4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 9 hr Hypoxia 1 hr recovery Total RNA
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List of experiments correlated with "9 hr Hypoxia 1 hr recovery Total RNA"  Help Download transcriptome of top 30
Score Experiment Correlation from
9 hr Hypoxia 1 hr recovery Total RNA		 Correlation to
9 hr Hypoxia 1 hr recovery Total RNA		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 9 hr Hypoxia 1 hr recovery Total RNA 1.00 >More info 1.00 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
2 9 hr Hypoxia Total RNA 0.89 >More info 0.89 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
3 9 hr Hypoxia 1 hr recovery IP RNA 0.86 >More info 0.91 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
4 9 hr Hypoxia IP RNA 0.81 >More info 0.85 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
5 2 hr Hypoxia Total RNA 0.77 >More info 0.79 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
6 Col-0 low oxygen 0.77 >More info 0.78 >More info Col-0 control low oxygen root Original data GEO bulk
7 Heat and anoxia 0.72 >More info 0.81 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
8 Col-0 wt Hypoxic 0.74 >More info 0.79 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
9 Col-0 2HS 0.75 >More info 0.77 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
10 plant (tga2-5-6) 4h phytoprostane A1 0.68 >More info 0.82 >More info plant (tga2-5-6) 4h control Original data GEO bulk
11 Anoxia 0.74 >More info 0.75 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
12 root hypoxia total 0.70 >More info 0.77 >More info root control total Original data GEO bulk
13 AgNO3 3 h 0.68 >More info 0.78 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
14 5-Triiodobenzoic acid3 h 0.68 >More info 0.78 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
15 WT 30μM arsenate 8 hours. 0.70 >More info 0.76 >More info WT control (not supplemented). Original data
16 MPK6 ox Shoot Hypoxia 0.60 >More info 0.86 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
17 Ws HS 0.65 >More info 0.79 >More info Ws control heat shocked seedling Original data GEO bulk
18 SA 0.71 >More info 0.71 >More info WT mock Whole seedling Original data GEO bulk
19 Col-0 37C 0.66 >More info 0.75 >More info Col-0 22C Original data GEO bulk
20 TNT-seedlings 0.61 >More info 0.80 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
21 WT+H2O2 0.68 >More info 0.72 >More info WT H2O2 Original data GEO bulk
22 Heat 0.65 >More info 0.74 >More info Control 90 minutes at 38°C. Original data GEO bulk
23 inhibitor B Treated 0.61 >More info 0.78 >More info Negative Control Original data GEO bulk
24 WT Shoot Hypoxia 0.61 >More info 0.78 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
25 Cocultivation 8 hrs root 0.68 >More info 0.71 >More info Mock cocultivation 8 hrs root Root Original data
26 dicamba 0.73 >More info 0.66 >More info WT mock whole seedling Original data GEO bulk
27 Phytoprostane A1 4 h 0.63 >More info 0.75 >More info Col-0 Original data GEO bulk
28 hira-root -0.68 >More info -0.70 >More info WT-root root Original data
29 CMP 4hr 0.72 >More info 0.66 >More info Acetone 4hr root Original data GEO bulk
30 R. solani AG8 0.68 >More info 0.70 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
31 WT seedlings MV 0.64 >More info 0.73 >More info WT seedlings control Seedlings Original data GEO bulk
32 shoot hypoxia total 0.60 >More info 0.77 >More info shoot control total Original data GEO bulk
33 roottip hypoxia total 0.64 >More info 0.73 >More info roottip control total Original data GEO bulk
34 Selenate (root) 0.63 >More info 0.73 >More info Ws (root) Original data GEO bulk
35 Root Selenate 0.63 >More info 0.73 >More info Root control 40 micromolar selenate Root Original data GEO bulk
36 Seedling-HeatStressed TOTALmRNA 0.60 >More info 0.76 >More info Seedling-control TOTALmRNA seedling Original data
37 Cycloheximide 3 h 0.66 >More info 0.68 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
38 Col-0 HS 0.51 >More info 0.83 >More info Col-0 control heat shocked seedling Original data GEO bulk
39 WT (Col-0) heat shock 0.51 >More info 0.83 >More info WT (Col-0) whole seedling Original data GEO bulk
40 dark-hs 0.60 >More info 0.73 >More info dark-control seedling Original data
41 Col upon hypoxia 6 hrs 0.68 >More info 0.65 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
42 NJ15 0.53 >More info 0.78 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
43 WT-16ºC -0.64 >More info -0.67 >More info WT-23ºC Original data GEO bulk
44 Seedling-HeatStressed POLYSOMESmRNA 0.55 >More info 0.76 >More info Seedling-control POLYSOMESmRNA seedling Original data
45 atmyc2 cop1 Seedling BL 0.65 >More info 0.66 >More info WT Seedling BL Original data GEO bulk
46 oligomycin 4 h 0.64 >More info 0.66 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
47 cop1 Seedling BL 0.65 >More info 0.65 >More info WT Seedling BL Original data GEO bulk
48 flu 0.58 >More info 0.71 >More info WT Col Original data GEO bulk
49 inhibitor A Treated 0.53 >More info 0.76 >More info Negative Control Original data GEO bulk
50 toc1-1-53hr 0.53 >More info 0.76 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
51 2 hr Hypoxia IP RNA 0.64 >More info 0.64 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
52 anac017-2 AntimycinA 3h -0.65 >More info -0.63 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
53 WT Root Hypoxia 0.53 >More info 0.75 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
54 WT AntimycinA 3h 0.61 >More info 0.66 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
55 root Dosed gold 0.67 >More info 0.59 >More info root No gold .125 mM gold 24 h roots Original data
56 0.125 mM gold 24 h 0.67 >More info 0.59 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
57 toc1-1-85hr 0.49 >More info 0.76 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
58 root protoplasts 40 mM NaCl 0.61 >More info 0.63 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
59 bak1-3 +Pep2 10h 0.62 >More info 0.62 >More info WT +Pep2 10h Pep2 Original data GEO bulk
60 Seedling KUA1-IOX est 0.65 >More info 0.58 >More info Seedling KUA1-IOX mock Original data
61 toc1-1-77hr 0.56 >More info 0.67 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
62 seedlings-week-old RECA1-overexpressing
transgenic		 0.63 >More info 0.60 >More info seedlings-week-old Col-0 seedlings Original data
63 csn5 (csn5a-2 csn5b) light 0.68 >More info 0.55 >More info WT light Original data GEO bulk
64 Fenclorim 4hr 0.61 >More info 0.61 >More info Acetone 4hr root Original data GEO bulk
65 9m.KCl 0.63 >More info 0.59 >More info To. KCl 14 day old Roots Original data GEO bulk
66 oligomycin 1 h 0.50 >More info 0.72 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
67 toc1-1-81hr 0.53 >More info 0.69 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
68 6h +Pi -0.57 >More info -0.65 >More info 6h -Pi root Original data GEO bulk
69 Protoplast Induced 0.50 >More info 0.72 >More info Uninduced Original data GEO bulk
70 flu over-tAPX 0.51 >More info 0.71 >More info WT Col Original data GEO bulk
71 IAA/inhibitor B Treated 0.48 >More info 0.74 >More info IAA Treated Original data GEO bulk
72 4C 1h 0.46 >More info 0.76 >More info 4C 0h Original data GEO bulk
73 coi1-2 0.55 >More info 0.66 >More info Col-0 mock Whole seedling Original data GEO bulk
74 BLM+INA 0.58 >More info 0.63 >More info CK BLM and INA seedling Original data
75 (Col-0)+200 uM As 0.51 >More info 0.70 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
76 CMP 24hr 0.65 >More info 0.56 >More info Acetone 24hr root Original data GEO bulk
77 1h +Pi -0.51 >More info -0.69 >More info 1h -Pi root Original data GEO bulk
78 plant (Col-0) 4h phytoprostane A1 0.57 >More info 0.63 >More info plant (tga2-5-6) 4h control Original data GEO bulk
79 WT 3h -P 0.46 >More info 0.74 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
80 rosette Dark Wounded 0.52 >More info 0.67 >More info rosette Dark Control Original data GEO bulk
81 MPK6 ox Root Hypoxia 0.53 >More info 0.66 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
82 Col-0 Root 100 mM ATP 30 min 0.56 >More info 0.62 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
83 (Col-0)+100 uM As 0.50 >More info 0.68 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
84 oas-a1.1 Cd 24h 0.44 >More info 0.74 >More info Cd 24h root Shoot Original data GEO bulk
85 Rose Bengal 0.5 uM 0.44 >More info 0.74 >More info Control RB and PER Rose Bengal Original data
86 WT 2-4h Xanthomonas 0.57 >More info 0.60 >More info WT T0 Original data GEO bulk
87 cop1 Seedling BL+ABA 0.61 >More info 0.56 >More info WT Seedling BL+ABA Original data GEO bulk
88 DFPM 0.61 >More info 0.56 >More info control Original data GEO bulk
89 WT H2O2 3h 0.53 >More info 0.63 >More info WT water 3h 3h_H2O2 Original data GEO bulk
90 whole roots -Fe 72 hour 0.57 >More info 0.59 >More info whole roots standard Original data GEO bulk
91 seedling 6h after HZE WT 0.57 >More info 0.59 >More info seedling day 1 unirradiated WT 6h Original data
92 Fe starvation 72 h 0.57 >More info 0.59 >More info Control Original data GEO bulk
93 gai Control 0.59 >More info 0.57 >More info Laer Control leaf discs Original data GEO bulk
94 Nicotinamide-57hr 0.58 >More info 0.58 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
95 Leaf wounded 0.42 >More info 0.74 >More info Leaf control vegetative leaf Original data GEO bulk
96 dorn1-1 Root 100 mM ATP 30 min -0.42 >More info -0.74 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
97 Nicotinamide-81hr 0.56 >More info 0.59 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
98 Roots Cd -0.60 >More info -0.55 >More info Roots control Cd Root Original data GEO bulk
99 Col-Luc WT 3h antimycin A 0.53 >More info 0.62 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
100 root - 01% oxygen - 48h 0.44 >More info 0.71 >More info root - 21% oxygen - 48h Original data GEO bulk
101 35S::PI ap3-3 35S::AP-GR +DEX 0.43 >More info 0.72 >More info 0hr DEX Original data GEO bulk
102 PNO8 3 h 0.54 >More info 0.60 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
103 P.p 30hai 0.66 >More info 0.48 >More info At-Control roots Original data GEO bulk
104 toc1-1-57hr 0.56 >More info 0.58 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
105 Mutant axr3-1 (IAA) 0.43 >More info 0.71 >More info Col (IAA) Original data GEO bulk
106 WT chitooctaose 0.56 >More info 0.57 >More info WT water Original data GEO bulk
107 oas-a1.1 Cd 18h 0.49 >More info 0.64 >More info Cd 18h root Root Original data GEO bulk
108 Hydrogen Peroxide 500 uM 0.47 >More info 0.66 >More info Control RB and PER Hydrogen Peroxide Original data
109 CeO2 germinant -0.48 >More info -0.65 >More info Millipore Water germinant CeO2 seedling Original data
110 P.p 6hai 0.64 >More info 0.48 >More info At-Control roots Original data GEO bulk
111 IAA/inhibitor A Treated 0.56 >More info 0.56 >More info IAA Treated Original data GEO bulk
112 csn3-1 light 0.60 >More info 0.52 >More info WT light Original data GEO bulk
113 (Ws-2)+100 uM As 0.53 >More info 0.59 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
114 root stele 40 mM NaCls 0.61 >More info 0.51 >More info root stele Original data GEO bulk
115 IMI 4mM 0.59 >More info 0.53 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
116 WT-Dry 0.49 >More info 0.63 >More info WT-CK dehydration treatment 1h Original data
117 Mutant axr3-1 0.44 >More info 0.67 >More info Col Original data GEO bulk
118 whole roots 140 mM NaCl 1 hour 0.62 >More info 0.49 >More info whole roots standard Original data GEO bulk
119 Whole root - low pH 12H 0.51 >More info 0.60 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
120 WT 24H Cold 0.52 >More info 0.59 >More info WT control Original data GEO bulk
121 Sulfometuron EC50 0.54 >More info 0.57 >More info Carrier Original data GEO bulk
122 Light 0.38 >More info 0.73 >More info Control Original data GEO bulk
123 R. solani AG2-1 0.47 >More info 0.64 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
124 LTN008-2 aza-dc 0.59 >More info 0.51 >More info LTN012-2 Mock Original data
125 root - 01% oxygen - 2h 0.30 >More info 0.80 >More info root - 21% oxygen - 2h Original data GEO bulk
126 Col0-PsmES4326-24hpi 0.49 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
127 WT NAA 1h 0.54 >More info 0.55 >More info WT 0h Leaf tissue Original data GEO bulk
128 Nicotinamide-53hr 0.53 >More info 0.56 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
129 whole roots -Fe 48 hour 0.54 >More info 0.55 >More info whole roots standard Original data GEO bulk
130 rosette Light Wounded 0.43 >More info 0.66 >More info rosette Light Control Original data GEO bulk
131 Col-0 under 4 days salt 0.56 >More info 0.52 >More info Col-0 under control 4 days salt treatment rosette Original data
132 seedlings +5AC 0.61 >More info 0.47 >More info control seedlings 10-day old whole seedling Original data GEO bulk
133 safener treated 0.52 >More info 0.56 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
134 4d red light grown hmr-5 seedlings 0.55 >More info 0.53 >More info 4d red light grown WT(Col-0) seedlings Original data
135 GST 4 h (leaf) 0.57 >More info 0.51 >More info Mock 4 h (leaf) Original data Elicitor treatments
136 pho1 0.44 >More info 0.64 >More info Col2WT Original data GEO bulk
137 Chemically 0.40 >More info 0.68 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
138 npr1-1 SA -0.54 >More info -0.53 >More info Col-0 SA complete seedling Original data
139 15m.KCl 0.54 >More info 0.53 >More info To. KCl 14 day old Roots Original data GEO bulk
140 toc1-1-73hr 0.43 >More info 0.64 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
141 pepr1-1 Pepr2-3 +Pep2 2h -0.46 >More info -0.61 >More info WT +Pep2 2h Pep2 Original data GEO bulk
142 gun1gun5 far-red pretreated -0.45 >More info -0.62 >More info WT far-red pretreated Original data GEO bulk
143 seedling 12h after HZE WT 0.45 >More info 0.62 >More info seedling day 1 unirradiated WT 12h Original data
144 whole roots 140 mM NaCl 30 minutes 0.57 >More info 0.50 >More info whole roots standard Original data GEO bulk
145 root cells columella root cap -Fe 0.59 >More info 0.48 >More info whole roots standard Original data GEO bulk
146 TA induced 0.47 >More info 0.60 >More info Methanol TA Suspension cells Original data GEO bulk
147 phyB Rc50 0.54 >More info 0.52 >More info WT(Ler) Rc50 Original data GEO bulk
148 csn4-1 mutant 0.60 >More info 0.46 >More info WT dark Original data GEO bulk
149 Tsu -Fe 24h Roots 0.50 >More info 0.56 >More info Tsu +Fe 24h Roots Original data GEO bulk
150 Tsu-1 -Fe 24h 0.50 >More info 0.56 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
151 chito-tetramer 0.49 >More info 0.57 >More info Col Mock Original data GEO bulk
152 Heat shock optimum 0.41 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
153 GA 0.45 >More info 0.61 >More info none GA Rosette Original data GEO bulk
154 Cor 10h 0.45 >More info 0.61 >More info Mock 10h Cor Original data GEO bulk
155 A. thaliana-A. lyrata hybrid -0.50 >More info -0.55 >More info A. thaliana mature leaves before flowering Original data GEO bulk
156 protoplasted roots pH4.6 0.54 >More info 0.51 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
157 root longitudinal zone-4 pH 4.6 0.51 >More info 0.54 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
158 WT 6H Cold 0.50 >More info 0.55 >More info WT control Original data GEO bulk
159 WT flg22 2h 0.55 >More info 0.50 >More info WT 0h Leaf tissue Original data GEO bulk
160 chito-octamer 0.45 >More info 0.60 >More info Col Mock Original data GEO bulk
161 Fenclorim 24hr 0.58 >More info 0.46 >More info Acetone 24hr root Original data GEO bulk
162 BLM 0.51 >More info 0.53 >More info CK BLM seedling Original data
163 CMV-WT 0.51 >More info 0.53 >More info Mock-At Aerial tissues Original data GEO bulk
164 DUO1 induced 24h 0.51 >More info 0.53 >More info 24hr-not-induced whole plant Original data GEO bulk
165 embryo paclobutrazol 0.58 >More info 0.46 >More info embryo-control paclobutrazol embryo Original data GEO bulk
166 seedling 1.5h after Gamma WT 0.63 >More info 0.41 >More info seedling day 1 unirradiated WT 1.5h Original data
167 Col in Pi deficiency medium 0.36 >More info 0.68 >More info Col in control medium root Original data GEO bulk
168 max4 hypocotyl 0.49 >More info 0.55 >More info wt hypocotyl hypocotyl Original data GEO bulk
169 seedlings protease IV 0.46 >More info 0.58 >More info seedlings nontreated control whole seedling Original data
170 SCR-GR Time 12H Dex 0.59 >More info 0.44 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
171 P.p 2.5hai 0.52 >More info 0.51 >More info At-Control roots Original data GEO bulk
172 upf3 0.51 >More info 0.52 >More info WT whole plant Original data GEO bulk
173 Osmotic Stress 24 h (root) 0.60 >More info 0.43 >More info Stress mock 24 h (root) Original data Stress treatments
174 ARR22-ox (t-zeatin 3 h) 0.54 >More info 0.49 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
175 QK HS 0.46 >More info 0.57 >More info QK control heat shocked seedling Original data GEO bulk
176 shoots bhlh100/101 0uM Fe 0.55 >More info 0.47 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
177 toc1-1-49hr 0.52 >More info 0.50 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
178 Dark 40min pls UV-AB 5min 0.52 >More info 0.50 >More info Dark 45 min Original data Light treatments
179 Salt Stress 24 h (root) 0.49 >More info 0.53 >More info Stress mock 24 h (root) Original data Stress treatments
180 pepr1-1 Pepr2-3 +Pep2 10h -0.48 >More info -0.54 >More info WT +Pep2 10h Pep2 Original data GEO bulk
181 seedling -S Exp 0.33 >More info 0.69 >More info seedling FN Exp seedling Original data
182 ice1 control 0.58 >More info 0.43 >More info WT control Original data GEO bulk
183 csn5 (csn5a-2 csn5b) dark 0.55 >More info 0.46 >More info WT dark Original data GEO bulk
184 bbx24 in Simulated Shade -0.58 >More info -0.43 >More info WT in simulated shade shade seedling Original data
185 Wounding Stress3 h (root) -0.52 >More info -0.48 >More info Stress mock 3 h (root) Original data Stress treatments
186 Primisulfuron EC50 0.52 >More info 0.48 >More info Carrier (primisulfuron) Original data GEO bulk
187 HSP90 Reduced RNAi-A2 0.51 >More info 0.49 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
188 Root submergence 24h 0.43 >More info 0.57 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
189 low CO2 + light 0.38 >More info 0.62 >More info normal CO2 + light Original data GEO bulk
190 35S:RPS4 eds1-2 2h -0.38 >More info -0.62 >More info 35S:RPS4 2h leaves Original data
191 RRE2 Chitin 0.52 >More info 0.47 >More info Chitin Original data GEO bulk
192 Nicotinamide-49hr 0.52 >More info 0.47 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
193 Triazolopyrimidine EC50 0.52 >More info 0.47 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
194 mp-B4149 mutant IAA 0.56 >More info 0.43 >More info GR-bdl IAA Original data GEO bulk
195 GST NPP1 4 h (leaf) 0.48 >More info 0.51 >More info Mock 4 h (leaf) Original data Elicitor treatments
196 ein5-1 ski2-3 0.49 >More info 0.50 >More info Col-0 aerial tissue Original data
197 Root dark control 24h 0.41 >More info 0.58 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
198 CMV-A2b mutant 0.38 >More info 0.61 >More info Mock-At Aerial tissues Original data GEO bulk
199 abi1 hypocotyl 0.26 >More info 0.73 >More info Ler hypocotyl hypocotyl Original data GEO bulk
200 WT 90-105 min Xanthomonas 0.47 >More info 0.52 >More info WT T0 Original data GEO bulk
201 35S:RPS4 eds1-2 8h -0.48 >More info -0.51 >More info 35S:RPS4 8h leaves Original data
202 P.p 10.5hai 0.57 >More info 0.41 >More info At-Control roots Original data GEO bulk
203 HSP90 Reduced RNAi-B1 0.53 >More info 0.45 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
204 ABA DFPM 0.53 >More info 0.45 >More info control Original data GEO bulk
205 csn3-1 dark 0.55 >More info 0.43 >More info WT dark Original data GEO bulk
206 root cells endodermis and quiescent center -Fe 0.48 >More info 0.50 >More info whole roots standard Original data GEO bulk
207 WT 3H Cold 0.33 >More info 0.65 >More info WT control Original data GEO bulk
208 17 0h total -0.46 >More info -0.52 >More info 27 0h total whole seedlings floating on MS medium Original data
209 FLIGHT TAGESB plate6 ROOTS 0.47 >More info 0.51 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
210 embryo ABA 0.54 >More info 0.43 >More info embryo-control ABA embryo Original data GEO bulk
211 AtGATA2ox 0.53 >More info 0.44 >More info Col seedling Original data GEO bulk
212 24h +Pi -0.54 >More info -0.42 >More info 24h -Pi root Original data GEO bulk
213 Laer treat paclobutrazol (PAC) 0.55 >More info 0.41 >More info Laer Control leaf discs Original data GEO bulk
214 Col whole leaf 5dpi 0.45 >More info 0.51 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
215 cat2-short-day 2d 0.36 >More info 0.60 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
216 Botrytis cinerea 48h 0.42 >More info 0.54 >More info control 48h Original data GEO bulk
217 Heat shock 20%Inhibition 0.40 >More info 0.55 >More info Heat shock baseline Photosynthesis at 20% inhibition from optimum leaf first fully expanded Original data GEO bulk
218 Osmotic Stress 24 h (shoot) 0.51 >More info 0.44 >More info Stress mock 24 h (shoot) Original data Stress treatments
219 -Sulfate 24 h 0.26 >More info 0.69 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
220 WT heat shock 0.29 >More info 0.66 >More info WT untreated above-ground parts Original data GEO bulk
221 Transgenic LEC2GR Seedling 1h Dex 0.44 >More info 0.51 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
222 aba1 hypocotyl 0.36 >More info 0.59 >More info Ler hypocotyl hypocotyl Original data GEO bulk
223 Whole root - S 3H 0.39 >More info 0.55 >More info Whole root - S 0H Original data GEO bulk
224 AvrRpt2 Col-0 6hpi 0.50 >More info 0.44 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
225 nia1nia2 0.53 >More info 0.41 >More info Col-0 whole seedlings Original data GEO bulk
226 Col ozone 3h 0.31 >More info 0.63 >More info Col clean-air 3h ozone Original data GEO bulk
227 cpr5 0.44 >More info 0.50 >More info WT(COL) Original data GEO bulk
228 Elevated CO2 AMPLE N NIGHT 0.43 >More info 0.51 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
229 aox1a(line) MLD stressed 0.44 >More info 0.50 >More info WT(Col0) MLD stressed (control aox1a) leaf Original data
230 nia1nia2noa1-2 0.56 >More info 0.37 >More info Col-0 whole seedlings Original data GEO bulk
231 8hr-pH4.5 0.39 >More info 0.54 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
232 Col-0-avrB-6h 0.40 >More info 0.53 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
233 Laer pretreat GA+JA Flg22 0h 0.50 >More info 0.43 >More info Laer pretreat water control leaf discs Original data GEO bulk
234 WT NAA/flg 1h 0.51 >More info 0.42 >More info WT 0h Leaf tissue Original data GEO bulk
235 ahg2-1sid2-2 0.31 >More info 0.62 >More info WT (Col) control Original data GEO bulk
236 seedling h S Exp -0.33 >More info -0.60 >More info seedling -S Exp seedling Original data
237 root columella root cap 40 mM NaCl 0.54 >More info 0.38 >More info root columella root cap Original data GEO bulk
238 Cold Stress 24 h (shoot) 0.40 >More info 0.52 >More info Stress mock 24 h (shoot) Original data Stress treatments
239 IXB induced 0.39 >More info 0.53 >More info Methanol IXB Suspension cells Original data GEO bulk
240 Col BTH 0.25 >More info 0.67 >More info Col rosettes Original data GEO bulk
241 FHY3p dark+DEX -0.57 >More info -0.35 >More info FHY3p dark+mock Original data GEO bulk
242 anac017-2 water 3h 0.31 >More info 0.61 >More info WT water 3h 3h_water Original data GEO bulk
243 4C 2h(SOIL) 0.32 >More info 0.60 >More info 4C 0h(SOIL) Original data GEO bulk
244 WT 30μM phosphate 8 hours. -0.35 >More info -0.57 >More info WT control (not supplemented). Original data
245 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.55 >More info 0.36 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
246 Lipopolysaccaride4 h (leaf) 0.54 >More info 0.37 >More info Mock 4 h (leaf) Original data Elicitor treatments
247 SA 4mM 0.52 >More info 0.39 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
248 HopZ1a treated 0.39 >More info 0.52 >More info col Original data GEO bulk
249 siliques AtHb1 control 0.39 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
250 ckh1 CK200 0.38 >More info 0.53 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
251 bak1-3 +Pep2 2h 0.39 >More info 0.52 >More info WT +Pep2 2h Pep2 Original data GEO bulk
252 GO5; 0h switch to ambient CO2 concentrations; -0.39 >More info -0.52 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
253 HS 0.31 >More info 0.60 >More info noneHS Original data GEO bulk
254 Whole root - low pH 24H 0.51 >More info 0.39 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
255 Col-0 DCA 48h 0.37 >More info 0.53 >More info Col-0 MOCK 48h Original data GEO bulk
256 SCR-GR Time 1H Dex 0.36 >More info 0.54 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
257 bHLH122 ox -0.30 >More info -0.60 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
258 root hypoxia pGL2 0.34 >More info 0.55 >More info root hypoxia total hypoxia root Original data GEO bulk
259 MG132 3 h 0.39 >More info 0.50 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
260 root - 04% oxygen - 2h 0.04 >More info 0.85 >More info root - 21% oxygen - 2h Original data GEO bulk
261 wnk8-1 untreated -0.36 >More info -0.53 >More info Col-0 untreated seedlings Original data GEO bulk
262 WT+chitooctaose 0.25 >More info 0.64 >More info WT+water chitooctaose seedlings Original data GEO bulk
263 Aerobic e1 ate2 0.16 >More info 0.73 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
264 atsf1-2 mutant seedling 0.39 >More info 0.50 >More info Col-0 seedling seedlings Original data
265 sfr6 drought -0.30 >More info -0.59 >More info WT drought All aerial tissue Original data GEO bulk
266 WT 1wk -P 0.33 >More info 0.55 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
267 root hypoxia pPEP 0.38 >More info 0.50 >More info root hypoxia total hypoxia root Original data GEO bulk
268 Laer pretreat GA Flg22 1h 0.17 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
269 Leaf systemic 0.26 >More info 0.62 >More info Leaf control vegetative leaf Original data GEO bulk
270 vte2 leaves 48h LT 0.38 >More info 0.50 >More info Col leaves 48h LT 48h 9-11th adult leaves Original data
271 CLO 4mM 0.59 >More info 0.29 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
272 gpa1 -ABA GC -0.31 >More info -0.57 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
273 Phaseolicola 2 h (leaf) 0.34 >More info 0.53 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
274 Selenate (shoot) 0.34 >More info 0.53 >More info Ws (shoot) Original data GEO bulk
275 cell culture 4 h phytoprostane A1 0.34 >More info 0.53 >More info cell culture 4 h control Original data GEO bulk
276 Shoot Selenate 0.34 >More info 0.53 >More info Shoot control 40 micromolar selenate Shoot Original data GEO bulk
277 Leafminer damaged seedlings 0.31 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
278 Mutant sav3-2 (WL) 0.24 >More info 0.63 >More info Col-0 (WL) Original data GEO bulk
279 til1-1 22C 0.27 >More info 0.60 >More info Col-0 22C Original data GEO bulk
280 21h-DC3000 hrpA -0.24 >More info -0.63 >More info 21h-DC3000 leaves Original data GEO bulk
281 HopZ1a treated ulp1c ulp1d 0.35 >More info 0.52 >More info col Original data GEO bulk
282 cat2-short-day 4d 0.22 >More info 0.65 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
283 WT cold 12 h 0.36 >More info 0.51 >More info WT cold 0h GSM955987 seedlings Original data GEO bulk
284 tor mutant glucose 0.35 >More info 0.52 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
285 sav3-2 light 0.24 >More info 0.63 >More info Col-0 light seedlings Original data GEO bulk
286 ex2 flu dark 8hours/30 minute light 0.29 >More info 0.58 >More info col dark 8hours/30 minute light Original data GEO bulk
287 gul2-1 mutant 0.54 >More info 0.32 >More info WT 7 day-old whole seedlings Original data
288 sex1-3 0.33 >More info 0.53 >More info Col-WT leaves Original data GEO bulk
289 seedling 24h after Gamma WT 0.51 >More info 0.35 >More info seedling day 2 unirradiated WT 24h Original data
290 SLWF infested 0.61 >More info 0.25 >More info SLWF uninfested rosette tissue Original data GEO bulk
291 bri1-116 0.13 >More info 0.73 >More info Col seedling Original data GEO bulk
292 Heat shock 30%Inhibition 0.36 >More info 0.50 >More info Heat shock baseline Photosynthesis at 30% inhibition from optimum leaf first fully expanded Original data GEO bulk
293 GA4 3 h (ga1 seed) 0.57 >More info 0.29 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
294 K starvation (shoot) 0.34 >More info 0.51 >More info Ws (shoot) Original data GEO bulk
295 Shoot -K 0.34 >More info 0.51 >More info Control-shoot Original data GEO bulk
296 vtc2-1 -0.35 >More info -0.50 >More info Col-0 whole plant Original data GEO bulk
297 rsa3-1 Na 24h 0.35 >More info 0.50 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
298 desiccated mature pollen grains -0.22 >More info -0.63 >More info hydrated pollen grains Original data GEO bulk
299 cpctry 0.23 >More info 0.62 >More info Col Original data GEO bulk
300 root control pPEP 0.33 >More info 0.51 >More info root control total control root Original data GEO bulk
301 12m.KCl 0.30 >More info 0.54 >More info To. KCl 14 day old Roots Original data GEO bulk
302 cat2-2; 8h switch to ambient CO2 concentrations; 0.32 >More info 0.52 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
303 Red/FR Light45min 0.00 >More info 0.84 >More info FarRed Light 45min Original data Light treatments
304 root cells cortex 140mM NaCl 8 hours 0.51 >More info 0.32 >More info root cells cortex standard 1 hour root cells cortex Original data
305 root - 04% oxygen - 48h 0.07 >More info 0.76 >More info root - 21% oxygen - 48h Original data GEO bulk
306 glk1 glk2 GLK1-GR +DEX 24h -0.32 >More info -0.51 >More info glk1 glk2 GLK1-GR mock 24h dexamethasone whole seedlings Original data GEO bulk
307 wavy 0.32 >More info 0.51 >More info WT Original data GEO bulk
308 16h Col-0 0.31 >More info 0.52 >More info 00h Col-0 Original data GEO bulk
309 35S::Zat12+H2O2 0.53 >More info 0.29 >More info WT+H2O2 H2O2 Original data GEO bulk
310 npr1 sni1 brca2a SA -0.28 >More info -0.54 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
311 Shoot -Cs 0.27 >More info 0.55 >More info Control-shoot Original data GEO bulk
312 protoplasts T1 [flg22] 0.27 >More info 0.54 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
313 Aerobic prt6 0.14 >More info 0.67 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
314 GO5; 8h switch to ambient CO2 concentrations; 0.28 >More info 0.53 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
315 Col-0 2h NAA 0.52 >More info 0.28 >More info Col-0 6h MOCK Original data GEO bulk
316 npr1-3 DCA 48h 0.26 >More info 0.54 >More info npr1-3 MOCK 48h Original data GEO bulk
317 OsSAP11 expressing -0.30 >More info -0.50 >More info WT seedlings Original data GEO bulk
318 npr1 sni1 SA 0.29 >More info 0.50 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
319 20h Col-0 0.24 >More info 0.55 >More info 00h Col-0 Original data GEO bulk
320 light-hs 0.19 >More info 0.60 >More info light-control seedling Original data
321 ISOXABEN -0.28 >More info -0.50 >More info CON 0.1 mM ISOXABEN Original data GEO bulk
322 leaf13 0.26 >More info 0.52 >More info unwounded leaves none Original data GEO bulk
323 clf-28 swn-7 0.50 >More info 0.27 >More info Col whole plant Original data GEO bulk
324 WT Shoot-Pi 0.24 >More info 0.53 >More info WT Shoot+Pi shoots Original data GEO bulk
325 Kas-1 -Fe 24h -0.21 >More info -0.56 >More info Kas-1 +Fe 24h roots Original data GEO bulk
326 Kas -Fe 24h Roots -0.21 >More info -0.56 >More info Kas +Fe 24h Roots Original data GEO bulk
327 INA 0.25 >More info 0.52 >More info CK INA seedling Original data
328 dense canopy 0.20 >More info 0.56 >More info single (control) petiole Original data GEO bulk
329 WT no Pi 0.22 >More info 0.54 >More info WT complete seedlings Original data
330 short 8-degree- 0.25 >More info 0.50 >More info control short Original data GEO bulk
331 root - 01% oxygen - 30min 0.13 >More info 0.61 >More info root - 21% oxygen - 30min Original data GEO bulk
332 sim smr1 -0.23 >More info -0.51 >More info WT seedling Original data GEO bulk
333 IAA7mII over-expressor IAA Treated 0.03 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
334 35S:PCO1 hypoxia -0.20 >More info -0.52 >More info WT hypoxia whole rosette Original data
335 root - 08% oxygen - 30min -0.03 >More info 0.73 >More info root - 21% oxygen - 30min Original data GEO bulk
336 root - 04% oxygen - 30min -0.01 >More info 0.71 >More info root - 21% oxygen - 30min Original data GEO bulk
337 root - 08% oxygen - 2h -0.03 >More info 0.72 >More info root - 21% oxygen - 2h Original data GEO bulk
338 ANOXIA -0.15 >More info -0.53 >More info ANOXIA+SUCROSE Original data GEO bulk
339 amiRAP aerobic -0.10 >More info -0.58 >More info WT aerobic aerobic Original data GEO bulk
340 noa1-2 0.51 >More info 0.15 >More info Col-0 whole seedlings Original data GEO bulk
341 ABA control 0.52 >More info 0.13 >More info No ABA control Original data GEO bulk
342 Blue Light 45 min -0.15 >More info -0.50 >More info White Light 45min Original data Light treatments
343 20m.KCl -0.14 >More info -0.51 >More info To. KCl 14 day old Roots Original data GEO bulk
344 opr3 OPDA 0.5 h 0.15 >More info 0.50 >More info opr3 0 h Original data GEO bulk
345 Shoot -P 0.06 >More info 0.59 >More info Shoot Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
346 WT 1mM phosphate 8 hours. -0.08 >More info -0.57 >More info WT control (not supplemented). Original data
347 pepr1-1 Pepr2-3 untreated 0.14 >More info 0.50 >More info WT untreated untreated Original data GEO bulk
348 Shoot apex inflorescence (after bolting) -0.03 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
349 seed germinating in countinuous light 24h SL -0.06 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
350 AsAKiin11 T2 0.05 >More info 0.54 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
351 35SAvr 0.01 >More info 0.56 >More info Ecotype Col Original data GEO bulk
352 Polysomal RNA 35S:AtCSP1-FH1 -0.04 >More info -0.52 >More info Polysomal RNA csp1 12h non-stress rosettes Original data GEO bulk
353 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
354 Col-0 24hpi A. brassicicola 0.53 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
355 siliques WT hypoxia 0.52 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
356 seedling 3h after HZE WT 0.51 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
357 mtf1-1 -0.01 >More info -0.52 >More info Col0 root Original data
358 HairpinZ 4 h (leaf) 0.54 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
359 FarRed Light 45min 0.05 >More info -0.55 >More info White Light 45min Original data Light treatments
360 clf-28 -0.52 >More info 0.04 >More info Col whole plant Original data GEO bulk
361 vte2-1 1d vernalization -0.09 >More info 0.56 >More info WT 1d vernalization Original data GEO bulk
362 Col PSTDC3000 24h 0.52 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
363 4d red light grown hmr-22 seedlings 0.59 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data