4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on FLIGHT TAGESB plate6 ROOTS
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Score Experiment Correlation from
FLIGHT TAGESB plate6 ROOTS		 Correlation to
FLIGHT TAGESB plate6 ROOTS		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 FLIGHT TAGESB plate6 ROOTS 1.00 >More info 1.00 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
2 Selenate (root) 0.78 >More info 0.73 >More info Ws (root) Original data GEO bulk
3 Root Selenate 0.78 >More info 0.73 >More info Root control 40 micromolar selenate Root Original data GEO bulk
4 abi1 hypocotyl 0.70 >More info 0.77 >More info Ler hypocotyl hypocotyl Original data GEO bulk
5 aba1 hypocotyl 0.74 >More info 0.72 >More info Ler hypocotyl hypocotyl Original data GEO bulk
6 WT 3H Cold 0.66 >More info 0.78 >More info WT control Original data GEO bulk
7 Leaf wounded 0.67 >More info 0.75 >More info Leaf control vegetative leaf Original data GEO bulk
8 Protoplast Induced 0.67 >More info 0.74 >More info Uninduced Original data GEO bulk
9 myb61 xylem 0.70 >More info 0.69 >More info wt xylem xylem Original data GEO bulk
10 TNT-seedlings 0.57 >More info 0.81 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
11 myb61 cork 0.72 >More info 0.65 >More info wt cork cork Original data GEO bulk
12 chito-tetramer 0.77 >More info 0.59 >More info Col Mock Original data GEO bulk
13 chito-octamer 0.78 >More info 0.58 >More info Col Mock Original data GEO bulk
14 root protoplasts 40 mM NaCl 0.74 >More info 0.61 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
15 max4 hypocotyl 0.75 >More info 0.60 >More info wt hypocotyl hypocotyl Original data GEO bulk
16 35S:RPS4 eds1-2 2h -0.64 >More info -0.70 >More info 35S:RPS4 2h leaves Original data
17 4C 2h(SOIL) 0.58 >More info 0.76 >More info 4C 0h(SOIL) Original data GEO bulk
18 FLIGHT TAGES 2B plate6 HYPOCOTYLS 0.71 >More info 0.62 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
19 rosette Light Wounded 0.70 >More info 0.61 >More info rosette Light Control Original data GEO bulk
20 WT no Pi 0.79 >More info 0.52 >More info WT complete seedlings Original data
21 WT-Dry 0.63 >More info 0.67 >More info WT-CK dehydration treatment 1h Original data
22 Cycloheximide 3 h 0.77 >More info 0.53 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
23 rosette Dark Wounded 0.73 >More info 0.56 >More info rosette Dark Control Original data GEO bulk
24 root cells endodermis and quiescent center -Fe 0.70 >More info 0.59 >More info whole roots standard Original data GEO bulk
25 1h +Pi -0.60 >More info -0.69 >More info 1h -Pi root Original data GEO bulk
26 npr1 sni1 brca2a SA -0.71 >More info -0.58 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
27 WT+chitooctaose 0.67 >More info 0.62 >More info WT+water chitooctaose seedlings Original data GEO bulk
28 NJ15 0.69 >More info 0.58 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
29 whole roots 140 mM NaCl 30 minutes 0.63 >More info 0.63 >More info whole roots standard Original data GEO bulk
30 GA 0.70 >More info 0.56 >More info none GA Rosette Original data GEO bulk
31 root cells columella root cap -Fe 0.70 >More info 0.56 >More info whole roots standard Original data GEO bulk
32 20m.KCl 0.55 >More info 0.69 >More info To. KCl 14 day old Roots Original data GEO bulk
33 root cells -Fe 0.67 >More info 0.57 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
34 axr1 hypocotyl 0.72 >More info 0.51 >More info wt hypocotyl hypocotyl Original data GEO bulk
35 root cells stele -Fe 0.69 >More info 0.54 >More info whole roots standard Original data GEO bulk
36 protoplasted roots pH4.6 0.63 >More info 0.60 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
37 Leafminer damaged seedlings 0.66 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
38 WT chitooctaose 0.69 >More info 0.53 >More info WT water Original data GEO bulk
39 seedling 6h after HZE WT 0.73 >More info 0.48 >More info seedling day 1 unirradiated WT 6h Original data
40 WT 6H Cold 0.65 >More info 0.56 >More info WT control Original data GEO bulk
41 npr1 sni1 SA 0.70 >More info 0.50 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
42 seedling 12h after HZE WT 0.68 >More info 0.51 >More info seedling day 1 unirradiated WT 12h Original data
43 AgNO3 3 h 0.59 >More info 0.60 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
44 Col leaf 100mM NaCl 0.68 >More info 0.49 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
45 whole roots 140 mM NaCl 1 hour 0.62 >More info 0.55 >More info whole roots standard Original data GEO bulk
46 Col leaf 100mM NaCl 0.68 >More info 0.49 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
47 Col 100mM NaCl 0.68 >More info 0.49 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
48 root callus inducing medium 24h -0.68 >More info -0.49 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
49 root callus inducing medium 48 h -0.68 >More info -0.48 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
50 Roots Cd -0.72 >More info -0.44 >More info Roots control Cd Root Original data GEO bulk
51 flu dark 8hours/30 minute light 0.47 >More info 0.69 >More info col dark 8hours/30 minute light Original data GEO bulk
52 WT 3h -P 0.52 >More info 0.63 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
53 bHLH122 ox -0.62 >More info -0.53 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
54 root callus inducing medium 12 h -0.68 >More info -0.46 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
55 sfr6 drought -0.62 >More info -0.52 >More info WT drought All aerial tissue Original data GEO bulk
56 4C 1h 0.53 >More info 0.61 >More info 4C 0h Original data GEO bulk
57 Salt Stress 24 h (root) 0.68 >More info 0.46 >More info Stress mock 24 h (root) Original data Stress treatments
58 inhibitor B Treated 0.57 >More info 0.57 >More info Negative Control Original data GEO bulk
59 AtLysM RLK1 mutant chitooctaose -0.65 >More info -0.48 >More info WT chitooctaose Original data GEO bulk
60 IAA/inhibitor B Treated 0.51 >More info 0.62 >More info IAA Treated Original data GEO bulk
61 seedling 24h after HZE atm-1 0.64 >More info 0.48 >More info seedling day 2 unirradiated atm-1 24h Original data
62 Light 0.60 >More info 0.52 >More info Control Original data GEO bulk
63 root Dosed gold 0.62 >More info 0.50 >More info root No gold .125 mM gold 24 h roots Original data
64 ex2 flu dark 8hours/30 minute light 0.52 >More info 0.60 >More info col dark 8hours/30 minute light Original data GEO bulk
65 FLIGHT TAGESB plate6 SHOOTS 0.74 >More info 0.38 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
66 0.125 mM gold 24 h 0.62 >More info 0.50 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
67 Heat shock optimum 0.47 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
68 flu 0.66 >More info 0.45 >More info WT Col Original data GEO bulk
69 WT drought 0.67 >More info 0.44 >More info WT control All aerial tissue Original data GEO bulk
70 IXB induced 0.53 >More info 0.58 >More info Methanol IXB Suspension cells Original data GEO bulk
71 OsSAP11 expressing -0.57 >More info -0.54 >More info WT seedlings Original data GEO bulk
72 root cells epidermis and lateral root cap -Fe 0.64 >More info 0.47 >More info whole roots standard Original data GEO bulk
73 dorn1-1 Root 100 mM ATP 30 min -0.61 >More info -0.49 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
74 ein5-1 ski2-3 0.66 >More info 0.44 >More info Col-0 aerial tissue Original data
75 Col 8h 0.50 >More info 0.60 >More info Col CA Leaves Original data
76 WT+H2O2 0.54 >More info 0.55 >More info WT H2O2 Original data GEO bulk
77 flu over-tAPX 0.64 >More info 0.45 >More info WT Col Original data GEO bulk
78 Rsch 8h 0.49 >More info 0.60 >More info Rsch CA Leaves Original data
79 35S::MBF1c 0.62 >More info 0.46 >More info control Original data GEO bulk
80 oas-a1.1 Cd 24h 0.61 >More info 0.47 >More info Cd 24h root Shoot Original data GEO bulk
81 2hr continuous KNO3 SR cell 0.64 >More info 0.44 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
82 35S::RSL4 -0.56 >More info -0.51 >More info Col-0 Control root Original data GEO bulk
83 GiantCell Root -0.65 >More info -0.42 >More info Control Root laser captured giant cells Original data GEO bulk
84 rdr1-1 -0.71 >More info -0.36 >More info Col-0 Original data GEO bulk
85 Kas2 roots 2hr KNO3 nitrogen 0.62 >More info 0.44 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
86 phr1 Root-Pi 0.66 >More info 0.40 >More info WT Root+Pi roots Original data GEO bulk
87 OsRLCK253 expressing -0.57 >More info -0.49 >More info WT seedlings Original data GEO bulk
88 Col0-PsmES4326-24hpi 0.45 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
89 2hr transitory KNO3 PrR cell 0.64 >More info 0.41 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
90 2hr transitory KNO3 SR cell 0.61 >More info 0.44 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
91 Bur-0-30min IAA 0.61 >More info 0.44 >More info Bur-0h IAA whole plant Original data GEO bulk
92 HARAP aerobic -0.39 >More info -0.66 >More info WT aerobic aerobic Original data GEO bulk
93 CDB1-Knockout -0.44 >More info -0.61 >More info WT Original data GEO bulk
94 IRP1-OE-Ctrl--root 0.69 >More info 0.36 >More info COL-0-Ctrl--root root Original data
95 Differentiation 24h -0.64 >More info -0.40 >More info Differentiation 0h leaves Original data
96 opr3 OPDA 0.5 h 0.31 >More info 0.73 >More info opr3 0 h Original data GEO bulk
97 bbx24 in Simulated Shade -0.35 >More info -0.69 >More info WT in simulated shade shade seedling Original data
98 Kas -Fe 24h Roots -0.54 >More info -0.49 >More info Kas +Fe 24h Roots Original data GEO bulk
99 Kas-1 -Fe 24h -0.54 >More info -0.49 >More info Kas-1 +Fe 24h roots Original data GEO bulk
100 A. thaliana-A. lyrata hybrid -0.70 >More info -0.33 >More info A. thaliana mature leaves before flowering Original data GEO bulk
101 WT 30μM arsenate 8 hours. 0.55 >More info 0.48 >More info WT control (not supplemented). Original data
102 Differentiation 48h -0.62 >More info -0.41 >More info Differentiation 0h leaves Original data
103 Rose Bengal 0.5 uM 0.41 >More info 0.62 >More info Control RB and PER Rose Bengal Original data
104 hira-root -0.62 >More info -0.40 >More info WT-root root Original data
105 Differentiation 36h -0.62 >More info -0.40 >More info Differentiation 0h leaves Original data
106 inhibitor A Treated 0.53 >More info 0.49 >More info Negative Control Original data GEO bulk
107 root callus inducing medium 96 h -0.68 >More info -0.34 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
108 CMV-A2b mutant 0.62 >More info 0.39 >More info Mock-At Aerial tissues Original data GEO bulk
109 12m.KCl 0.54 >More info 0.47 >More info To. KCl 14 day old Roots Original data GEO bulk
110 5-Triiodobenzoic acid3 h 0.47 >More info 0.54 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
111 Chitin 0.60 >More info 0.40 >More info Col C Original data GEO bulk
112 IAA/inhibitor A Treated 0.57 >More info 0.43 >More info IAA Treated Original data GEO bulk
113 Col-0 37C 0.61 >More info 0.39 >More info Col-0 22C Original data GEO bulk
114 Col-0-30min IAA 0.67 >More info 0.33 >More info Col-0-0h IAA whole plant Original data GEO bulk
115 protoplasts T1 [flg22] 0.49 >More info 0.51 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
116 Col-0 RNAi-MBS2/mbs1-1 HL 3h -0.55 >More info -0.44 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
117 2hr KCl control SR cell 0.58 >More info 0.41 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
118 P.p 10.5hai 0.51 >More info 0.48 >More info At-Control roots Original data GEO bulk
119 P.p 30hai 0.56 >More info 0.43 >More info At-Control roots Original data GEO bulk
120 root - 08% oxygen - 48h -0.52 >More info -0.47 >More info root - 21% oxygen - 48h Original data GEO bulk
121 root cells cortex -Fe 0.72 >More info 0.26 >More info whole roots standard Original data GEO bulk
122 9 hr Hypoxia 1 hr recovery Total RNA 0.51 >More info 0.47 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
123 psad1-1 stn7-1 -0.64 >More info -0.34 >More info Col-0 rosette leaves Original data GEO bulk
124 Ts5 roots 2hr KCl control 0.62 >More info 0.36 >More info Col0 roots 2hr KCl control root Original data GEO bulk
125 Anoxia 0.51 >More info 0.47 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
126 FLIGHT TAGESB plate 0.77 >More info 0.21 >More info GROUND CONTROL TAGESB plate Original data
127 toc1-1-53hr 0.46 >More info 0.52 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
128 15m.KCl 0.45 >More info 0.53 >More info To. KCl 14 day old Roots Original data GEO bulk
129 SOS1 0mM NaCl 0.57 >More info 0.40 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
130 shoot-10 μM DEX- 6 hr 0.56 >More info 0.41 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
131 WT-NOCO2 INFECTED 0.69 >More info 0.28 >More info WT-MOCK Original data GEO bulk
132 seedlings-week-old RECA1-overexpressing
transgenic		 0.58 >More info 0.39 >More info seedlings-week-old Col-0 seedlings Original data
133 Col-0 DCA 48h 0.58 >More info 0.39 >More info Col-0 MOCK 48h Original data GEO bulk
134 Mutant axr3-1 (IAA) 0.47 >More info 0.50 >More info Col (IAA) Original data GEO bulk
135 Col-0 low oxygen 0.46 >More info 0.51 >More info Col-0 control low oxygen root Original data GEO bulk
136 9 hr Hypoxia 1 hr recovery IP RNA 0.56 >More info 0.40 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
137 P.p 6hai 0.53 >More info 0.43 >More info At-Control roots Original data GEO bulk
138 sid2-avrB-6h 0.54 >More info 0.42 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
139 vtc2 mature somatic embryo 0.64 >More info 0.32 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
140 bak1-3 +Pep2 2h 0.42 >More info 0.54 >More info WT +Pep2 2h Pep2 Original data GEO bulk
141 Mutant lwd1_lwd2 0.60 >More info 0.35 >More info Wildtype for phy mutants Original data GEO bulk
142 seedling 24h after HZE WT 0.61 >More info 0.34 >More info seedling day 2 unirradiated WT 24h Original data
143 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 0.60 >More info 0.35 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
144 Chitosan 3h Treatment 0.59 >More info 0.36 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
145 frb1 mutant 0.43 >More info 0.52 >More info WT whole seedling Original data GEO bulk
146 atmospheric CO2 high Mg shoot 0.68 >More info 0.26 >More info atmospheric CO2 normal Mg shoot Shoot Original data
147 Heat and anoxia 0.56 >More info 0.38 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
148 Col(gl) 0mM NaCl 0.51 >More info 0.43 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
149 npr1 sni1 ssn2 SA -0.62 >More info -0.32 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
150 GR:KAN1 DEX Shade 0.61 >More info 0.33 >More info GR:KAN1 Mock Shade seedlings Original data
151 Col(gl) leaf 0mM NaCl 0.51 >More info 0.43 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
152 Bur-0-3h IAA 0.58 >More info 0.36 >More info Bur-0h IAA whole plant Original data GEO bulk
153 BLM+INA 0.59 >More info 0.35 >More info CK BLM and INA seedling Original data
154 Col-Luc WT 3h antimycin A 0.58 >More info 0.36 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
155 tbf1-mock infiltration -0.62 >More info -0.32 >More info WT-mock infiltration water for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
156 Kas-1 -Fe 48h -0.63 >More info -0.30 >More info Kas-1 +Fe 24h roots Original data GEO bulk
157 Kas -Fe 48h Roots -0.63 >More info -0.30 >More info Kas +Fe 24h Roots Original data GEO bulk
158 vtc2-1 -0.61 >More info -0.32 >More info Col-0 whole plant Original data GEO bulk
159 rli 0.60 >More info 0.33 >More info WT whole plant Original data GEO bulk
160 Laer pretreat GA Flg22 1h 0.22 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
161 Leafminer locally damaged thaliana seedlings 0.66 >More info 0.26 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
162 Ws 100mM NaCl 0.54 >More info 0.38 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
163 seedlings protease IV 0.55 >More info 0.37 >More info seedlings nontreated control whole seedling Original data
164 Ws leaf 100mM NaCl 0.54 >More info 0.38 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
165 til1-1 22C 0.56 >More info 0.36 >More info Col-0 22C Original data GEO bulk
166 WT (Col-0) inflorescence drought day 4 0.56 >More info 0.36 >More info WT (Col-0) inflorescence well-watered day 4 Unopen flower buds Original data GEO bulk
167 WT AntimycinA 3h 0.59 >More info 0.33 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
168 ataf1-1 mutant Col-0 Bgh inoculated 0.66 >More info 0.25 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
169 toc1-1-73hr 0.40 >More info 0.51 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
170 coi1-2 0.61 >More info 0.30 >More info Col-0 mock Whole seedling Original data GEO bulk
171 ga1-3 SCL3OE -0.51 >More info -0.39 >More info ga1-3 whole root Original data
172 erf5 erf6 -0.35 >More info -0.55 >More info WT+water water seedlings Original data GEO bulk
173 3x(m) 0.39 >More info 0.51 >More info 2x two week old seedlings Original data
174 opr3 JA 0.5 h 0.33 >More info 0.56 >More info opr3 0 h Original data GEO bulk
175 CeO2 germinant -0.36 >More info -0.53 >More info Millipore Water germinant CeO2 seedling Original data
176 arr10 arr12 -0.59 >More info -0.30 >More info DMSO--WT DMSO roots Original data GEO bulk
177 P.syringae vir 4 h (leaf) 0.59 >More info 0.30 >More info Mock 4 h (leaf) Original data Elicitor treatments
178 rdr6-15 -0.58 >More info -0.31 >More info Col-0 Original data GEO bulk
179 Bur-0-1h IAA 0.57 >More info 0.32 >More info Bur-0h IAA whole plant Original data GEO bulk
180 ein2-1 9 hpi A. brassicicola 0.55 >More info 0.33 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
181 afb3-1 2h KNO3 0.34 >More info 0.54 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
182 anac017-2 AntimycinA 3h -0.60 >More info -0.28 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
183 Col-0-3h IAA 0.63 >More info 0.25 >More info Col-0-0h IAA whole plant Original data GEO bulk
184 WT resupplied Pi 4h 0.62 >More info 0.26 >More info WT complete seedlings Original data
185 ppi2 0.50 >More info 0.38 >More info WT whole plant Original data GEO bulk
186 Infected pft1 leaf 0.37 >More info 0.51 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
187 Col BTH 0.21 >More info 0.67 >More info Col rosettes Original data GEO bulk
188 CMP 4hr 0.61 >More info 0.26 >More info Acetone 4hr root Original data GEO bulk
189 LTN008-2 aza-dc 0.70 >More info 0.17 >More info LTN012-2 Mock Original data
190 GRX-overexpression seedlings MV -0.37 >More info -0.50 >More info WT seedlings MV Seedlings Original data GEO bulk
191 WT seedlings MV 0.53 >More info 0.33 >More info WT seedlings control Seedlings Original data GEO bulk
192 M6PR transgenic 0mM NaCl 0.56 >More info 0.30 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
193 pepr1-1 Pepr2-3 +Pep2 2h -0.52 >More info -0.34 >More info WT +Pep2 2h Pep2 Original data GEO bulk
194 Cold Stress 24 h (root) 0.53 >More info 0.33 >More info Stress mock 24 h (root) Original data Stress treatments
195 Leaf systemic 0.51 >More info 0.35 >More info Leaf control vegetative leaf Original data GEO bulk
196 WUSp cells 0.50 >More info 0.36 >More info Protoplast Induced Original data GEO bulk
197 cpctry 0.23 >More info 0.63 >More info Col Original data GEO bulk
198 cdpk6-yfp 0.51 >More info 0.34 >More info Kan seedlings Original data GEO bulk
199 irradiated leaf (cmt 5d) 0.63 >More info 0.22 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
200 hst5 0.67 >More info 0.17 >More info Col-0 Original data GEO bulk
201 oligomycin 4 h 0.55 >More info 0.29 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
202 hai1-2 low water potential 0.55 >More info 0.29 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
203 anti-sense for AtAOX1a 0.53 >More info 0.31 >More info WT Original data GEO bulk
204 Col-0 Root 100 mM ATP 30 min 0.58 >More info 0.26 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
205 Col-0-1h IAA 0.61 >More info 0.23 >More info Col-0-0h IAA whole plant Original data GEO bulk
206 M6PR transgenic leaf 100mM NaCl -0.60 >More info -0.24 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
207 6h +Pi -0.58 >More info -0.26 >More info 6h -Pi root Original data GEO bulk
208 Leafminer systemically damaged thaliana seedlings 0.53 >More info 0.30 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
209 Col in Pi deficiency medium 0.33 >More info 0.50 >More info Col in control medium root Original data GEO bulk
210 Col-0 under 4 days salt 0.62 >More info 0.21 >More info Col-0 under control 4 days salt treatment rosette Original data
211 WT Root-Pi 0.59 >More info 0.24 >More info WT Root+Pi roots Original data GEO bulk
212 Col-0 35S:MBS1 HL 3h -0.51 >More info -0.31 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
213 atr mock 0.54 >More info 0.28 >More info WT mock shoot apical meristem Original data
214 Red/FR Light45min 0.14 >More info 0.68 >More info FarRed Light 45min Original data Light treatments
215 ex1 flu dark 8hours/30 minute light 0.27 >More info 0.55 >More info col dark 8hours/30 minute light Original data GEO bulk
216 HRE1-RNAi20 hypoxia 6 hrs 0.27 >More info 0.55 >More info Col upon hypoxia 6 hrs hypoxia seedling roots Original data GEO bulk
217 Wounding Stress3 h (shoot) 0.50 >More info 0.31 >More info Stress mock 3 h (shoot) Original data Stress treatments
218 bak1-3 +Pep2 10h 0.57 >More info 0.24 >More info WT +Pep2 10h Pep2 Original data GEO bulk
219 rosette leaves fdh 0.67 >More info 0.13 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
220 2hr continuous KNO3 PrR cell 0.68 >More info 0.12 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
221 Differentiation 12h -0.51 >More info -0.29 >More info Differentiation 0h leaves Original data
222 WT Col-0 Bgh inoculated 0.59 >More info 0.21 >More info WT Col-0 Un-inoculated Original data GEO bulk
223 IAA7mII over-expressor IAA Treated 0.11 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
224 gai MeJA 1h -0.64 >More info -0.15 >More info Laer MeJA 1h leaf discs Original data GEO bulk
225 Col light-dark EtOH 0.51 >More info 0.28 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
226 myb3 myb3r4d 0.53 >More info 0.26 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
227 HSP90 Reduced RNAi-A2 0.50 >More info 0.29 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
228 ABA control 0.20 >More info 0.59 >More info No ABA control Original data GEO bulk
229 pmr5 0.51 >More info 0.27 >More info Col-0 Original data GEO bulk
230 hira-protoplast 0.63 >More info 0.14 >More info WT-protoplast protoplast Original data
231 CMV-WT 0.58 >More info 0.19 >More info Mock-At Aerial tissues Original data GEO bulk
232 dcl2-1 -0.63 >More info -0.14 >More info Col-0 Original data GEO bulk
233 GR:KAN1 DEX WL 0.53 >More info 0.24 >More info GR:KAN1 Mock WL seedlings Original data
234 vtc1 (II) 0.59 >More info 0.18 >More info Col (II) rosette Original data GEO bulk
235 Te ozone 0.54 >More info 0.23 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
236 whole roots -Fe 6 hour 0.27 >More info 0.50 >More info whole roots standard Original data GEO bulk
237 pmr5 pmr6 0.54 >More info 0.22 >More info Col-0 Original data GEO bulk
238 lug3 flowers 0.55 >More info 0.21 >More info WT-flowers flowers Original data GEO bulk
239 Apex octa 18DAS -0.53 >More info -0.23 >More info Apex Col 14DAS Original data GEO bulk
240 siliques AtHb1 control 0.24 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
241 cys-c1 root -0.52 >More info -0.23 >More info Root-WT roots Original data GEO bulk
242 D2O 0.51 >More info 0.24 >More info H2O seedling Original data GEO bulk
243 Whole root - low pH 48H -0.10 >More info -0.65 >More info Whole root - Std pH 48H pH 4.6 for 48 hr Original data GEO bulk
244 rsa3-1 Na 24h 0.59 >More info 0.15 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
245 WT 2-4h Xanthomonas 0.57 >More info 0.17 >More info WT T0 Original data GEO bulk
246 coi1-16 ein2 sid2 ozone 0.54 >More info 0.20 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
247 rosette leaves lcr 0.58 >More info 0.16 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
248 arf2 brz -0.52 >More info -0.22 >More info arf2 mock Original data GEO bulk
249 Nicotinamide-57hr 0.56 >More info 0.18 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
250 stn7-1 -0.73 >More info 0.00 >More info Col-0 rosette leaves Original data GEO bulk
251 Mutant siz1-3 (Drought) 0.61 >More info 0.12 >More info Col-0 (Drought) Original data GEO bulk
252 ckh1 CK200 0.59 >More info 0.14 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
253 Elevated CO2 AMPLE N DAY 0.55 >More info 0.18 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
254 siz1-3 drought 0.61 >More info 0.12 >More info Col-0 drought Original data GEO bulk
255 rdr2-1 -0.61 >More info -0.11 >More info Col-0 Original data GEO bulk
256 35S:RPS4 eds1-2 24h -0.57 >More info -0.15 >More info 35S:RPS4 24h leaves Original data
257 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.51 >More info 0.21 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
258 irradiated leaf (WT 5d) 0.60 >More info 0.12 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
259 epiF3 -0.61 >More info -0.11 >More info WT Col-0 aerial part Original data
260 A. lyrata -0.59 >More info -0.13 >More info A. thaliana mature leaves before flowering Original data GEO bulk
261 pap1-D 0.54 >More info 0.17 >More info Col-0 aerial part Original data
262 Apex mir-3TCP 14DAS -0.56 >More info -0.15 >More info Apex Col 14DAS Original data GEO bulk
263 lug3 leaves 0.60 >More info 0.11 >More info WT-leaves matured rosette leaves Original data GEO bulk
264 TaFLS overexpression line (OE2) -0.51 >More info -0.20 >More info Col-0 Rosette leaves Original data
265 Mutant gh3.5-1D (AvrRpt2) 0.64 >More info 0.07 >More info Col-0 (AvrRpt2) Original data GEO bulk
266 ACN1-2 -0.14 >More info -0.56 >More info col-7 Original data GEO bulk
267 Nicotinamide-65hr 0.57 >More info 0.13 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
268 Atwrky63 -0.52 >More info -0.17 >More info Col0 none leaf Original data GEO bulk
269 Mutant coi1(leaf) -0.52 >More info -0.17 >More info Col-0 (leaf) Original data GEO bulk
270 AtHB8 0.53 >More info 0.16 >More info Control for tissue data shoot apical meristem Original data GEO bulk
271 2hr continuous KCl and MSX control PeR cell 0.53 >More info 0.16 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
272 cat2-long-day 2d -0.51 >More info -0.18 >More info Col0-LD2 transferred to air (400 ppm) for 2 days in long day regime (16h light/8h dark) rosette leaf material Original data GEO bulk
273 myb50 xylem 0.57 >More info 0.12 >More info wt xylem xylem Original data GEO bulk
274 abi4-102 (II) 0.61 >More info 0.08 >More info Col (II) rosette Original data GEO bulk
275 gh3.5-1D 48 hpi 0.62 >More info 0.07 >More info Col-0 uninoculated Original data GEO bulk
276 atmospheric CO2 low Mg shoot 0.62 >More info 0.07 >More info atmospheric CO2 normal Mg shoot Shoot Original data
277 8hr-pH4.5 0.56 >More info 0.12 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
278 Nicotinamide-81hr 0.51 >More info 0.17 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
279 ceh1 mutant 0.55 >More info 0.13 >More info Parent line Original data
280 mutant acs4A (single mutant) -0.53 >More info -0.15 >More info col control (single mutant) Original data GEO bulk
281 shoot hypoxia pRBCS -0.17 >More info -0.51 >More info shoot hypoxia total Original data GEO bulk
282 Chemically 0.14 >More info 0.54 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
283 AsAKiin11 T2 -0.60 >More info -0.08 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
284 ahg1-1 0.18 >More info 0.50 >More info ABA control Original data GEO bulk
285 ice1 control 0.55 >More info 0.12 >More info WT control Original data GEO bulk
286 S17 0.50 >More info 0.17 >More info Control for tissue data shoot apical meristem Original data GEO bulk
287 ged1 seedlings -0.17 >More info -0.50 >More info Ws seedlings Original data GEO bulk
288 Ws seedlings 0.17 >More info 0.50 >More info ged1 seedlings Original data GEO bulk
289 vte2-1 3d vernalization 0.51 >More info 0.15 >More info WT 3d vernalization Original data GEO bulk
290 Cd 24h root -0.53 >More info -0.13 >More info WT-Untreated Shoot Original data GEO bulk
291 Shoot apex inflorescence (after bolting) 0.01 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
292 AsAKiin11 T1 -0.59 >More info -0.07 >More info C2 C2del and (As)AKiin11 control T1 one day post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
293 8-DAC chr11-1chr17-1 0.56 >More info 0.09 >More info 8-DAC Col-0 leaf explants Original data
294 CAX1/CAX3 mutant 0.55 >More info 0.10 >More info Col whole plant Original data GEO bulk
295 Cor hrpS 10h 0.55 >More info 0.10 >More info Mock 10h Cor hrpS Original data GEO bulk
296 WT Shoot-Pi 0.53 >More info 0.12 >More info WT Shoot+Pi shoots Original data GEO bulk
297 Elevated CO2 expanding leaf 0.56 >More info 0.09 >More info Ambient CO2 expanding leaf expanding leaf Original data
298 HMG 0.52 >More info 0.13 >More info Control for tissue data shoot apical meristem Original data GEO bulk
299 seed germinating in countinuous light 24h SL -0.02 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
300 msh1 albino 0.58 >More info 0.07 >More info WT aerial part Original data GEO bulk
301 AvrRpt2 Col-0 6hpi 0.57 >More info 0.07 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
302 HopZ1a treated 0.58 >More info 0.06 >More info col Original data GEO bulk
303 Laer pretreat GA+JA Flg22 0h 0.51 >More info 0.12 >More info Laer pretreat water control leaf discs Original data GEO bulk
304 KAN1 0.52 >More info 0.11 >More info Control for tissue data shoot apical meristem Original data GEO bulk
305 cs26 short-day -0.53 >More info -0.10 >More info Leaves-WT-SD leaf Original data GEO bulk
306 C2H2 ZF TDNA mutant -0.52 >More info -0.11 >More info Col-WT mature pollen Original data GEO bulk
307 GST 4 h (leaf) 0.65 >More info -0.02 >More info Mock 4 h (leaf) Original data Elicitor treatments
308 CLO 4mM 0.62 >More info 0.00 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
309 Infected Col-0 leaf -0.51 >More info -0.11 >More info Mock Col-0 leaf F. oxysporum leaf Original data GEO bulk
310 seedlings +5AC 0.53 >More info 0.09 >More info control seedlings 10-day old whole seedling Original data GEO bulk
311 Mature callus 0.54 >More info 0.08 >More info Young callus hypocotyls Original data GEO bulk
312 downy mildew cotyledons late stage 0.60 >More info 0.02 >More info mock inoculated Cotyledons Original data GEO bulk
313 P35S:rGRF3 0.57 >More info 0.05 >More info WS Original data GEO bulk
314 ACN1-2 Sucrose -0.10 >More info -0.52 >More info Col-7 Sucrose Original data GEO bulk
315 calcicole ecotype Cal-0 0.54 >More info 0.07 >More info Col-4 1 mM CaCl2 Original data GEO bulk
316 VND6 12h 0.51 >More info 0.10 >More info wt 12h Original data GEO bulk
317 wrky33 Bc inoculation 14h 0.51 >More info 0.10 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
318 LAS 0.51 >More info 0.10 >More info Control for tissue data shoot apical meristem Original data GEO bulk
319 Lipopolysaccaride4 h (leaf) 0.53 >More info 0.08 >More info Mock 4 h (leaf) Original data Elicitor treatments
320 root longitudinal zone-4 low sulfur 0.10 >More info 0.51 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
321 VND6 0h 0.53 >More info 0.07 >More info wt 0h Original data GEO bulk
322 Nicotinamide-89hr 0.53 >More info 0.07 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
323 Elevated CO2 AMPLE N NIGHT 0.51 >More info 0.09 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
324 HDG4 0.50 >More info 0.10 >More info Control for tissue data shoot apical meristem Original data GEO bulk
325 IMI 4mM 0.58 >More info 0.02 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
326 35SAvr -0.04 >More info -0.55 >More info Ecotype Col Original data GEO bulk
327 AsAKiin11 T3 -0.60 >More info 0.01 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
328 Col-0-avrB-6h 0.51 >More info 0.08 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
329 bri1-116 -0.14 >More info 0.73 >More info Col seedling Original data GEO bulk
330 CCA1-ox 6am non-polysomal 0.07 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
331 mdh 0.08 >More info 0.50 >More info Col Original data GEO bulk
332 HopZ1a treated ulp1c ulp1d 0.54 >More info 0.03 >More info col Original data GEO bulk
333 vte2 leaves 48h LT 0.51 >More info 0.06 >More info Col leaves 48h LT 48h 9-11th adult leaves Original data
334 GiantCell Root -0.60 >More info 0.03 >More info Control Root laser captured giant cells Original data GEO bulk
335 IRP1-OE-Fe--shoot 0.61 >More info -0.04 >More info COL-0-Fe--shoot shoot Original data
336 light-hs -0.58 >More info 0.01 >More info light-control seedling Original data
337 Shoot P recovery 0.61 >More info -0.07 >More info Shoot -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
338 HairpinZ 4 h (leaf) 0.57 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
339 Mature roots 0.50 >More info 0.03 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
340 sni1 0.55 >More info -0.02 >More info WT Original data GEO bulk
341 seedling 3h after HZE WT 0.51 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
342 SA 4mM 0.63 >More info -0.10 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
343 irradiated leaf (WT 1d) 0.57 >More info -0.04 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
344 Full C2 T3 -0.54 >More info 0.02 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
345 col-5 hrpA 12h 0.50 >More info -0.00 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
346 root longitudinal zone-3 pH 4.6 -0.51 >More info 0.01 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
347 xyl-grown cell culture- 1h 1mM Fru -0.09 >More info 0.59 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
348 spx1 spx2 resupplied Pi 4h -0.71 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
349 xyl-grown cell culture- 1h 1mM Suc 0.09 >More info -0.55 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
350 penta MeJA 1h 0.63 >More info -0.17 >More info Laer MeJA 1h leaf discs Original data GEO bulk
351 shoot hypoxia p35S 0.06 >More info -0.50 >More info shoot hypoxia total Original data GEO bulk
352 psae1-3 stn7-1 0.53 >More info -0.13 >More info WS rosette leaves Original data GEO bulk
353 WT NAA 1h 0.53 >More info -0.15 >More info WT 0h Leaf tissue Original data GEO bulk
354 +1.6 mM Tween 20 1 h. 0.50 >More info -0.22 >More info +distilled water 1 h. Original data GEO bulk