4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on csn3-1 dark
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List of experiments correlated with "csn3-1 dark"  Help Download transcriptome of top 30
Score Experiment Correlation from
csn3-1 dark		 Correlation to
csn3-1 dark		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 csn3-1 dark 1.00 >More info 1.00 >More info WT dark Original data GEO bulk
2 csn5 (csn5a-2 csn5b) dark 0.95 >More info 0.95 >More info WT dark Original data GEO bulk
3 csn4-1 mutant 0.93 >More info 0.92 >More info WT dark Original data GEO bulk
4 csn3-1 light 0.79 >More info 0.79 >More info WT light Original data GEO bulk
5 csn4-1 dark 0.74 >More info 0.76 >More info WT light Original data GEO bulk
6 WT light 0.70 >More info 0.79 >More info WT dark Original data GEO bulk
7 csn5 (csn5a-2 csn5b) light 0.75 >More info 0.74 >More info WT light Original data GEO bulk
8 35SpBVR3 -0.72 >More info -0.77 >More info WT Original data GEO bulk
9 cop1 Seedling BL+ABA 0.68 >More info 0.80 >More info WT Seedling BL+ABA Original data GEO bulk
10 etiolated cop1BBX22-GFPox 0.71 >More info 0.75 >More info etiolated Col-0 whole seedlings Original data GEO bulk
11 CabpBVR2 -0.72 >More info -0.74 >More info WT Original data GEO bulk
12 AtLysM RLK1 mutant water 0.70 >More info 0.73 >More info WT water Original data GEO bulk
13 Light 4h polysome-bound 0.65 >More info 0.77 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
14 cop1 Seedling BL 0.64 >More info 0.77 >More info WT Seedling BL Original data GEO bulk
15 toc1-1-85hr 0.60 >More info 0.80 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
16 Light 4h steady-state 0.60 >More info 0.79 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
17 seedling 24h after Gamma WT 0.63 >More info 0.75 >More info seedling day 2 unirradiated WT 24h Original data
18 WT Red light 18h 0.63 >More info 0.73 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
19 atmyc2 cop1 Seedling BL 0.69 >More info 0.66 >More info WT Seedling BL Original data GEO bulk
20 Red/FR Light 4 h -0.52 >More info -0.80 >More info FarRed Light 4 h Original data Light treatments
21 WT Seedling BL 0.61 >More info 0.71 >More info WT Seedling Dark Original data GEO bulk
22 seedling 24h after Gamma atm-1 0.61 >More info 0.71 >More info seedling day 2 unirradiated atm-1 24h Original data
23 phyB Dark 0.61 >More info 0.69 >More info WT(Ler) Dark Original data GEO bulk
24 Dark 4 h pls UV-AB 5min 0.60 >More info 0.70 >More info Dark 4 h Original data Light treatments
25 toc1-1-81hr 0.53 >More info 0.74 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
26 ahg2-1sid2-2 0.56 >More info 0.70 >More info WT (Col) control Original data GEO bulk
27 Shoot dark control 24h -0.58 >More info -0.66 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
28 phyAphyB Dark -0.55 >More info -0.68 >More info phyB Dark Original data GEO bulk
29 FarRed Light 4 h 0.43 >More info 0.80 >More info White Light 4 h Original data Light treatments
30 Day Time Treatment 0.55 >More info 0.67 >More info Day Time Control 1hr white light pulse aerial rosette Original data
31 seedling 1.5h after Gamma WT 0.55 >More info 0.67 >More info seedling day 1 unirradiated WT 1.5h Original data
32 WT(Ler) Rc50 0.56 >More info 0.66 >More info WT(Ler) Dark Original data GEO bulk
33 WT Rc50 0.57 >More info 0.65 >More info WT Dark red light whole seedling Original data GEO bulk
34 bri1-116 0.49 >More info 0.73 >More info Col seedling Original data GEO bulk
35 cop1 Seedling Dark 0.57 >More info 0.64 >More info WT Seedling Dark Original data GEO bulk
36 Mutant cry1 (High Light) -0.55 >More info -0.64 >More info Col-0 (High Light) Original data GEO bulk
37 cry1 high light -0.55 >More info -0.64 >More info Col-O high light Original data GEO bulk
38 Col-0 WT HL 3h 0.55 >More info 0.62 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
39 eto1-4 + AVG -0.53 >More info -0.63 >More info eto1-4 whole seedling Original data GEO bulk
40 atmyc2 cop1 Seedling Dark 0.52 >More info 0.63 >More info WT Seedling Dark Original data GEO bulk
41 Red Light 4 h -0.41 >More info -0.74 >More info White Light 4 h Original data Light treatments
42 low CO2 + dark -0.45 >More info -0.70 >More info normal CO2 + light Original data GEO bulk
43 Light 0.5h polysome-bound 0.50 >More info 0.64 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
44 Mutant axr3-1 0.51 >More info 0.63 >More info Col Original data GEO bulk
45 WT(Ler) Rc15 0.51 >More info 0.62 >More info WT(Ler) Dark Original data GEO bulk
46 L2.4 mutant 0.51 >More info 0.62 >More info Wt Original data GEO bulk
47 Shoot dark control 7h -0.51 >More info -0.61 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
48 det2 light-dark -0.54 >More info -0.58 >More info det2 light light-dark Original data GEO bulk
49 phr1 phl1 Root-Pi -0.47 >More info -0.64 >More info WT Shoot+Pi roots Original data GEO bulk
50 sdg2 0.59 >More info 0.51 >More info wt seedling Original data GEO bulk
51 Mutant sav3-2 (WL) 0.46 >More info 0.64 >More info Col-0 (WL) Original data GEO bulk
52 penta mutant (higher order mutant) -0.49 >More info -0.61 >More info col control (higher order mutant) Original data GEO bulk
53 WT Red light 1h 0.42 >More info 0.68 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
54 sav3-2 light 0.46 >More info 0.64 >More info Col-0 light seedlings Original data GEO bulk
55 SA 0.50 >More info 0.58 >More info WT mock Whole seedling Original data GEO bulk
56 30m light 0.51 >More info 0.57 >More info before light whole seedlings Original data GEO bulk
57 erf5 erf6 +chitooctaose -0.48 >More info -0.59 >More info WT+chitooctaose chitooctaose seedlings Original data GEO bulk
58 Blue Light 4 h 0.32 >More info 0.74 >More info White Light 4 h Original data Light treatments
59 phr1 Shoot-Pi 0.47 >More info 0.59 >More info WT Root-Pi shoots Original data GEO bulk
60 Shoot submergence 24h -0.48 >More info -0.58 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
61 WT hypoxia -0.48 >More info -0.58 >More info WT normoxia whole rosette Original data
62 GiantCell Root 0.52 >More info 0.53 >More info Control Root laser captured giant cells Original data GEO bulk
63 mp-B4149 mutant IAA 0.53 >More info 0.52 >More info GR-bdl IAA Original data GEO bulk
64 toc1-1-89hr 0.55 >More info 0.49 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
65 Dark 44min pls RedLigh 1min 0.36 >More info 0.67 >More info Dark 45 min Original data Light treatments
66 2d dark-grown WT(Col-0)/1 hr red light 0.43 >More info 0.60 >More info 2d dark-grown WT seedling Original data GEO bulk
67 gun1-1 +lincomycin 0.48 >More info 0.54 >More info Col-0 +lincomycin Original data GEO bulk
68 tetraploid -0.46 >More info -0.56 >More info diploid Original data GEO bulk
69 Col-0 low oxygen -0.50 >More info -0.51 >More info Col-0 Original data GEO bulk
70 aba2 1% sucrose 12-day-old -0.49 >More info -0.52 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
71 Col-0 wt Hypoxic 0.38 >More info 0.63 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
72 phyABDE Rc50 0.46 >More info 0.55 >More info phyABDE Dark red light whole seedling Original data GEO bulk
73 hy5 low light -0.51 >More info -0.49 >More info Col-O low light Original data GEO bulk
74 Mutant hy5 -0.51 >More info -0.49 >More info Col-0 Original data GEO bulk
75 MG132 3 h 0.57 >More info 0.43 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
76 petiole in FRD -0.46 >More info -0.54 >More info petiole in WL petioles Original data GEO bulk
77 LTN005-2 TSA 0.47 >More info 0.53 >More info LTN012-2 Mock Original data
78 Genotoxic Stress 3 h (shoot) 0.30 >More info 0.69 >More info Stress mock 3 h (shoot) Original data Stress treatments
79 Dark 4 h pls RedLight 1min 0.31 >More info 0.67 >More info Dark 4 h Original data Light treatments
80 Dark 4 h pls UV-A 5 min 0.38 >More info 0.60 >More info Dark 4 h Original data Light treatments
81 toc1-1-57hr 0.39 >More info 0.59 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
82 9 hr Hypoxia 1 hr recovery Total RNA 0.43 >More info 0.55 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
83 pif4pif5 mut 1h FR 0.34 >More info 0.63 >More info WT 1h FR Original data GEO bulk
84 cdpk6-yfp 0.38 >More info 0.59 >More info Kan seedlings Original data GEO bulk
85 Night Time Treatment 0.39 >More info 0.58 >More info Night Time Control 1hr white light pulse aerial rosette Original data
86 UV 0.40 >More info 0.56 >More info WT aerial region Original data GEO bulk
87 axr2 0.39 >More info 0.57 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
88 WT chitooctaose 0.55 >More info 0.40 >More info WT water Original data GEO bulk
89 Red Light 45min -0.26 >More info -0.69 >More info White Light 45min Original data Light treatments
90 Dark 40min pls UV-AB 5min 0.35 >More info 0.60 >More info Dark 45 min Original data Light treatments
91 60m light 0.41 >More info 0.54 >More info before light whole seedlings Original data GEO bulk
92 Light 0.5h steady-state 0.30 >More info 0.65 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
93 root cortex pH4.6 0.38 >More info 0.57 >More info root cortex pH5.7 Original data GEO bulk
94 1 h Light Total RNA 0.43 >More info 0.52 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
95 gun1gun5 Norflurazon 0.38 >More info 0.57 >More info Norflurazon a herbicide (Norflurazon) seedling Original data GEO bulk
96 Col leaves 120h LT 0.38 >More info 0.57 >More info Col leaves 0h LT 12h 9-11th adult leaves Original data
97 35:SUB1C -0.38 >More info -0.56 >More info WT whole seedling Original data GEO bulk
98 Wt-BA-sample -0.40 >More info -0.54 >More info Wt-dmso-sample seedling Original data
99 BR 0.35 >More info 0.59 >More info WT-mock BR dark-grown seedlings Original data GEO bulk
100 prors1-2 leaves 0.42 >More info 0.52 >More info Col-0 leaves leaves Original data
101 seedling 3h after Gamma WT 0.34 >More info 0.60 >More info seedling day 1 unirradiated WT 3h Original data
102 root endodermis and quiescent center pH4.6 0.39 >More info 0.53 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
103 OXUPB1-2 meristematic zone 0.32 >More info 0.60 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
104 Pseudomonas -0.35 >More info -0.57 >More info Control pseudomonas treated whole seedling Original data GEO bulk
105 aerial organ callus inducing medium 96 h -0.35 >More info -0.57 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
106 Col-0 DEX Shade -0.61 >More info -0.30 >More info Col-0 DEX WL seedlings Original data
107 Dark 40 min pls UV-A 5 min 0.25 >More info 0.65 >More info Dark 45 min Original data Light treatments
108 dicamba 0.38 >More info 0.52 >More info WT mock whole seedling Original data GEO bulk
109 Mutant sav3-2 (SH) 0.34 >More info 0.55 >More info Col-0 (SH) Original data GEO bulk
110 sav3-2 shade 0.34 >More info 0.55 >More info Col-0 shade seedlings Original data GEO bulk
111 Shoot apex inflorescence (after bolting) 0.24 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
112 OsRLCK253 expressing 0.39 >More info 0.50 >More info WT seedlings Original data GEO bulk
113 Cs shoot -0.37 >More info -0.51 >More info control shoot Original data GEO bulk
114 Ws-2 high light 0.31 >More info 0.57 >More info Ws-2 low light Original data GEO bulk
115 cca1-lhy 30m light -0.51 >More info -0.36 >More info 30m light whole seedlings Original data GEO bulk
116 Mutant axr3-1 (IAA) 0.33 >More info 0.53 >More info Col (IAA) Original data GEO bulk
117 E2Fa-Dpa 0.32 >More info 0.54 >More info WT Original data GEO bulk
118 triploid female excess 0.26 >More info 0.60 >More info tetraploid Original data GEO bulk
119 TAMM27 roots 2hr KNO3 nitrogen 0.30 >More info 0.55 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
120 long 12-degree- 0.25 >More info 0.60 >More info control long Original data GEO bulk
121 sta1 0.54 >More info 0.30 >More info WT Original data GEO bulk
122 AFB1 0h 0.29 >More info 0.55 >More info WT 0h Leaf tissue Original data GEO bulk
123 +GA-180mins -0.30 >More info -0.54 >More info -180mins whole plant Original data GEO bulk
124 Starch sheath 5 days MS incubation 0.33 >More info 0.51 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
125 3x(p) -0.34 >More info -0.50 >More info 2x two week old seedlings Original data
126 tfl1-1-16ºC -0.29 >More info -0.54 >More info WT-16ºC Original data GEO bulk
127 Laer Flg22(Agrobacterium) 2h 0.30 >More info 0.53 >More info Laer Control leaf discs Original data GEO bulk
128 axr2-BR 0.32 >More info 0.51 >More info BR BR dark-grown seedlings Original data GEO bulk
129 tt4 UV -0.19 >More info -0.63 >More info UV aerial region Original data GEO bulk
130 ABA JA 24h -0.29 >More info -0.53 >More info EtOH 24h 24hr Original data GEO bulk
131 oas-a1.1 root 0.30 >More info 0.51 >More info WT-Untreated Root Original data GEO bulk
132 QK HS 0.28 >More info 0.53 >More info QK control heat shocked seedling Original data GEO bulk
133 short 12-degree- 0.14 >More info 0.66 >More info control short Original data GEO bulk
134 root hypoxia pGL2 0.27 >More info 0.53 >More info root hypoxia total hypoxia root Original data GEO bulk
135 seed germinating in countinuous light 24h SL 0.13 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
136 seedling 1.5h after HZE atm-1 -0.29 >More info -0.51 >More info seedling day 1 unirradiated atm-1 1.5h Original data
137 GA3 3 h (ga1) -0.28 >More info -0.51 >More info Mock 3 h (ga1) Original data Basic hormone treatment of seedlings
138 long 10-degree- 0.25 >More info 0.54 >More info control long Original data GEO bulk
139 agb1 -ABA LF -0.14 >More info -0.65 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
140 root stele -S 0.24 >More info 0.55 >More info root stele pH5.7 Original data GEO bulk
141 pepr1-1 Pepr2-3 untreated 0.23 >More info 0.56 >More info WT untreated untreated Original data GEO bulk
142 bbx24 in Simulated Shade -0.26 >More info -0.53 >More info WT in simulated shade shade seedling Original data
143 WT Root Hypoxia 0.20 >More info 0.58 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
144 toc1-1-73hr 0.20 >More info 0.57 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
145 Propiconazole 3 h 0.51 >More info 0.25 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
146 pif4pif5 mut dark 0.08 >More info 0.68 >More info WT dark Original data GEO bulk
147 apum23 0.26 >More info 0.50 >More info WT (Col-3) aerial parts Original data GEO bulk
148 ani1 T0.5 0.19 >More info 0.57 >More info WT T0.5 root tissue Original data GEO bulk
149 etiolated cop1 0.71 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
150 root - 04% oxygen - 48h 0.23 >More info 0.52 >More info root - 21% oxygen - 48h Original data GEO bulk
151 DUO1 induced 6h 0.19 >More info 0.56 >More info 6hr-not-induced whole plant Original data GEO bulk
152 WT-16ºC -0.20 >More info -0.54 >More info WT-23ºC Original data GEO bulk
153 PNO8 12 h -0.13 >More info -0.60 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
154 shoot hypoxia p35S -0.16 >More info -0.57 >More info shoot hypoxia total Original data GEO bulk
155 long 17-degree- 0.18 >More info 0.54 >More info control long Original data GEO bulk
156 atm3 -0.04 >More info -0.67 >More info Col0 whole plant Original data GEO bulk
157 ms35 silique stage 5 0.18 >More info 0.52 >More info Ler .5 anther and filament Original data GEO bulk
158 shoot control p35S -0.16 >More info -0.53 >More info shoot control total Original data GEO bulk
159 IAA7mII over-expressor IAA Treated -0.00 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
160 low CO2 + light -0.12 >More info -0.57 >More info normal CO2 + light Original data GEO bulk
161 root epidermis and lateral root cap -S 0.14 >More info 0.54 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
162 irradiated leaf (WT 1d) 0.09 >More info 0.58 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
163 FarRed Light 45min -0.10 >More info -0.56 >More info White Light 45min Original data Light treatments
164 short 17-degree- 0.13 >More info 0.52 >More info control short Original data GEO bulk
165 Col BTH -0.02 >More info 0.67 >More info Col rosettes Original data GEO bulk
166 SCR-GR Time 1H Dex -0.09 >More info -0.55 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
167 Polysomal RNA 35S:AtCSP1-FH1 -0.07 >More info -0.55 >More info Polysomal RNA csp1 12h non-stress rosettes Original data GEO bulk
168 35S::PI ap3-3 35S::AP-GR +DEX 0.05 >More info 0.57 >More info 0hr DEX Original data GEO bulk
169 seedling 24h after HZE WT 0.09 >More info 0.53 >More info seedling day 2 unirradiated WT 24h Original data
170 WT (Col) glucose 0.07 >More info 0.54 >More info WT (Col) glucose seedlings Original data GEO bulk
171 PNO8 3 h 0.53 >More info 0.07 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
172 siliques AtHb1 control 0.08 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
173 irradiated leaf (cmt 1d) 0.09 >More info 0.51 >More info control leaf (cmt 1d) rosette leaf only Original data GEO bulk
174 root - 04% oxygen - 2h -0.01 >More info 0.59 >More info root - 21% oxygen - 2h Original data GEO bulk
175 21h-DC3000 avrRpm1 -0.02 >More info 0.60 >More info 21h-DC3000 leaves Original data GEO bulk
176 gpa1 -ABA GC 0.07 >More info 0.50 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
177 Imbibed 1 h (seed) 0.02 >More info -0.58 >More info Dry seed Original data Time course of early seed germination
178 ms35 silique stage 7 0.03 >More info 0.52 >More info Ler 6.7 anther and filament Original data GEO bulk
179 Seedling KUA1-IOX est 0.08 >More info -0.63 >More info Seedling KUA1-IOX mock Original data
180 cpctry -0.02 >More info 0.56 >More info Col Original data GEO bulk
181 Col0-PsmES4326-24hpi -0.10 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
182 CCA1-ox 6am non-polysomal -0.00 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
183 Laer pretreat GA Flg22 1h -0.23 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
184 light 0.65 >More info -0.18 >More info dark light seedling Original data GEO bulk
185 35S::HRE2 Aerobic 0.06 >More info -0.51 >More info Col-0 wt Aerobic untreated control Original data GEO bulk
186 Heat shock optimum -0.25 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
187 Leafminer damaged seedlings -0.18 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
188 Ibuprofen 3 h 0.50 >More info -0.12 >More info Mock 3 h Original data Effect of other inhibitors on seedlings