >More info Col clean-air 3h ozone Original data GEO bulk
159 S15-118 -0.07 >More info 0.54 >More info wt Original data GEO bulk
160 sid2-2 9 hpi A. brassicicola -0.07 >More info 0.54 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
161 CCA1-ox 6am non-polysomal -0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
162 light 0.63 >More info -0.18 >More info dark light seedling Original data GEO bulk
163 Red/FR Light45min -0.13 >More info 0.58 >More info FarRed Light 45min Original data Light treatments
164 P.p 30hai -0.14 >More info 0.59 >More info At-Control roots Original data GEO bulk
165 Laer pretreat GA Flg22 1h -0.27 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
166 Phaseolicola 2 h (leaf) -0.13 >More info 0.56 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
167 siliques AtHb1 control -0.09 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
168 HARAP aerobic 0.10 >More info -0.53 >More info WT aerobic aerobic Original data GEO bulk
169 pepr1-1 Pepr2-3 +Pep2 2h 0.11 >More info -0.54 >More info WT +Pep2 2h Pep2 Original data GEO bulk
170 SA 4mM -0.09 >More info 0.50 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
171 0.125 mM gold 24 h -0.12 >More info 0.53 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
172 root Dosed gold -0.12 >More info 0.53 >More info root No gold .125 mM gold 24 h roots Original data
173 C58 3hpi -0.51 >More info 0.11 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
174 DC3000 2 h (leaf) -0.10 >More info 0.50 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
175 Col-0 9 hpi A. brassicicola -0.12 >More info 0.52 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
176 bZIP1ko mutant N+Light- -0.11 >More info 0.50 >More info WT-sib N+Light- whole plant Original data GEO bulk
177 miR393 0h 0.21 >More info -0.58 >More info WT 0h Leaf tissue Original data GEO bulk
178 ORS1 induced -0.18 >More info 0.54 >More info mock-induced rosette leaves Original data GEO bulk
179 Leafminer damaged seedlings -0.24 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
180 GST NPP1 4 h (leaf) -0.19 >More info 0.51 >More info Mock 4 h (leaf) Original data Elicitor treatments
181 tunicamycin 0.18 >More info -0.50 >More info DMF Original data GEO bulk
182 P.p 6hai -0.24 >More info 0.54 >More info At-Control roots Original data GEO bulk
183 Laer Flg22 2h -0.23 >More info 0.52 >More info Laer Control leaf discs Original data GEO bulk
184 Heat shock optimum -0.37 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
185 seedlings-week-old RECA1-overexpressing
transgenic		 -0.37 >More info 0.55 >More info seedlings-week-old Col-0 seedlings Original data