4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on Mature callus
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "Mature callus"  Help Download transcriptome of top 30
Score Experiment Correlation from
Mature callus		 Correlation to
Mature callus		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Mature callus 1.00 >More info 1.00 >More info Young callus hypocotyls Original data GEO bulk
2 ice1 control 0.70 >More info 0.80 >More info WT control Original data GEO bulk
3 Shoot -Cs 0.62 >More info 0.86 >More info Control-shoot Original data GEO bulk
4 CMP 24hr 0.73 >More info 0.74 >More info Acetone 24hr root Original data GEO bulk
5 Fenclorim 4hr 0.70 >More info 0.73 >More info Acetone 4hr root Original data GEO bulk
6 DC3000 24h 0.68 >More info 0.73 >More info Mock 24h DC3000 Original data GEO bulk
7 35S-MIF1 dark grown 0.78 >More info 0.62 >More info Dark-grown WT control Original data GEO bulk
8 IRP1-OE-Fe--shoot 0.67 >More info 0.72 >More info COL-0-Fe--shoot shoot Original data
9 ice1 6H Cold 0.69 >More info 0.70 >More info WT 6H Cold Original data GEO bulk
10 B.cinerea 18 h infection 0.69 >More info 0.70 >More info Mock 18 h Original data Botrytis cinerea infection
11 Botrytis cinerea 18h 0.69 >More info 0.70 >More info control 18h Original data GEO bulk
12 upf3 0.70 >More info 0.68 >More info WT whole plant Original data GEO bulk
13 Fenclorim 24hr 0.69 >More info 0.68 >More info Acetone 24hr root Original data GEO bulk
14 gh3.5-1D 48 hpi 0.68 >More info 0.69 >More info Col-0 uninoculated Original data GEO bulk
15 del1-1 mutant 5d uninfected 0.67 >More info 0.69 >More info Col-0 5d uininfected mature fully expanded leaves Original data GEO bulk
16 Botrytis cinerea 48h 0.65 >More info 0.71 >More info control 48h Original data GEO bulk
17 smg7b-1 0.67 >More info 0.68 >More info WT whole plant Original data GEO bulk
18 hrpA 7h 0.64 >More info 0.71 >More info Mock 7h hrpA Original data GEO bulk
19 SLWF infested 0.69 >More info 0.66 >More info SLWF uninfested rosette tissue Original data GEO bulk
20 cop1 Seedling BL 0.67 >More info 0.67 >More info WT Seedling BL Original data GEO bulk
21 IMI 4mM 0.68 >More info 0.66 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
22 Col whole leaf 5dpi 0.65 >More info 0.68 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
23 Sulfometuron EC50 0.72 >More info 0.61 >More info Carrier Original data GEO bulk
24 pmr5 pmr6 0.64 >More info 0.68 >More info Col-0 Original data GEO bulk
25 pvip1 pvip2 0.67 >More info 0.65 >More info Col-0 whole rosettes Original data GEO bulk
26 35S:RPS4 eds1-2 24h -0.63 >More info -0.68 >More info 35S:RPS4 24h leaves Original data
27 ceh1 mutant 0.65 >More info 0.66 >More info Parent line Original data
28 Cor 10h 0.61 >More info 0.70 >More info Mock 10h Cor Original data GEO bulk
29 PAHs stress 0.66 >More info 0.65 >More info exp control phenanthrene whole plants Original data GEO bulk
30 edr1 18 h powdery mildew 0.64 >More info 0.67 >More info Col-0 18 h powdery mildew Original data GEO bulk
31 ice1 3H Cold 0.66 >More info 0.64 >More info WT 3H Cold Original data GEO bulk
32 msh1 albino 0.64 >More info 0.66 >More info WT aerial part Original data GEO bulk
33 ice1 24H Cold 0.63 >More info 0.67 >More info WT 24H Cold Original data GEO bulk
34 Col ozone 2d 0.63 >More info 0.67 >More info Col clean-air 2d ozone Original data GEO bulk
35 RRE2 Chitin 0.72 >More info 0.58 >More info Chitin Original data GEO bulk
36 col-5 hrpA 12h 0.57 >More info 0.73 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
37 ataf1-1 mutant Col-0 Bgh inoculated 0.61 >More info 0.69 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
38 WT 1wk -P 0.63 >More info 0.66 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
39 Col whole leaf 7dpi 0.61 >More info 0.68 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
40 Mutant gh3.5-1D (AvrRpt2) 0.61 >More info 0.68 >More info Col-0 (AvrRpt2) Original data GEO bulk
41 pmr5 0.59 >More info 0.70 >More info Col-0 Original data GEO bulk
42 WT powdery mildew 0.64 >More info 0.64 >More info WT control inoculation with the powdery mildew pathogen Original data GEO bulk
43 ASL9-ox -0.68 >More info -0.60 >More info WT aerial parts of seedlings Original data GEO bulk
44 cpr5 0.59 >More info 0.69 >More info WT(COL) Original data GEO bulk
45 hrcC 0.59 >More info 0.69 >More info MgCl2 5x10^7 cfu/ml DC3000 hrcC mutant Original data GEO bulk
46 HopZ1a treated 0.59 >More info 0.69 >More info col Original data GEO bulk
47 npr1-1 SA -0.65 >More info -0.62 >More info Col-0 SA complete seedling Original data
48 Mutant iaa17-6 0.67 >More info 0.60 >More info Col Original data GEO bulk
49 cpr5scv1 0.61 >More info 0.66 >More info WT(COL) Original data GEO bulk
50 anac017-2 AntimycinA 3h -0.56 >More info -0.71 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
51 cop1 Seedling BL+ABA 0.64 >More info 0.63 >More info WT Seedling BL+ABA Original data GEO bulk
52 WT-SA 0.63 >More info 0.64 >More info WT-mock spray 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
53 RPL18 TuMV inoculated polysomal RNA 0.59 >More info 0.67 >More info mock inoculated polysomal RNA PO Original data GEO bulk
54 ein2-1 9 hpi A. brassicicola 0.61 >More info 0.65 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
55 smg5-2 0.64 >More info 0.62 >More info WT whole plant Original data GEO bulk
56 cpr5npr1 0.58 >More info 0.68 >More info WT(COL) Original data GEO bulk
57 aox1a(line) MLD stressed 0.66 >More info 0.60 >More info WT(Col0) MLD stressed (control aox1a) leaf Original data
58 WT AntimycinA 3h 0.61 >More info 0.65 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
59 CMV-WT 0.58 >More info 0.67 >More info Mock-At Aerial tissues Original data GEO bulk
60 eds16 whole leaf 5dpi -0.62 >More info -0.63 >More info Col whole leaf 5dpi whole leaf Original data GEO bulk
61 HopZ1a treated ulp1c ulp1d 0.60 >More info 0.65 >More info col Original data GEO bulk
62 OH1 0.61 >More info 0.64 >More info Col-0 leaves Original data GEO bulk
63 Col0-PsmES4326-24hpi 0.64 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
64 WT Col-0 Bgh inoculated 0.58 >More info 0.67 >More info WT Col-0 Un-inoculated Original data GEO bulk
65 Col-Luc WT 3h antimycin A 0.62 >More info 0.63 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
66 flu 0.57 >More info 0.67 >More info WT Col Original data GEO bulk
67 bak1-3 +Pep2 10h 0.63 >More info 0.61 >More info WT +Pep2 10h Pep2 Original data GEO bulk
68 Col-0 9 hpi A. brassicicola 0.58 >More info 0.66 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
69 hrpA fliC 7h 0.62 >More info 0.62 >More info Mock 7h hrpA fliC Original data GEO bulk
70 Leafminer locally damaged thaliana seedlings 0.62 >More info 0.61 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
71 pho1 0.61 >More info 0.62 >More info Col2WT Original data GEO bulk
72 rpoTmp(line) MLD stressed 0.65 >More info 0.58 >More info WT(Col0) MLD stressed (control rpoTmp) leaf Original data
73 RPL18 TuMV inoculated total RNA 0.58 >More info 0.65 >More info mock inoculated total RNA PO Original data GEO bulk
74 penta Alternaria 3dpi 0.70 >More info 0.53 >More info Laer Alternaria 3dpi leaf discs Original data GEO bulk
75 upf1 0.66 >More info 0.56 >More info WT whole plant Original data GEO bulk
76 AgNO3 3 h 0.55 >More info 0.67 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
77 Elevated CO2 fully expanded leaf 0.65 >More info 0.57 >More info Ambient CO2 fully expanded leaf fully expanded leaf Original data
78 sni1 0.57 >More info 0.65 >More info WT Original data GEO bulk
79 Pst-DC3000(avrRpm1)-4hpi 0.62 >More info 0.59 >More info Pst-DC3000-4hpi Original data GEO bulk
80 albino Ds13-2198-1 -0.63 >More info -0.58 >More info control Original data GEO bulk
81 apk1 apk2 0.61 >More info 0.60 >More info Col0-control whole rosette Original data GEO bulk
82 WT-NOCO2 INFECTED 0.52 >More info 0.68 >More info WT-MOCK Original data GEO bulk
83 SA 4mM 0.68 >More info 0.52 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
84 flu over-tAPX 0.56 >More info 0.64 >More info WT Col Original data GEO bulk
85 PBZ 0.58 >More info 0.62 >More info none PBZ Rosette Original data GEO bulk
86 pnp1-1 1wk +P 0.59 >More info 0.61 >More info WT 1wk +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
87 Shoot -K 0.63 >More info 0.57 >More info Control-shoot Original data GEO bulk
88 K starvation (shoot) 0.63 >More info 0.57 >More info Ws (shoot) Original data GEO bulk
89 E.coli TUV86 2 fliC 7h 0.56 >More info 0.63 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
90 S58-2 0.59 >More info 0.60 >More info wt Original data GEO bulk
91 cpr5npr1svi1 0.50 >More info 0.69 >More info WT(COL) Original data GEO bulk
92 efr-1 +elf18 10h -0.53 >More info -0.66 >More info WT +elf18 10h elf18 Original data GEO bulk
93 atmyc2 cop1 Seedling BL 0.57 >More info 0.62 >More info WT Seedling BL Original data GEO bulk
94 Seedling KUA1-IOX est 0.42 >More info 0.77 >More info Seedling KUA1-IOX mock Original data
95 Elevated CO2 AMPLE N NIGHT 0.53 >More info 0.65 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
96 Leafminer damaged seedlings 0.62 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
97 S15-118 0.52 >More info 0.66 >More info wt Original data GEO bulk
98 coi1-16 ein2 sid2 ctrl -0.60 >More info -0.58 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
99 RRE1 Chitin 0.70 >More info 0.47 >More info Chitin Original data GEO bulk
100 Mutant siz1-3 0.56 >More info 0.61 >More info Col-0 Original data GEO bulk
101 Cor 24h 0.53 >More info 0.64 >More info Mock 24h Cor Original data GEO bulk
102 siz1-3 control 0.56 >More info 0.61 >More info Col-0 control Original data GEO bulk
103 DFPM 0.60 >More info 0.57 >More info control Original data GEO bulk
104 col-5 DC3000 12h 0.52 >More info 0.65 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
105 Imidazolinone EC50 0.63 >More info 0.53 >More info Carrier (Imidazolinone) Original data GEO bulk
106 GST NPP1 4 h (leaf) 0.56 >More info 0.60 >More info Mock 4 h (leaf) Original data Elicitor treatments
107 LTN008-2 aza-dc 0.62 >More info 0.54 >More info LTN012-2 Mock Original data
108 bZIP1ko mutant N+Light- 0.50 >More info 0.66 >More info WT-sib N+Light- whole plant Original data GEO bulk
109 Col whole leaf 3dpi 0.52 >More info 0.64 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
110 Col-0 48 hpi 0.58 >More info 0.57 >More info Col-0 uninoculated Original data GEO bulk
111 Col-0 ozone 0.60 >More info 0.55 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
112 Te ozone 0.58 >More info 0.57 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
113 Glyphosate EC50 0.66 >More info 0.49 >More info Carrier (Glyphosate) Original data GEO bulk
114 Laer treat paclobutrazol (PAC) 0.56 >More info 0.59 >More info Laer Control leaf discs Original data GEO bulk
115 anac017-2 H2O2 3h -0.65 >More info -0.50 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
116 35S:RPS4 eds1-2 8h -0.56 >More info -0.59 >More info 35S:RPS4 8h leaves Original data
117 AvrRpt2 Col-0 6hpi 0.54 >More info 0.60 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
118 Col-0 under 4 days salt 0.62 >More info 0.52 >More info Col-0 under control 4 days salt treatment rosette Original data
119 Mutant nph4-1_arf19-1 0.63 >More info 0.51 >More info Col Original data GEO bulk
120 anac017-1 H2O2 3h -0.58 >More info -0.56 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
121 MPK6 ox Shoot Hypoxia 0.63 >More info 0.51 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
122 Mutant nph4-1 0.59 >More info 0.55 >More info Col Original data GEO bulk
123 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.60 >More info 0.53 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
124 20d after anthesis 0.61 >More info 0.52 >More info 10d after anthesis senescing pod tissues of 20 days after anthesis Original data GEO bulk
125 WT +elf18 10h 0.55 >More info 0.58 >More info WT untreated elf18 Original data GEO bulk
126 CMP 4hr 0.57 >More info 0.56 >More info Acetone 4hr root Original data GEO bulk
127 UV 0.64 >More info 0.49 >More info WT aerial region Original data GEO bulk
128 Mutant sav3-2 (SH) 0.44 >More info 0.69 >More info Col-0 (SH) Original data GEO bulk
129 sav3-2 shade 0.44 >More info 0.69 >More info Col-0 shade seedlings Original data GEO bulk
130 WT Bc inoculation 14h 0.59 >More info 0.53 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
131 Elevated CO2 AMPLE N DAY 0.51 >More info 0.61 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
132 camta1/2/3 warm 0.54 >More info 0.58 >More info WT warm entire aerial part Original data GEO bulk
133 Cor hrpS 10h 0.60 >More info 0.52 >More info Mock 10h Cor hrpS Original data GEO bulk
134 lht1 PstDC3000 48h 0.62 >More info 0.50 >More info PstDC3000 48h 48hr leaf Original data GEO bulk
135 Col whole leaf amplified 5 dpi 0.55 >More info 0.57 >More info Col whole leaf amplified 5d UI whole leaf Original data GEO bulk
136 rosette Dark Wounded 0.45 >More info 0.67 >More info rosette Dark Control Original data GEO bulk
137 Col BTH 0.45 >More info 0.67 >More info Col rosettes Original data GEO bulk
138 CLO 4mM 0.63 >More info 0.48 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
139 E.coli 0157 H7 7h 0.53 >More info 0.58 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
140 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.57 >More info 0.54 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
141 safener treated 0.58 >More info 0.53 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
142 DC3000 2 h (leaf) 0.48 >More info 0.63 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
143 Primisulfuron EC50 0.58 >More info 0.52 >More info Carrier (primisulfuron) Original data GEO bulk
144 pepr1-1 Pepr2-3 +Pep2 2h -0.50 >More info -0.60 >More info WT +Pep2 2h Pep2 Original data GEO bulk
145 35S::ERF104 Flg22 4h 0.50 >More info 0.60 >More info 35S::ERF104 H2O 4h Original data GEO bulk
146 mkk1/mkk2 control rep 0.56 >More info 0.54 >More info Col-0 Time 0 rep Original data GEO bulk
147 IRP1-OE-Ctrl--shoot 0.57 >More info 0.53 >More info COL-0-Ctrl--shoot shoot Original data
148 eds16 whole leaf 6hpi -0.47 >More info -0.63 >More info Col whole leaf 6hpi whole leaf Original data GEO bulk
149 Pto inoculated 0.55 >More info 0.54 >More info col Original data GEO bulk
150 JA 0.53 >More info 0.56 >More info Col-0 mock Whole seedling Original data GEO bulk
151 sid2-1 cold -0.49 >More info -0.60 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
152 ERF96OE 0.47 >More info 0.62 >More info WT leaf Original data
153 Osmotic Stress 24 h (shoot) 0.60 >More info 0.48 >More info Stress mock 24 h (shoot) Original data Stress treatments
154 Mutant siz1-3 (Drought) 0.54 >More info 0.54 >More info Col-0 (Drought) Original data GEO bulk
155 col-5 DC3000-avrRpm 4h 0.53 >More info 0.55 >More info col-5 MgCl2 4h Whole leaf Original data GEO bulk
156 lht1 untreated 0.53 >More info 0.55 >More info WT untreated untreated leaf Original data GEO bulk
157 siz1-3 drought 0.54 >More info 0.54 >More info Col-0 drought Original data GEO bulk
158 csn5 (csn5a-2 csn5b) light 0.61 >More info 0.47 >More info WT light Original data GEO bulk
159 mkk1/mkk2 24h BTH rep 0.57 >More info 0.51 >More info Col-0 24h BTH rep Original data GEO bulk
160 Phaseolicola 2 h (leaf) 0.42 >More info 0.66 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
161 Flagellin 4 h (leaf) 0.48 >More info 0.60 >More info Mock 4 h (leaf) Original data Elicitor treatments
162 Laer pretreat GA Flg22 1h 0.37 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
163 aerial organ callus inducing medium 96 h 0.46 >More info 0.62 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
164 Col ozone 3h 0.41 >More info 0.67 >More info Col clean-air 3h ozone Original data GEO bulk
165 des1 water 0.63 >More info 0.44 >More info WT water water leaf Original data GEO bulk
166 cpr5 0.52 >More info 0.55 >More info WT seedling Original data GEO bulk
167 mpk6-ko Flg22 4h 0.46 >More info 0.61 >More info mpk6-ko H2O 4h Original data GEO bulk
168 vte2-1 3d vernalization 0.43 >More info 0.64 >More info WT 3d vernalization Original data GEO bulk
169 wrky33 Bc inoculation 14h 0.59 >More info 0.48 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
170 Red Light 45min -0.36 >More info -0.71 >More info White Light 45min Original data Light treatments
171 WT H2O2 3h 0.55 >More info 0.51 >More info WT water 3h 3h_H2O2 Original data GEO bulk
172 pmr4-1 control 0.55 >More info 0.51 >More info WT control uninoculated Original data GEO bulk
173 Col whole leaf 5 dpi 0.48 >More info 0.58 >More info Col whole leaf 5d UI whole leaf Original data GEO bulk
174 DC3000 7h 0.45 >More info 0.61 >More info Mock 7h DC3000 Original data GEO bulk
175 8hr-pH4.5 0.50 >More info 0.55 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
176 CT101 ozone 0.55 >More info 0.50 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
177 pnp1-1 3h +P 0.56 >More info 0.49 >More info WT 3h +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
178 Col-O high light 0.55 >More info 0.50 >More info Col-O bule light Original data GEO bulk
179 4d red light grown hmr-5 seedlings 0.61 >More info 0.44 >More info 4d red light grown WT(Col-0) seedlings Original data
180 JMJ24 knockout 0.49 >More info 0.56 >More info WT Original data GEO bulk
181 R. solani AG2-1 0.57 >More info 0.48 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
182 Col leaves 48h LT 0.53 >More info 0.51 >More info Col leaves 0h LT 48h 9-11th adult leaves Original data
183 A. thaliana-A. lyrata hybrid -0.54 >More info -0.50 >More info A. thaliana mature leaves before flowering Original data GEO bulk
184 coi1-16 ein2 sid2 ozone 0.59 >More info 0.45 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
185 UV Stress 24 h (shoot) 0.41 >More info 0.63 >More info Stress mock 24 h (shoot) Original data Stress treatments
186 oas-a1.1 Cd 18h 0.42 >More info 0.62 >More info Cd 18h root Root Original data GEO bulk
187 gpa1 +ABA GC -0.40 >More info -0.64 >More info Col-0 +ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
188 CAX1/CAX3 mutant 0.49 >More info 0.55 >More info Col whole plant Original data GEO bulk
189 del1-1 5dpi 0.52 >More info 0.51 >More info Col-0 5dpi mature fully expanded leaves Original data GEO bulk
190 Mutant axr3-1 0.62 >More info 0.41 >More info Col Original data GEO bulk
191 Triazolopyrimidine EC50 0.57 >More info 0.46 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
192 8h-DC3000 avrRpm1 0.58 >More info 0.45 >More info 8h-DC3000 leaves Original data GEO bulk
193 arf2 brz -0.48 >More info -0.55 >More info arf2 mock Original data GEO bulk
194 Col-0 DCA 48h 0.44 >More info 0.59 >More info Col-0 MOCK 48h Original data GEO bulk
195 sid2 -0.47 >More info -0.56 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
196 rsa3-1 Na 24h 0.40 >More info 0.63 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
197 aba3-1 0.44 >More info 0.59 >More info wt Original data GEO bulk
198 WT 1mM phosphate 8 hours. -0.49 >More info -0.54 >More info WT control (not supplemented). Original data
199 pad4-PsmES4326-24hpi -0.51 >More info -0.51 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
200 35S-MIF1 light grown 0.69 >More info 0.33 >More info Light-grown WT control Original data GEO bulk
201 Laer Flg22 2h 0.51 >More info 0.51 >More info Laer Control leaf discs Original data GEO bulk
202 expressing C2 MeJA -0.45 >More info -0.57 >More info LUC2T Original data GEO bulk
203 atgsnor1-1 -0.48 >More info -0.54 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
204 WT 2-4h Xanthomonas 0.48 >More info 0.54 >More info WT T0 Original data GEO bulk
205 csn3-1 light 0.57 >More info 0.44 >More info WT light Original data GEO bulk
206 GO5; 0h switch to ambient CO2 concentrations; -0.50 >More info -0.51 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
207 low water potential 0.63 >More info 0.38 >More info control Col-0 -1.2 MPa whole seedlings Original data GEO bulk
208 GST 4 h (leaf) 0.39 >More info 0.62 >More info Mock 4 h (leaf) Original data Elicitor treatments
209 Mutant coi1(leaf) -0.47 >More info -0.54 >More info Col-0 (leaf) Original data GEO bulk
210 erf104-ko Flg22 4h 0.41 >More info 0.60 >More info erf104-ko H2O 4h Original data GEO bulk
211 Tsu -Fe 48h Shoots 0.48 >More info 0.53 >More info Tsu +Fe 24h Shoots Original data GEO bulk
212 Elevated CO2 leaf primordia 0.40 >More info 0.61 >More info Ambient CO2 leaf primordia leaf primordia Original data
213 Mutant nph4-1_arf19-1 (IAA) 0.55 >More info 0.45 >More info Col (IAA) Original data GEO bulk
214 atgsnor1-1-avrB-6h 0.50 >More info 0.50 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
215 FarRed Light 4 h 0.39 >More info 0.61 >More info White Light 4 h Original data Light treatments
216 AvrRpm1 2 h (leaf) 0.38 >More info 0.62 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
217 Bay-0-1h IAA -0.44 >More info -0.56 >More info Bay-0-0h IAA whole plant Original data GEO bulk
218 downy mildew cotyledons late stage 0.46 >More info 0.54 >More info mock inoculated Cotyledons Original data GEO bulk
219 vtc2 (I) 0.45 >More info 0.55 >More info Col (I) rosette Original data GEO bulk
220 edr1 36 h powdery mildew 0.46 >More info 0.54 >More info Col-0 36 h powdery mildew Original data GEO bulk
221 wavy 0.41 >More info 0.59 >More info WT Original data GEO bulk
222 col-5 hrpA 2h 0.49 >More info 0.51 >More info col-5 MgCl2 2h Whole leaf Original data GEO bulk
223 mil4 BTH 0.51 >More info 0.48 >More info Col BTH rosettes Original data GEO bulk
224 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.57 >More info -0.42 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
225 tor mutant glucose 0.51 >More info 0.48 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
226 Col-0 INA 48h 0.41 >More info 0.58 >More info Col-0 MOCK 48h Original data GEO bulk
227 WT in -N 0.47 >More info 0.52 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
228 seedlings-week-old RECA1-overexpressing
transgenic		 0.46 >More info 0.53 >More info seedlings-week-old Col-0 seedlings Original data
229 Atwrky63 -0.58 >More info -0.40 >More info Col0 none leaf Original data GEO bulk
230 shoots bhlh100/101 0uM Fe 0.51 >More info 0.47 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
231 aphid infested 0.50 >More info 0.48 >More info control aphid infested Leaves Original data GEO bulk
232 P.syringae AvrRpt2 4 h (leaf) 0.50 >More info 0.48 >More info Mock 4 h (leaf) Original data Elicitor treatments
233 aphid infested 0.50 >More info 0.48 >More info CTR Original data GEO bulk
234 Chitosan 3h Treatment 0.53 >More info 0.45 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
235 vtc1 (II) 0.46 >More info 0.52 >More info Col (II) rosette Original data GEO bulk
236 siliques AtHb1 control 0.46 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
237 total mRNA eif3k 0.36 >More info 0.62 >More info total mRNA WT aerial part Original data GEO bulk
238 24h +Pi -0.52 >More info -0.45 >More info 24h -Pi root Original data GEO bulk
239 pnp1-1 3h -P 0.50 >More info 0.47 >More info WT 3h -P No phosphate medium seedlings without roots Original data GEO bulk
240 dor drought 0.42 >More info 0.55 >More info WT drought Original data GEO bulk
241 gpa1 -ABA GC -0.33 >More info -0.64 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
242 ulp1c ulp1d +Pto 0.43 >More info 0.54 >More info ulp1c ulp1d mock Original data GEO bulk
243 6h +Pi -0.43 >More info -0.54 >More info 6h -Pi root Original data GEO bulk
244 bio4-1 mutant leaves 0.33 >More info 0.64 >More info WT leaves leaves Original data GEO bulk
245 35S::PI ap3-3 35S::AP-GR +DEX 0.42 >More info 0.55 >More info 0hr DEX Original data GEO bulk
246 WT resupplied Pi 4h 0.54 >More info 0.42 >More info WT complete seedlings Original data
247 Mutant arf2-6 (IAA) -0.45 >More info -0.51 >More info Col (IAA) Original data GEO bulk
248 Col laser microdissected 5 dpi 0.38 >More info 0.58 >More info Col laser microdissected 5d UI LMD leaf epidermal and mesophyll cells Original data GEO bulk
249 nas4x leaves - Fe -0.37 >More info -0.59 >More info WT leaves - Fe Leaves Original data GEO bulk
250 camta1/3 warm 0.38 >More info 0.58 >More info WT warm entire aerial part Original data GEO bulk
251 GO5; 8h switch to ambient CO2 concentrations; 0.46 >More info 0.50 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
252 ABA DFPM 0.55 >More info 0.40 >More info control Original data GEO bulk
253 RRE2 0.56 >More info 0.39 >More info Col C Original data GEO bulk
254 Propiconazole 3 h 0.40 >More info 0.55 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
255 Col-0-avrB-6h 0.39 >More info 0.56 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
256 Col-0 low oxygen 0.41 >More info 0.54 >More info Col-0 Original data GEO bulk
257 abi4 vtc2 (I) 0.45 >More info 0.50 >More info Col (I) rosette Original data GEO bulk
258 rcf1-1 cold 12h 0.45 >More info 0.50 >More info WT cold 12 h cold at 4°C seedlings Original data GEO bulk
259 cov1 cov2 stem Base 0.55 >More info 0.39 >More info WT stem Base stem Base Original data GEO bulk
260 C24 ozone 0.52 >More info 0.42 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
261 seedlings by volatiles from leafminer damaged
Lima bean 48h		 0.51 >More info 0.43 >More info seedlings by volatiles from healthy Lima bean 48h leaves Original data GEO bulk
262 Col-0 Flg22 4h 0.35 >More info 0.59 >More info Col-0 H2O 4h Original data GEO bulk
263 miR393 flg22 2h 0.39 >More info 0.54 >More info WT 0h Leaf tissue Original data GEO bulk
264 gh3.5D uninoculated -0.38 >More info -0.55 >More info Col-0 48 hpi Original data GEO bulk
265 sav1-1 shade 0.39 >More info 0.54 >More info Col-0 shade seedlings Original data GEO bulk
266 Mutant sav3-2 (WL) 0.33 >More info 0.60 >More info Col-0 (WL) Original data GEO bulk
267 aerial organ callus inducing medium 48 h 0.41 >More info 0.52 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
268 sav3-2 light 0.33 >More info 0.60 >More info Col-0 light seedlings Original data GEO bulk
269 essp4/sdg8-5 mutant 0.53 >More info 0.39 >More info wild type leaf Original data GEO bulk
270 WT Shoot-Pi 0.56 >More info 0.36 >More info WT Shoot+Pi shoots Original data GEO bulk
271 SPT4-R3 seedlings0 DAS 0.51 >More info 0.41 >More info Col-0 seedlings0 DAS seedlings Original data
272 treated group 0.53 >More info 0.38 >More info Control group Original data
273 Dark 3day ivd 0.51 >More info 0.40 >More info 0h ivd Original data
274 FarRed Light 45min -0.24 >More info -0.67 >More info White Light 45min Original data Light treatments
275 Starch sheath 5 days MS incubation 0.38 >More info 0.53 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
276 PNO8 3 h 0.50 >More info 0.41 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
277 Light 0.5h polysome-bound 0.41 >More info 0.50 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
278 miR393 0h -0.28 >More info -0.62 >More info WT 0h Leaf tissue Original data GEO bulk
279 expressing C2 Mock -0.25 >More info -0.65 >More info LUC2C Original data GEO bulk
280 ckh1 CK200 0.37 >More info 0.53 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
281 gun1gun5 far-red pretreated -0.38 >More info -0.52 >More info WT far-red pretreated Original data GEO bulk
282 leaf13 0.38 >More info 0.52 >More info unwounded leaves none Original data GEO bulk
283 hira-root -0.28 >More info -0.62 >More info WT-root root Original data
284 SAB 0.32 >More info 0.58 >More info COL seedling Original data
285 CHS-silenced type -0.56 >More info -0.33 >More info anthocyanin-producing revertants total tissue Original data GEO bulk
286 Cambium 5 days NAA 0.34 >More info 0.55 >More info Stem tissue T0 Interfascicular cambium induced after 5 days NAA in vitro treatment laser capture microdissection Original data GEO bulk
287 bio4-1 mutant watered00µM biotin leaves -0.34 >More info -0.55 >More info bio4-1 mutant leaves leaves Original data GEO bulk
288 Mutant cry1 (High Light) -0.53 >More info -0.36 >More info Col-0 (High Light) Original data GEO bulk
289 plant (tga2-5-6) 4h OPDA 0.53 >More info 0.36 >More info plant (tga2-5-6) 4h control Original data GEO bulk
290 cry1 high light -0.53 >More info -0.36 >More info Col-O high light Original data GEO bulk
291 Oxidative Stress 3 h (root) -0.39 >More info -0.50 >More info Stress mock 3 h (root) Original data Stress treatments
292 edr1 0 h powdery mildew 0.39 >More info 0.50 >More info Col-0 0 h powdery mildew Original data GEO bulk
293 GO5; harvested 8h continiously maintained in high
CO2;		 -0.38 >More info -0.51 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
294 bri1-116 0.15 >More info 0.73 >More info Col seedling Original data GEO bulk
295 OE WRKY63.3 high light 0.35 >More info 0.53 >More info OE WRKY40.4 high light high light for 1h at 1000 μE m-2s-1 leaf Original data GEO bulk
296 csn4-1 dark 0.51 >More info 0.36 >More info WT light Original data GEO bulk
297 Cycloheximide 3 h 0.36 >More info 0.51 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
298 IRP1-OE-Ctrl--root 0.37 >More info 0.50 >More info COL-0-Ctrl--root root Original data
299 Col-0 mbs1-1 HL 3h -0.34 >More info -0.52 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
300 IAA7mII over-expressor IAA Treated 0.17 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
301 WT NAA 2h -0.23 >More info -0.63 >More info WT 0h Leaf tissue Original data GEO bulk
302 Light 0.5h steady-state 0.36 >More info 0.50 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
303 seedlings protease IV 0.35 >More info 0.51 >More info seedlings nontreated control whole seedling Original data
304 auxin and brassinazole seedlings 0.52 >More info 0.33 >More info auxin seedlings Original data GEO bulk
305 chito-octamer 0.31 >More info 0.54 >More info Col Mock Original data GEO bulk
306 WT +Pep2 2h 0.50 >More info 0.35 >More info WT untreated Pep2 Original data GEO bulk
307 Mutant arf2-6 -0.26 >More info -0.59 >More info Col Original data GEO bulk
308 amiR-tor induced 6d 0.31 >More info 0.53 >More info amiR-tor 6d C 6 days estradiol-treated seedlings Original data GEO bulk
309 CCA14 dark late -0.22 >More info -0.62 >More info Col dark late Original data GEO bulk
310 rosette Light Wounded 0.32 >More info 0.51 >More info rosette Light Control Original data GEO bulk
311 pmr4-1 powdery mildew 0.28 >More info 0.55 >More info WT powdery mildew uninoculated Original data GEO bulk
312 cat2-2; 8h switch to ambient CO2 concentrations; 0.58 >More info 0.25 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
313 pnp1-1 1wk -P 0.54 >More info 0.28 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
314 ARR22-ox (t-zeatin 3 h) 0.50 >More info 0.32 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
315 gun1-9 control 0.31 >More info 0.51 >More info Col-0 control Original data GEO bulk
316 WT 3h -P 0.32 >More info 0.50 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
317 cs26 short-day -0.32 >More info -0.50 >More info Leaves-WT-SD leaf Original data GEO bulk
318 atmospheric CO2 high Mg shoot 0.50 >More info 0.31 >More info atmospheric CO2 normal Mg shoot Shoot Original data
319 rosettes WT drought 0.52 >More info 0.29 >More info rosettes WT watered Original data GEO bulk
320 WT +elf18 2h 0.31 >More info 0.50 >More info WT untreated elf18 Original data GEO bulk
321 clf-28 swn-7 0.50 >More info 0.30 >More info Col whole plant Original data GEO bulk
322 col-5 DC3000 4h 0.25 >More info 0.55 >More info col-5 MgCl2 4h Whole leaf Original data GEO bulk
323 Col-0 2HS 0.30 >More info 0.50 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
324 A. thaliana-A. halleri hybrid -0.52 >More info -0.27 >More info A. thaliana mature leaves before flowering Original data GEO bulk
325 P.p 10.5hai 0.25 >More info 0.54 >More info At-Control roots Original data GEO bulk
326 Heat shock optimum 0.14 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
327 pif5 high R/FR 0.29 >More info 0.50 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
328 cat2-long-day 2d -0.53 >More info -0.25 >More info Col0-LD2 transferred to air (400 ppm) for 2 days in long day regime (16h light/8h dark) rosette leaf material Original data GEO bulk
329 plant (tga2-5-6) 4h phytoprostane A1 0.51 >More info 0.27 >More info plant (tga2-5-6) 4h control Original data GEO bulk
330 +1.6 mM Tween 20 1 h. 0.19 >More info 0.59 >More info +distilled water 1 h. Original data GEO bulk
331 penta Control 0.50 >More info 0.27 >More info Laer Control leaf discs Original data GEO bulk
332 Col in Pi deficiency medium 0.23 >More info 0.54 >More info Col in control medium root Original data GEO bulk
333 1h light (+Lincomycin) 0.27 >More info 0.50 >More info 1h light (-Lincomycin) seedlings Original data GEO bulk
334 Leaf wounded 0.24 >More info 0.53 >More info Leaf control vegetative leaf Original data GEO bulk
335 IAA 1 h -0.22 >More info -0.54 >More info Mock 1 h Original data Basic hormone treatment of seedlings
336 Red/FR Light 4 h -0.26 >More info -0.50 >More info FarRed Light 4 h Original data Light treatments
337 Col-0 INA 6d 0.22 >More info 0.54 >More info Col-0 MOCK 6d Original data GEO bulk
338 WT+chitooctaose 0.17 >More info 0.59 >More info WT+water chitooctaose seedlings Original data GEO bulk
339 slr-1 0h NAA 0.26 >More info 0.50 >More info Col-0 0h NAA Original data GEO bulk
340 CeO2 germinant -0.18 >More info -0.58 >More info Millipore Water germinant CeO2 seedling Original data
341 toc1-1-77hr 0.60 >More info 0.15 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
342 til1-1 22C 0.23 >More info 0.51 >More info Col-0 22C Original data GEO bulk
343 Al treated 0.21 >More info 0.53 >More info control Original data GEO bulk
344 embryo paclobutrazol 0.50 >More info 0.23 >More info embryo-control paclobutrazol embryo Original data GEO bulk
345 Col-0 24hpi A. brassicicola 0.70 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
346 Protoplast Induced 0.19 >More info 0.53 >More info Uninduced Original data GEO bulk
347 spx1 spx2 complete 0.50 >More info 0.21 >More info WT complete seedlings Original data
348 G3P 0.64 >More info 0.06 >More info Mock distal leaves Original data GEO bulk
349 bZIP1ko mutant N+Light+ 0.53 >More info 0.16 >More info WT-sib N+Light+ whole plant Original data GEO bulk
350 JA 3h 0.13 >More info 0.56 >More info EtOH 3h 3hr Original data GEO bulk
351 gun1-1 +lincomycin -0.18 >More info -0.51 >More info Col-0 +lincomycin Original data GEO bulk
352 elf3-7-23ºC 0.18 >More info 0.50 >More info WT-23ºC Original data GEO bulk
353 root longitudinal zone-3 pH 4.6 0.14 >More info 0.53 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
354 SA Treated 0.58 >More info 0.08 >More info Water Original data GEO bulk
355 2hr continuous KNO3 ECR cell 0.06 >More info 0.60 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
356 FLIGHT TAGESB plate6 ROOTS 0.08 >More info 0.54 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
357 vte2 leaves 120h LT 0.56 >More info 0.04 >More info Col leaves 120h LT 12h 9-11th adult leaves Original data
358 T101D 10mM NH4NO3 0.09 >More info 0.51 >More info col 10mM NH4NO3 Root Original data
359 ein2 0.53 >More info 0.05 >More info Col-0 Leaves Original data GEO bulk
360 GRX-overexpression seedlings IAA -0.08 >More info -0.50 >More info WT seedlings IAA Seedlings Original data GEO bulk
361 root longitudinal zone-2 -Fe 0.00 >More info 0.53 >More info root longitudinal zone-2 standard Original data GEO bulk
362 vtc1-1 0.02 >More info -0.55 >More info Col-0 whole plant Original data GEO bulk
363 HairpinZ 4 h (leaf) 0.55 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
364 Col PSTDC3000 24h 0.64 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
365 pvip1 pvip2 seedling 0.51 >More info -0.02 >More info Col-0 seedling seedling Original data GEO bulk
366 opr3 JA 2 h -0.04 >More info 0.51 >More info opr3 0 h Original data GEO bulk
367 CCA1-ox 6am non-polysomal -0.07 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
368 P. infestans 6 h (leaf) 0.58 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
369 seed germinating in countinuous light 24h SL -0.27 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
370 Shoot apex inflorescence (after bolting) -0.34 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages