4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 2d dark-grown WT(Col-0)/1 hr red light
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List of experiments correlated with "2d dark-grown WT(Col-0)/1 hr red light "  Help Download transcriptome of top 30
Score Experiment Correlation from
2d dark-grown WT(Col-0)/1 hr red light 		Correlation to
2d dark-grown WT(Col-0)/1 hr red light 		Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 2d dark-grown WT(Col-0)/1 hr red light 1.00 >More info 1.00 >More info 2d dark-grown WT seedling Original data GEO bulk
2 WT Red light 1h 0.88 >More info 0.89 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
3 Dark 40 min pls UV-A 5 min 0.84 >More info 0.85 >More info Dark 45 min Original data Light treatments
4 Dark 44min pls RedLigh 1min 0.82 >More info 0.85 >More info Dark 45 min Original data Light treatments
5 Light 0.5h polysome-bound 0.81 >More info 0.82 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
6 Light 4h steady-state 0.82 >More info 0.80 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
7 Light 4h polysome-bound 0.82 >More info 0.79 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
8 Dark 40min pls UV-AB 5min 0.83 >More info 0.77 >More info Dark 45 min Original data Light treatments
9 Light 0.5h steady-state 0.79 >More info 0.79 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
10 Red/FR Light 4 h -0.75 >More info -0.82 >More info FarRed Light 4 h Original data Light treatments
11 FarRed Light 4 h 0.73 >More info 0.80 >More info White Light 4 h Original data Light treatments
12 Blue Light 4 h 0.60 >More info 0.81 >More info White Light 4 h Original data Light treatments
13 Night Time Treatment 0.69 >More info 0.71 >More info Night Time Control 1hr white light pulse aerial rosette Original data
14 WT Red light 18h 0.77 >More info 0.61 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
15 Red Light 4 h -0.65 >More info -0.73 >More info White Light 4 h Original data Light treatments
16 phyAphyB Dark -0.69 >More info -0.62 >More info phyB Dark Original data GEO bulk
17 60m light 0.63 >More info 0.66 >More info before light whole seedlings Original data GEO bulk
18 phyB Dark 0.68 >More info 0.61 >More info WT(Ler) Dark Original data GEO bulk
19 WT(Ler) Rc50 0.66 >More info 0.59 >More info WT(Ler) Dark Original data GEO bulk
20 shl-2 Pool -0.55 >More info -0.68 >More info Ler Pool seedling Original data GEO bulk
21 Day Time Treatment 0.62 >More info 0.60 >More info Day Time Control 1hr white light pulse aerial rosette Original data
22 WT(Ler) Rc15 0.63 >More info 0.59 >More info WT(Ler) Dark Original data GEO bulk
23 FarRed Light 45min -0.50 >More info -0.72 >More info White Light 45min Original data Light treatments
24 etiolated cop1BBX22-GFPox 0.68 >More info 0.53 >More info etiolated Col-0 whole seedlings Original data GEO bulk
25 30m light 0.63 >More info 0.58 >More info before light whole seedlings Original data GEO bulk
26 WT Rc50 0.65 >More info 0.56 >More info WT Dark red light whole seedling Original data GEO bulk
27 aerial organ callus inducing medium 12 h -0.64 >More info -0.56 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
28 Dark 4 h pls UV-AB 5min 0.60 >More info 0.58 >More info Dark 4 h Original data Light treatments
29 petiole in FRD -0.61 >More info -0.55 >More info petiole in WL petioles Original data GEO bulk
30 pip3 At2g19270 RNAi 32 0.57 >More info 0.59 >More info Nd-1 whole plant Original data GEO bulk
31 pip3 At2g19270 RNAi 24 0.55 >More info 0.60 >More info Nd-1 whole plant Original data GEO bulk
32 Col-0 shade -0.54 >More info -0.59 >More info Col-0 light seedlings Original data GEO bulk
33 low R/FR JA spray -0.53 >More info -0.59 >More info high R/FR JA spray low R/FR JA spray Original data GEO bulk
34 Dark 4 h pls RedLight 1min 0.48 >More info 0.62 >More info Dark 4 h Original data Light treatments
35 Col-0 DEX Shade -0.64 >More info -0.44 >More info Col-0 DEX WL seedlings Original data
36 seedling 24h after Gamma atm-1 0.56 >More info 0.52 >More info seedling day 2 unirradiated atm-1 24h Original data
37 Col-0 WT HL 3h 0.59 >More info 0.48 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
38 Shoot dark control 7h -0.56 >More info -0.50 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
39 Atss3 Light1 0.51 >More info 0.54 >More info Atss3 Dark0.5 Original data GEO bulk
40 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.57 >More info 0.48 >More info 2d dark-grown WT seedling Original data GEO bulk
41 WT hypoxia -0.55 >More info -0.49 >More info WT normoxia whole rosette Original data
42 24h volatiles Sm. R3089 -0.52 >More info -0.52 >More info 24h untreated whole seedling Original data GEO bulk
43 mkk2 control rep -0.56 >More info -0.47 >More info Col-0 Time 0 rep Original data GEO bulk
44 csn3-1 dark 0.60 >More info 0.43 >More info WT dark Original data GEO bulk
45 low R/FR mock spray -0.43 >More info -0.60 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
46 MYB12OX/tt4 -0.51 >More info -0.50 >More info Col-0 aerial part Original data
47 oas-a1.1 root 0.34 >More info 0.67 >More info WT-Untreated Root Original data GEO bulk
48 piffq FR 3h 0.52 >More info 0.48 >More info WT FR 3h whole seedling Original data GEO bulk
49 seedling 24h after Gamma WT 0.54 >More info 0.46 >More info seedling day 2 unirradiated WT 24h Original data
50 WT Na2S 0.49 >More info 0.51 >More info WT water Na2S leaf Original data GEO bulk
51 csn5 (csn5a-2 csn5b) dark 0.59 >More info 0.40 >More info WT dark Original data GEO bulk
52 sid2-2 24hpi A. brassicicola 0.52 >More info 0.47 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
53 MIL4 ox -0.53 >More info -0.46 >More info Col Original data GEO bulk
54 GV3101 3hpi -0.44 >More info -0.54 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
55 dde2-2 24hpi A. brassicicola 0.46 >More info 0.52 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
56 des1 water 0.51 >More info 0.46 >More info WT water water leaf Original data GEO bulk
57 essp4/sdg8-5 mutant 0.53 >More info 0.43 >More info wild type leaf Original data GEO bulk
58 csn4-1 mutant 0.59 >More info 0.36 >More info WT dark Original data GEO bulk
59 Shoot submergence 24h -0.52 >More info -0.43 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
60 cop1 Seedling BL+ABA 0.50 >More info 0.45 >More info WT Seedling BL+ABA Original data GEO bulk
61 ga1-3 SCL3OE 0.52 >More info 0.43 >More info ga1-3 whole root Original data
62 Dark 4 h pls UV-A 5 min 0.42 >More info 0.53 >More info Dark 4 h Original data Light treatments
63 Col-0 Mock Shade -0.56 >More info -0.38 >More info Col-0 Mock WL seedlings Original data
64 WT Seedling BL 0.53 >More info 0.40 >More info WT Seedling Dark Original data GEO bulk
65 mutant acs9B (single mutant) -0.52 >More info -0.41 >More info col control (single mutant) Original data GEO bulk
66 aerial organ callus inducing medium 24h -0.51 >More info -0.42 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
67 lht1 untreated 0.53 >More info 0.39 >More info WT untreated untreated leaf Original data GEO bulk
68 msg2 -0.50 >More info -0.42 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
69 toc1-1-85hr 0.34 >More info 0.58 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
70 mbd6 mutant thaliana 10-day-old seedling -0.53 >More info -0.38 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
71 mkk1 control rep -0.53 >More info -0.37 >More info Col-0 Time 0 rep Original data GEO bulk
72 mutant acs6E (single mutant) 0.50 >More info 0.40 >More info col control (single mutant) Original data GEO bulk
73 Shoot dark control 24h -0.50 >More info -0.38 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
74 hepta mutant (higher order mutant) -0.50 >More info -0.38 >More info col control (higher order mutant) Original data GEO bulk
75 erf104-ko H2O 4h 0.56 >More info 0.31 >More info Col-0 H2O 4h Original data GEO bulk
76 sdg8-2 mutant 0.50 >More info 0.37 >More info wild type leaf Original data GEO bulk
77 Red Light 45min -0.51 >More info -0.35 >More info White Light 45min Original data Light treatments
78 cat2-2; 0h switch to ambient CO2 concentrations; -0.27 >More info -0.59 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
79 seed germinating in countinuous light 24h SL 0.17 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
80 Heat 0.54 >More info 0.28 >More info Control 90 minutes at 38°C. Original data GEO bulk
81 ABA 1 h 0.20 >More info 0.62 >More info Mock 1 h Original data Basic hormone treatment of seedlings
82 phyABDE 4-day dark- 2 hours Rc50 0.19 >More info 0.63 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
83 35SpBVR3 -0.57 >More info -0.25 >More info WT Original data GEO bulk
84 Heat and anoxia 0.50 >More info 0.31 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
85 sid2-2 mock 0.50 >More info 0.30 >More info Col0 mock DMSO control rosette leaves Original data GEO bulk
86 abi4-102 -lincomycin -0.55 >More info -0.25 >More info Col-0 -lincomycin Original data GEO bulk
87 bri1-116 0.07 >More info 0.73 >More info Col seedling Original data GEO bulk
88 csn3-1 light 0.51 >More info 0.28 >More info WT light Original data GEO bulk
89 phyABDE Rc50 0.24 >More info 0.55 >More info phyABDE Dark red light whole seedling Original data GEO bulk
90 mutant acs2B (single mutant) 0.52 >More info 0.26 >More info col control (single mutant) Original data GEO bulk
91 Shoot apex inflorescence (after bolting) 0.11 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
92 npr1 -0.26 >More info -0.50 >More info WT(COL) Original data GEO bulk
93 CeO2 germinant -0.26 >More info -0.50 >More info Millipore Water germinant CeO2 seedling Original data
94 35S::ERF104 H2O 4h 0.53 >More info 0.22 >More info Col-0 H2O 4h Original data GEO bulk
95 ABA SA 24h 0.18 >More info 0.53 >More info EtOH 24h 24hr Original data GEO bulk
96 Col-0 RNAi-MBS2/mbs1-1 HL 3h 0.53 >More info 0.16 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
97 NaCl Col 0.10 >More info 0.58 >More info Col Original data GEO bulk
98 whole roots -Fe 6 hour 0.16 >More info 0.50 >More info whole roots standard Original data GEO bulk
99 root longitudinal zone-4 NaCl 0.13 >More info 0.53 >More info root longitudinal zone-4 Original data GEO bulk
100 35S:RPS4 rrs1-11 T0 0.16 >More info 0.50 >More info 35S:RPS4 T0 leaves Original data
101 35S:GIF -0.59 >More info -0.05 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
102 whole roots 140 mM NaCl 4 hour 0.09 >More info 0.55 >More info whole roots standard Original data GEO bulk
103 gul2-1 bri1-5 mutant -0.51 >More info -0.12 >More info WT 7 day-old whole seedlings Original data
104 WT zebularine 5d 0.51 >More info 0.10 >More info WT mock 5d shoot apical meristem Original data
105 npr1 sni1 ssn2 0.53 >More info 0.07 >More info npr1 sni1 water water seedling Original data GEO bulk
106 IAA7mII over-expressor IAA Treated -0.09 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
107 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
108 etiolated cop1 0.51 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
109 ABA 0.5 h 0.02 >More info 0.53 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
110 Shoot submergence 7h -0.54 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
111 Col0-PsmES4326-24hpi -0.07 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
112 pGL1::GL1-GR Dex 24hours 0.14 >More info -0.65 >More info pGL1::GL1-GR mock 24hours Original data GEO bulk
113 siliques AtHb1 control -0.04 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
114 WT (Ler) CK25 -0.05 >More info 0.52 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
115 light 0.61 >More info -0.18 >More info dark light seedling Original data GEO bulk
116 Laer pretreat GA Flg22 1h -0.28 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
117 Col BTH -0.25 >More info 0.67 >More info Col rosettes Original data GEO bulk
118 Full AC2 T2 -0.51 >More info 0.10 >More info AC2 and AC2del control T2 two days post infusion with Agrobacterium containing full-length CaLCuV AC2 Arabidopsis rosette leaves Original data
119 Leafminer damaged seedlings -0.21 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
120 Heat shock optimum -0.37 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk