4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 2d dark-grown pif1pif3pif4pif5 (pifq) mutant
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List of experiments correlated with "2d dark-grown pif1pif3pif4pif5 (pifq) mutant"  Help Download transcriptome of top 30
Score Experiment Correlation from
2d dark-grown pif1pif3pif4pif5 (pifq) mutant		 Correlation to
2d dark-grown pif1pif3pif4pif5 (pifq) mutant		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 1.00 >More info 1.00 >More info 2d dark-grown WT seedling Original data GEO bulk
2 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.90 >More info 0.91 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
3 WT Red light 18h 0.83 >More info 0.81 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
4 phyB Dark 0.71 >More info 0.76 >More info WT(Ler) Dark Original data GEO bulk
5 ABA control -0.67 >More info -0.78 >More info No ABA control Original data GEO bulk
6 phyAphyB Dark -0.68 >More info -0.75 >More info phyB Dark Original data GEO bulk
7 Dark 4 h pls RedLight 1min 0.58 >More info 0.79 >More info Dark 4 h Original data Light treatments
8 clf-28 swn-7 -0.67 >More info -0.69 >More info Col whole plant Original data GEO bulk
9 pif3 Dark 0h 0.59 >More info 0.77 >More info WT Dark 0h etiolated seedling Original data GEO bulk
10 gul2-1 bri1-5 mutant -0.71 >More info -0.63 >More info WT 7 day-old whole seedlings Original data
11 Light 4h steady-state 0.66 >More info 0.67 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
12 Light 4h polysome-bound 0.66 >More info 0.67 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
13 WT light 0.71 >More info 0.60 >More info WT dark Original data GEO bulk
14 WT(Ler) Rc50 0.54 >More info 0.77 >More info WT(Ler) Dark Original data GEO bulk
15 pif3 Dark 1h 0.63 >More info 0.67 >More info WT Dark 1h etiolated seedling Original data GEO bulk
16 gul2-1 mutant -0.70 >More info -0.60 >More info WT 7 day-old whole seedlings Original data
17 Ws seedlings -0.59 >More info -0.71 >More info ged1 seedlings Original data GEO bulk
18 ged1 seedlings 0.59 >More info 0.71 >More info Ws seedlings Original data GEO bulk
19 WT Rc50 0.54 >More info 0.75 >More info WT Dark red light whole seedling Original data GEO bulk
20 ahg1-1 -0.49 >More info -0.78 >More info ABA control Original data GEO bulk
21 aerial organ callus inducing medium 96 h -0.59 >More info -0.66 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
22 mdh -0.55 >More info -0.69 >More info Col Original data GEO bulk
23 WT Seedling BL 0.62 >More info 0.61 >More info WT Seedling Dark Original data GEO bulk
24 WT(Ler) Rc15 0.48 >More info 0.75 >More info WT(Ler) Dark Original data GEO bulk
25 hsfa1 quadruple mutant -0.57 >More info -0.64 >More info WT (Col-0) whole seedling Original data GEO bulk
26 phr1 phl1 Root-Pi -0.60 >More info -0.61 >More info WT Shoot+Pi roots Original data GEO bulk
27 fri-flc -0.56 >More info -0.64 >More info WT Original data GEO bulk
28 Dark 4 h pls UV-A 5 min 0.56 >More info 0.64 >More info Dark 4 h Original data Light treatments
29 phyABCDE Dark -0.51 >More info -0.69 >More info WT Dark Dark whole seedling Original data GEO bulk
30 35SpBVR3 -0.61 >More info -0.57 >More info WT Original data GEO bulk
31 bri1-116 0.45 >More info 0.73 >More info Col seedling Original data GEO bulk
32 estradiol induced LEC1 -0.51 >More info -0.66 >More info control Original data GEO bulk
33 Estradiol4 days -0.51 >More info -0.66 >More info Col Original data GEO bulk
34 hsfa1 quadruple mutant heat shock -0.53 >More info -0.64 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
35 aerial organ callus inducing medium 48 h -0.56 >More info -0.60 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
36 MPK6 ox Root Hypoxia 0.55 >More info 0.60 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
37 cop1 Seedling Dark 0.52 >More info 0.62 >More info WT Seedling Dark Original data GEO bulk
38 GA4 3 h (ga1 seed) -0.59 >More info -0.55 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
39 MPK6 ox Shoot Hypoxia 0.39 >More info 0.75 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
40 aerial organ callus inducing medium 12 h -0.52 >More info -0.61 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
41 phr1 Shoot-Pi 0.52 >More info 0.60 >More info WT Root-Pi shoots Original data GEO bulk
42 pif4pif5 mut 24h FR 0.46 >More info 0.66 >More info WT 24h FR Original data GEO bulk
43 etiolated cop1BBX22-GFPox 0.49 >More info 0.63 >More info etiolated Col-0 whole seedlings Original data GEO bulk
44 piffq 2d WL -0.47 >More info -0.65 >More info WT 2d WL whole seedling Original data GEO bulk
45 phyABDE Rc50 0.55 >More info 0.56 >More info phyABDE Dark red light whole seedling Original data GEO bulk
46 pif4pif5 mut 1h FR 0.54 >More info 0.57 >More info WT 1h FR Original data GEO bulk
47 pab polysome -0.35 >More info -0.76 >More info WT polysome seedling shoot/aerial seedling Original data
48 CabpBVR2 -0.55 >More info -0.54 >More info WT Original data GEO bulk
49 Col-0 low oxygen -0.57 >More info -0.52 >More info Col-0 Original data GEO bulk
50 eif3h -0.63 >More info -0.45 >More info WT Original data GEO bulk
51 phyABDE Dark -0.45 >More info -0.63 >More info WT Dark Dark whole seedling Original data GEO bulk
52 eto1-4 +393 0.62 >More info 0.45 >More info eto1-4 whole seedling Original data GEO bulk
53 ACN1-2 Sucrose 0.47 >More info 0.60 >More info Col-7 Sucrose Original data GEO bulk
54 col-5 hrpA 12h -0.48 >More info -0.59 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
55 aerial organ callus inducing medium 24h -0.53 >More info -0.53 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
56 Col-7 Sucrose -0.56 >More info -0.49 >More info col-7 Original data GEO bulk
57 2d dark-grown WT(Col-0)/1 hr red light 0.48 >More info 0.57 >More info 2d dark-grown WT seedling Original data GEO bulk
58 35S::Zat12+H2O2 -0.47 >More info -0.57 >More info WT+H2O2 H2O2 Original data GEO bulk
59 col-5 DC3000 12h -0.48 >More info -0.56 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
60 WT Red light 1h 0.47 >More info 0.56 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
61 DC3000 7h -0.47 >More info -0.55 >More info Mock 7h DC3000 Original data GEO bulk
62 ws 24h4c q8ws -0.49 >More info -0.53 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
63 atmyc2 cop1 Seedling Dark 0.54 >More info 0.47 >More info WT Seedling Dark Original data GEO bulk
64 Col-0 Root 100 mM ATP 30 min 0.56 >More info 0.44 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
65 eif3h polysome -0.64 >More info -0.35 >More info WT polysome Original data GEO bulk
66 HopZ1a treated -0.49 >More info -0.50 >More info col Original data GEO bulk
67 35S-MIF1 light grown -0.43 >More info -0.55 >More info Light-grown WT control Original data GEO bulk
68 E.coli 0157 H7 7h -0.34 >More info -0.64 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
69 Cor 10h -0.48 >More info -0.50 >More info Mock 10h Cor Original data GEO bulk
70 erf104-ko Flg22 4h -0.51 >More info -0.46 >More info erf104-ko H2O 4h Original data GEO bulk
71 eto1-4 +370 0.61 >More info 0.36 >More info eto1-4 whole seedling Original data GEO bulk
72 Shoot apex inflorescence (after bolting) 0.32 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
73 eif3h non-polysome -0.64 >More info -0.32 >More info WT non-polysome Original data GEO bulk
74 NAA -AA -0.50 >More info -0.46 >More info B5 -AA B5 media supplemented with 4.5 µM NAA and untreated Original data
75 Flagellin 4 h (leaf) -0.50 >More info -0.46 >More info Mock 4 h (leaf) Original data Elicitor treatments
76 toc1-1-85hr 0.27 >More info 0.69 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
77 low R/FR JA spray -0.45 >More info -0.51 >More info high R/FR JA spray low R/FR JA spray Original data GEO bulk
78 rosettes WT drought -0.51 >More info -0.44 >More info rosettes WT watered Original data GEO bulk
79 Sulfometuron EC50 -0.52 >More info -0.43 >More info Carrier Original data GEO bulk
80 AvrRpt2 Col-0 6hpi -0.50 >More info -0.44 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
81 Laer treat paclobutrazol (PAC) -0.52 >More info -0.42 >More info Laer Control leaf discs Original data GEO bulk
82 eto1-4 -0.59 >More info -0.35 >More info Col-0 whole seedling Original data GEO bulk
83 pif4pif5 mut dark 0.29 >More info 0.65 >More info WT dark Original data GEO bulk
84 Osmotic Stress 24 h (shoot) -0.52 >More info -0.41 >More info Stress mock 24 h (shoot) Original data Stress treatments
85 Seedling KUA1-IOX est -0.36 >More info -0.57 >More info Seedling KUA1-IOX mock Original data
86 Imbibed 24 h ABA 30uM (seed) -0.41 >More info -0.51 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
87 2d red light grown pif1pif3pif4pif5 (pifq) mutant 0.33 >More info 0.59 >More info 2d red light grown WT(Col-0) seedlings Original data GEO bulk
88 low R/FR mock spray -0.41 >More info -0.51 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
89 E.coli TUV86 2 fliC 7h -0.41 >More info -0.51 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
90 Laer Flg22 2h -0.51 >More info -0.40 >More info Laer Control leaf discs Original data GEO bulk
91 efr-1 +elf18 10h 0.37 >More info 0.54 >More info WT +elf18 10h elf18 Original data GEO bulk
92 35:SUB1A -0.50 >More info -0.41 >More info WT whole seedling Original data GEO bulk
93 low water potential -0.53 >More info -0.37 >More info control Col-0 -1.2 MPa whole seedlings Original data GEO bulk
94 SLWF infested -0.39 >More info -0.51 >More info SLWF uninfested rosette tissue Original data GEO bulk
95 Dark 3day ivd -0.54 >More info -0.35 >More info 0h ivd Original data
96 bZIP1ko mutant N+Light- -0.29 >More info -0.60 >More info WT-sib N+Light- whole plant Original data GEO bulk
97 Col-0 low R/FR -0.35 >More info -0.52 >More info Col-0 high R/FR low R/FR seedlings Original data GEO bulk
98 Dark 3day wt -0.52 >More info -0.34 >More info 0h wt Original data
99 Col-0 under 4 days salt -0.50 >More info -0.35 >More info Col-0 under control 4 days salt treatment rosette Original data
100 ACN1-2 0.27 >More info 0.58 >More info col-7 Original data GEO bulk
101 T101D 10mM NH4NO3 -0.24 >More info -0.61 >More info col 10mM NH4NO3 Root Original data
102 Dark 2day wt -0.52 >More info -0.32 >More info 0h wt Original data
103 tunicamycin 0.18 >More info 0.66 >More info DMF Original data GEO bulk
104 MYB46-GR DEX -0.33 >More info -0.50 >More info MYB46-GR mock Young rosette leaves (5-7th) Original data GEO bulk
105 Bur-0-3h IAA -0.50 >More info -0.32 >More info Bur-0h IAA whole plant Original data GEO bulk
106 sta1 -0.26 >More info -0.56 >More info WT Original data GEO bulk
107 2hr continuous KNO3 ECR cell -0.28 >More info -0.54 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
108 Dark 4 h pls UV-AB 5min 0.57 >More info 0.24 >More info Dark 4 h Original data Light treatments
109 Cor hrpS 10h -0.51 >More info -0.29 >More info Mock 10h Cor hrpS Original data GEO bulk
110 Glyphosate EC50 -0.25 >More info -0.55 >More info Carrier (Glyphosate) Original data GEO bulk
111 Col leaf scrape 5 dpi -0.54 >More info -0.25 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
112 csn5 (csn5a-2 csn5b) light -0.50 >More info -0.29 >More info WT light Original data GEO bulk
113 csn4-1 dark -0.51 >More info -0.28 >More info WT light Original data GEO bulk
114 sfr2 control 0.28 >More info 0.51 >More info WT control All aerial tissue Original data GEO bulk
115 Dark 44min pls RedLigh 1min 0.18 >More info 0.60 >More info Dark 45 min Original data Light treatments
116 WT 1wk -P -0.27 >More info -0.50 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
117 CLO 4mM -0.27 >More info -0.50 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
118 35S::ERF104 H2O 4h 0.54 >More info 0.21 >More info Col-0 H2O 4h Original data GEO bulk
119 EL (leaves 1-2) 14DAS 0.56 >More info 0.18 >More info Control for tissue data Original data GEO bulk
120 Dark 40 min pls UV-A 5 min 0.16 >More info 0.58 >More info Dark 45 min Original data Light treatments
121 cpr5npr1svi1 -0.23 >More info -0.51 >More info WT(COL) Original data GEO bulk
122 abh1 -ABA -0.22 >More info -0.51 >More info Col-0 -ABA Original data GEO bulk
123 Apex mir-319b 17DAS -0.19 >More info -0.53 >More info Apex Col 14DAS Original data GEO bulk
124 Full C2 T3 -0.22 >More info -0.50 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
125 del1-1 5dpi -0.16 >More info -0.55 >More info Col-0 5dpi mature fully expanded leaves Original data GEO bulk
126 IAA7mII over-expressor IAA Treated 0.02 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
127 erf104-ko H2O 4h 0.53 >More info 0.17 >More info Col-0 H2O 4h Original data GEO bulk
128 WT cotyledons 0.59 >More info 0.11 >More info Control for tissue data cotyledons Original data
129 pab nonpolysome -0.19 >More info -0.51 >More info WT nonpolysome seedling shoot/aerial seedling Original data
130 GRX-overexpression seedlings control -0.16 >More info -0.53 >More info WT seedlings control Seedlings Original data GEO bulk
131 rosette leaves fdh -0.18 >More info -0.51 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
132 WT (Ler) CK25 0.11 >More info 0.57 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
133 ML (Mature leaves) 35DAS 0.55 >More info 0.12 >More info Control for tissue data Original data GEO bulk
134 Ambient CO2 expanding leaf 0.55 >More info 0.12 >More info Control for tissue data expanding leaf Original data
135 shoot control p35S -0.14 >More info -0.53 >More info shoot control total Original data GEO bulk
136 pif5 high R/FR 0.15 >More info 0.52 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
137 sfr3 cold -0.52 >More info -0.11 >More info WT-cold aerial tissues Original data GEO bulk
138 seed germinating in countinuous light 24h SL -0.04 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
139 Rosette leaf No12 0.54 >More info 0.08 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
140 Expanding leaf 0.54 >More info 0.08 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
141 SCR-GR Time 1H Dex -0.09 >More info -0.53 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
142 seedling 30 min S Exp -0.04 >More info -0.58 >More info seedling -S Exp seedling Original data
143 Ambient CO2 fully expanded leaf 0.52 >More info 0.09 >More info Control for tissue data fully expanded leaf Original data
144 leaf 0.51 >More info 0.08 >More info Control for tissue data leaf Original data GEO bulk
145 seedling 0.54 >More info 0.04 >More info Control for tissue data seedling Original data GEO bulk
146 PNO8 12 h 0.05 >More info 0.53 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
147 root longitudinal zone-3 pH 4.6 0.06 >More info 0.52 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
148 Cotyledons 0.51 >More info 0.06 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
149 mpk6-ko H2O 4h 0.51 >More info 0.05 >More info Col-0 H2O 4h Original data GEO bulk
150 Apex 14DAS 0.50 >More info 0.06 >More info Control for tissue data Original data GEO bulk
151 Imbibed 1 h (seed) -0.06 >More info -0.50 >More info Dry seed Original data Time course of early seed germination
152 Dark 2day ivd -0.54 >More info -0.01 >More info 0h ivd Original data
153 2hr transitory KNO3 PrR cell -0.12 >More info 0.67 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
154 CCA1-ox 6am non-polysomal 0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
155 irradiated leaf (WT 5d) -0.01 >More info 0.53 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
156 Ambient CO2 leaf primordia 0.50 >More info -0.00 >More info Control for tissue data leaf primordia Original data
157 Col BTH -0.21 >More info 0.67 >More info Col rosettes Original data GEO bulk
158 light 0.63 >More info -0.18 >More info dark light seedling Original data GEO bulk
159 Heat shock optimum -0.24 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
160 Chemically -0.24 >More info 0.59 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
161 TNT-seedlings -0.21 >More info 0.54 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
162 Laer pretreat GA Flg22 1h -0.41 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
163 siliques AtHb1 control -0.27 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
164 Leafminer damaged seedlings -0.38 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
165 Col0-PsmES4326-24hpi -0.48 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk