4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on RRE1 Chitin
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List of experiments correlated with "RRE1 Chitin"  Help Download transcriptome of top 30
Score Experiment Correlation from
RRE1 Chitin		 Correlation to
RRE1 Chitin		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 RRE1 Chitin 1.00 >More info 1.00 >More info Chitin Original data GEO bulk
2 RRE2 Chitin 0.89 >More info 0.90 >More info Chitin Original data GEO bulk
3 RRE2 0.82 >More info 0.78 >More info Col C Original data GEO bulk
4 RRE1 0.67 >More info 0.74 >More info Col C Original data GEO bulk
5 Methyl Jasmonate 3 h 0.60 >More info 0.70 >More info Mock 3 h Original data Basic hormone treatment of seedlings
6 plant (tga2-5-6) 4h OPDA 0.64 >More info 0.61 >More info plant (tga2-5-6) 4h control Original data GEO bulk
7 JA 0.57 >More info 0.68 >More info Col-0 mock Whole seedling Original data GEO bulk
8 Col-O high light 0.56 >More info 0.66 >More info Col-O bule light Original data GEO bulk
9 Chitin -0.77 >More info -0.42 >More info Col C Original data GEO bulk
10 Osmotic Stress 24 h (root) 0.61 >More info 0.58 >More info Stress mock 24 h (root) Original data Stress treatments
11 NahG 0.62 >More info 0.55 >More info Col-0 Leaves Original data GEO bulk
12 Mature callus 0.47 >More info 0.70 >More info Young callus hypocotyls Original data GEO bulk
13 plant (Col-0) 4h OPDA 0.55 >More info 0.61 >More info plant (Col-0) 4h control Original data GEO bulk
14 OPDA 4 h 0.55 >More info 0.61 >More info Col-0 Original data GEO bulk
15 DC3000 24h 0.39 >More info 0.77 >More info Mock 24h DC3000 Original data GEO bulk
16 cop1 Seedling BL 0.50 >More info 0.64 >More info WT Seedling BL Original data GEO bulk
17 root - 04% oxygen - 2h 0.28 >More info 0.84 >More info root - 21% oxygen - 2h Original data GEO bulk
18 Pst-DC3000(avrRpm1)-4hpi 0.43 >More info 0.68 >More info Pst-DC3000-4hpi Original data GEO bulk
19 seedling -S Exp 0.43 >More info 0.68 >More info seedling FN Exp seedling Original data
20 ein3 eil1 0.54 >More info 0.57 >More info Col-0 mock Whole seedling Original data GEO bulk
21 Methyl Jasmonate 1 h 0.49 >More info 0.62 >More info Mock 1 h Original data Basic hormone treatment of seedlings
22 6h +Pi -0.42 >More info -0.69 >More info 6h -Pi root Original data GEO bulk
23 high R/FR JA spray 0.42 >More info 0.69 >More info high R/FR mock spray high R/FR JA spray Original data GEO bulk
24 low water potential 0.55 >More info 0.55 >More info control Col-0 -1.2 MPa whole seedlings Original data GEO bulk
25 Leafminer damaged seedlings 0.53 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
26 WT Shoot Hypoxia 0.39 >More info 0.69 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
27 Leafminer locally damaged thaliana seedlings 0.53 >More info 0.54 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
28 rosettes drought 0.52 >More info 0.54 >More info rosettes watered Original data GEO bulk
29 ice1 control 0.43 >More info 0.63 >More info WT control Original data GEO bulk
30 WT H2O2 3h 0.44 >More info 0.62 >More info WT water 3h 3h_H2O2 Original data GEO bulk
31 Botrytis cinerea 48h 0.43 >More info 0.62 >More info control 48h Original data GEO bulk
32 whole roots 140 mM NaCl 30 minutes 0.33 >More info 0.70 >More info whole roots standard Original data GEO bulk
33 T8 leaf-drought 0.45 >More info 0.57 >More info T8 leaf-well watered Original data GEO bulk
34 arr10 arr12 -0.48 >More info -0.54 >More info DMSO--WT DMSO roots Original data GEO bulk
35 aox1a(line) MLD stressed 0.35 >More info 0.67 >More info WT(Col0) MLD stressed (control aox1a) leaf Original data
36 Dark 2day hml 0.51 >More info 0.50 >More info 0h hml Original data
37 Mutant gh3.5-1D (AvrRpt2) 0.44 >More info 0.57 >More info Col-0 (AvrRpt2) Original data GEO bulk
38 flu 0.42 >More info 0.59 >More info WT Col Original data GEO bulk
39 Anoxia 0.44 >More info 0.57 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
40 CMP 24hr 0.45 >More info 0.56 >More info Acetone 24hr root Original data GEO bulk
41 root cells cortex 140mM NaCl 48 hours 0.44 >More info 0.57 >More info root cells cortex standard 1 hour root cells cortex Original data
42 Homozygous-AtcesA4 0.52 >More info 0.48 >More info Heterozygous-AtcesA4 rosette Original data GEO bulk
43 rosettes WT drought 0.42 >More info 0.58 >More info rosettes WT watered Original data GEO bulk
44 PstDC3000 48h -0.32 >More info -0.68 >More info WT untreated 48hr leaf Original data GEO bulk
45 ASL9-ox -0.49 >More info -0.51 >More info WT aerial parts of seedlings Original data GEO bulk
46 MPK6 ox Shoot Hypoxia 0.35 >More info 0.65 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
47 ARR22-ox 0.51 >More info 0.48 >More info Col-0 Original data Cytokinin treatment of seedlings
48 T6 leaf-drought 0.44 >More info 0.54 >More info T6 leaf-well watered Original data GEO bulk
49 Laer pretreat JA Flg22 0h 0.40 >More info 0.58 >More info Laer pretreat water control leaf discs Original data GEO bulk
50 Col0-PsmES4326-24hpi 0.37 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
51 PBZ 0.42 >More info 0.55 >More info none PBZ Rosette Original data GEO bulk
52 atmyc2 cop1 Seedling BL 0.40 >More info 0.57 >More info WT Seedling BL Original data GEO bulk
53 Col-0 under 4 days salt 0.38 >More info 0.59 >More info Col-0 under control 4 days salt treatment rosette Original data
54 ice1 6H Cold 0.40 >More info 0.56 >More info WT 6H Cold Original data GEO bulk
55 rosette Dark Wounded 0.33 >More info 0.63 >More info rosette Dark Control Original data GEO bulk
56 ABA JA 24h 0.34 >More info 0.62 >More info EtOH 24h 24hr Original data GEO bulk
57 WT (Col) glucose -0.41 >More info -0.55 >More info WT (Col) glucose seedlings Original data GEO bulk
58 whole roots 140 mM NaCl 1 hour 0.31 >More info 0.65 >More info whole roots standard Original data GEO bulk
59 Mutant nph4-1_arf19-1 0.41 >More info 0.54 >More info Col Original data GEO bulk
60 flu over-tAPX 0.38 >More info 0.57 >More info WT Col Original data GEO bulk
61 ein2 1% sucrose 14-day-old 0.37 >More info 0.58 >More info Col-0 1% sucrose 14-day-old Original data GEO bulk
62 rpoTmp(line) MLD stressed 0.37 >More info 0.58 >More info WT(Col0) MLD stressed (control rpoTmp) leaf Original data
63 plant (tga2-5-6) 4h phytoprostane A1 0.34 >More info 0.60 >More info plant (tga2-5-6) 4h control Original data GEO bulk
64 ABA DFPM 0.43 >More info 0.51 >More info control Original data GEO bulk
65 Methyl Jasmonate 0.5 h 0.40 >More info 0.53 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
66 Mutant axr3-1 0.43 >More info 0.50 >More info Col Original data GEO bulk
67 Col-0 2HS 0.34 >More info 0.59 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
68 root cells cortex 140mM NaCl 20 hours 0.42 >More info 0.50 >More info root cells cortex standard 1 hour root cells cortex Original data
69 roottip hypoxia total 0.24 >More info 0.67 >More info roottip control total Original data GEO bulk
70 gh3.5-1D 48 hpi 0.40 >More info 0.51 >More info Col-0 uninoculated Original data GEO bulk
71 4d red light grown hmr-5 seedlings 0.38 >More info 0.53 >More info 4d red light grown WT(Col-0) seedlings Original data
72 eds16 whole leaf 1dpi 0.36 >More info 0.54 >More info Col whole leaf 1dpi whole leaf Original data GEO bulk
73 shoot hypoxia total 0.25 >More info 0.65 >More info shoot control total Original data GEO bulk
74 coi1-PsmES4326-24hpi -0.38 >More info -0.52 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
75 17 2h unlabelled -0.38 >More info -0.52 >More info 27 1h unlabelled 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
76 2 hr Hypoxia Total RNA 0.33 >More info 0.57 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
77 Fenclorim 4hr 0.33 >More info 0.56 >More info Acetone 4hr root Original data GEO bulk
78 root stele 40 mM NaCls 0.33 >More info 0.56 >More info root stele Original data GEO bulk
79 Osmotic Stress 24 h (shoot) 0.37 >More info 0.52 >More info Stress mock 24 h (shoot) Original data Stress treatments
80 Heat and anoxia 0.35 >More info 0.54 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
81 penta Alternaria 3dpi 0.37 >More info 0.52 >More info Laer Alternaria 3dpi leaf discs Original data GEO bulk
82 aphid infested 0.24 >More info 0.65 >More info control aphid infested Leaves Original data GEO bulk
83 aphid infested 0.24 >More info 0.65 >More info CTR Original data GEO bulk
84 root cells cortex 140mM NaCl 1 hour 0.37 >More info 0.52 >More info root cells cortex standard 1 hour root cells cortex Original data
85 ABA 1 h 0.31 >More info 0.58 >More info Mock 1 h Original data Basic hormone treatment of seedlings
86 ABA+DMTU 0.32 >More info 0.56 >More info control Original data GEO bulk
87 shoot-10 μM DEX- 6 hr 0.34 >More info 0.54 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
88 rosettes myoox drought 0.36 >More info 0.52 >More info rosettes myoox watered Original data GEO bulk
89 nhx5-1/nhx6 0.36 >More info 0.52 >More info WT Rosette leaf Original data GEO bulk
90 sid2-2 safener 0.35 >More info 0.53 >More info safener treated safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
91 WT AntimycinA 3h 0.36 >More info 0.52 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
92 root endodermis and quiescent center 40 mM NaCl 0.24 >More info 0.64 >More info root endodermis and quiescent center Original data GEO bulk
93 Sulfometuron EC50 0.37 >More info 0.51 >More info Carrier Original data GEO bulk
94 aox1a:rpoTmp MLD stressed -0.36 >More info -0.52 >More info WT(Col0) MLD stressed (control aox1a:rpoTmp) leaf Original data
95 NJ15 0.31 >More info 0.57 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
96 tfl1-1-23ºC 0.36 >More info 0.51 >More info WT-23ºC Original data GEO bulk
97 root longitudinal zone-4 NaCl 0.23 >More info 0.64 >More info root longitudinal zone-4 Original data GEO bulk
98 seedling h S Exp -0.25 >More info -0.62 >More info seedling -S Exp seedling Original data
99 leaf13 0.32 >More info 0.54 >More info unwounded leaves none Original data GEO bulk
100 current injection 0.34 >More info 0.52 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
101 Shoot -Cs 0.28 >More info 0.58 >More info Control-shoot Original data GEO bulk
102 coi1-2 JA -0.33 >More info -0.52 >More info JA Whole seedling Original data GEO bulk
103 root cells epidermis 140mM NaCl 3 hours 0.34 >More info 0.51 >More info root cells epidermis standard 1 hour root cells epidermis Original data
104 TNT-seedlings 0.23 >More info 0.62 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
105 lug3 leaves -0.35 >More info -0.50 >More info WT-leaves matured rosette leaves Original data GEO bulk
106 WT 30μM arsenate 8 hours. 0.27 >More info 0.58 >More info WT control (not supplemented). Original data
107 Base wox4 -0.33 >More info -0.51 >More info Base Col base of stem Original data GEO bulk
108 bak1-3 +Pep2 10h 0.34 >More info 0.50 >More info WT +Pep2 10h Pep2 Original data GEO bulk
109 AgNO3 3 h 0.32 >More info 0.51 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
110 Mutant axr3-1 (IAA) 0.33 >More info 0.50 >More info Col (IAA) Original data GEO bulk
111 Protoplast Induced 0.16 >More info 0.67 >More info Uninduced Original data GEO bulk
112 Col-0 low oxygen 0.30 >More info 0.53 >More info Col-0 control low oxygen root Original data GEO bulk
113 Light 3day hml 0.25 >More info 0.58 >More info 0h hml Original data
114 cngc4 0.26 >More info 0.57 >More info Ws-2 Seedlings Original data GEO bulk
115 root epidermis and lateral root cap 40 mM NaCl 0.31 >More info 0.51 >More info root epidermis and lateral root cap Original data GEO bulk
116 WT-16ºC -0.25 >More info -0.57 >More info WT-23ºC Original data GEO bulk
117 FarRed Light 45min -0.17 >More info -0.64 >More info White Light 45min Original data Light treatments
118 Ws leaf 100mM NaCl 0.28 >More info 0.53 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
119 Heat shock optimum 0.16 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
120 Ws 100mM NaCl 0.28 >More info 0.53 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
121 low CO2 + light 0.26 >More info 0.55 >More info normal CO2 + light Original data GEO bulk
122 whole roots 140 mM NaCl 32 hour 0.30 >More info 0.51 >More info whole roots standard Original data GEO bulk
123 WT seedlings MV 0.28 >More info 0.53 >More info WT seedlings control Seedlings Original data GEO bulk
124 INA -0.25 >More info -0.56 >More info CK INA seedling Original data
125 root cells epidermis 140mM NaCl 48 hours 0.31 >More info 0.50 >More info root cells epidermis standard 1 hour root cells epidermis Original data
126 eds16 whole leaf 3dpi 0.21 >More info 0.60 >More info Col whole leaf 3dpi whole leaf Original data GEO bulk
127 sid2-avrB-6h 0.29 >More info 0.51 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
128 toc1-1-77hr 0.29 >More info 0.51 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
129 rhd2 0.29 >More info 0.51 >More info WT Small excised segments of primary root tissue corresponding to root-hair elongation zone Original data GEO bulk
130 Col0 roots 2hr KNO3 nitrogen -0.05 >More info -0.75 >More info Col0 roots 2hr KCl control root Original data GEO bulk
131 hai1-2 low water potential 0.25 >More info 0.54 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
132 root longitudinal zone-3 NaCl 0.29 >More info 0.50 >More info root longitudinal zone-3 Original data GEO bulk
133 NaCl Col 0.25 >More info 0.54 >More info Col Original data GEO bulk
134 hira-root -0.20 >More info -0.59 >More info WT-root root Original data
135 Phytoprostane A1 4 h 0.27 >More info 0.51 >More info Col-0 Original data GEO bulk
136 8hr-pH4.5 0.25 >More info 0.53 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
137 bri1-116 0.05 >More info 0.73 >More info Col seedling Original data GEO bulk
138 bbx24 in Simulated Shade -0.27 >More info -0.51 >More info WT in simulated shade shade seedling Original data
139 Heat 2 days recovery 0.26 >More info 0.51 >More info Mock 2 days recovery seedling Original data GEO bulk
140 sfr6 drought -0.27 >More info -0.50 >More info WT drought All aerial tissue Original data GEO bulk
141 ABA 0.5 h 0.19 >More info 0.57 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
142 siliques AtHb1 control 0.24 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
143 FarRed Light 4 h 0.25 >More info 0.50 >More info White Light 4 h Original data Light treatments
144 roottip control pWOL 0.23 >More info 0.52 >More info roottip control total control roottip Original data GEO bulk
145 shoot-10 μM DEX- 12 hr 0.23 >More info 0.52 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
146 root hypoxia total 0.22 >More info 0.52 >More info root control total Original data GEO bulk
147 WT NAA 2h -0.18 >More info -0.56 >More info WT 0h Leaf tissue Original data GEO bulk
148 Ba1 UV 0.19 >More info 0.54 >More info Ba1 mock UV seedling Original data
149 IMI 4mM 0.23 >More info 0.50 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
150 Rose Bengal 0.5 uM 0.16 >More info 0.56 >More info Control RB and PER Rose Bengal Original data
151 root - 08% oxygen - 2h 0.13 >More info 0.59 >More info root - 21% oxygen - 2h Original data GEO bulk
152 vtc1-1 -0.12 >More info -0.60 >More info Col-0 whole plant Original data GEO bulk
153 opr3 JA 0.5 h -0.01 >More info 0.73 >More info opr3 0 h Original data GEO bulk
154 til1-1 22C 0.05 >More info 0.66 >More info Col-0 22C Original data GEO bulk
155 0h ivd 0.18 >More info 0.53 >More info 0h wt Original data
156 root - 04% oxygen - 30min 0.12 >More info 0.59 >More info root - 21% oxygen - 30min Original data GEO bulk
157 Col-0 wt Hypoxic 0.11 >More info 0.60 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
158 cell culture 4 h phytoprostane A1 0.15 >More info 0.54 >More info cell culture 4 h control Original data GEO bulk
159 abi1 hypocotyl 0.10 >More info 0.59 >More info Ler hypocotyl hypocotyl Original data GEO bulk
160 cat2-short-day 4d 0.12 >More info 0.56 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
161 IAA7mII over-expressor IAA Treated -0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
162 M6PR transgenic leaf 100mM NaCl -0.18 >More info -0.50 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
163 Shoot apex inflorescence (after bolting) 0.02 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
164 WT Root Hypoxia 0.05 >More info 0.62 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
165 triploid female excess -0.12 >More info -0.55 >More info tetraploid Original data GEO bulk
166 Leaf wounded 0.06 >More info 0.61 >More info Leaf control vegetative leaf Original data GEO bulk
167 IAA 0h -0.10 >More info -0.57 >More info control 0h root Original data GEO bulk
168 sex1-3 0.12 >More info 0.54 >More info Col-WT leaves Original data GEO bulk
169 PsJN -0.15 >More info -0.51 >More info Control inoculated with the PGPR bacterial model Burkholderia phytofirmans PsJN Plantlet Original data GEO bulk
170 SA 24h -0.08 >More info -0.58 >More info EtOH 24h 24hr Original data GEO bulk
171 Ibuprofen 3 h 0.13 >More info 0.52 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
172 Light 3day ivd -0.13 >More info -0.52 >More info 0h ivd Original data
173 root - 01% oxygen - 2h 0.05 >More info 0.60 >More info root - 21% oxygen - 2h Original data GEO bulk
174 Whole root - low pH 3H 0.10 >More info 0.55 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
175 Laer pretreat GA Flg22 1h -0.06 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
176 ein2 mutant roots mock -0.10 >More info -0.54 >More info roots mock Original data GEO bulk
177 dorn1-1 Root 100 mM ATP 30 min -0.11 >More info -0.52 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
178 rgs1+no sugars -0.07 >More info -0.53 >More info WT+no sugars rosette leaves Original data GEO bulk
179 Col BTH -0.08 >More info 0.67 >More info Col rosettes Original data GEO bulk
180 upb1-1 elongation zone -0.08 >More info -0.51 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
181 shoot control p35S -0.04 >More info -0.54 >More info shoot control total Original data GEO bulk
182 seed germinating in countinuous light 24h SL -0.09 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
183 bZIP1ko mutant N+Light- 0.07 >More info 0.50 >More info WT-sib N+Light- whole plant Original data GEO bulk
184 1h +Pi -0.02 >More info -0.55 >More info 1h -Pi root Original data GEO bulk
185 seedling 30 min S Exp 0.05 >More info -0.62 >More info seedling -S Exp seedling Original data
186 4C 1h 0.02 >More info 0.53 >More info 4C 0h Original data GEO bulk
187 root - 08% oxygen - 30min -0.03 >More info 0.58 >More info root - 21% oxygen - 30min Original data GEO bulk
188 Col-0 24hpi A. brassicicola 0.52 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
189 sfr6 cold -0.02 >More info 0.56 >More info WT cold All aerial tissue Original data GEO bulk
190 -Sulfate 24 h -0.02 >More info 0.55 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
191 pip3 At2g19270 TDNA 9 0.01 >More info 0.50 >More info Col-0 whole plant Original data GEO bulk
192 IBM1 knockout -0.06 >More info 0.52 >More info WT Original data GEO bulk
193 xyl-grown cell culture- 1h 1mM Suc 0.11 >More info -0.55 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
194 CCA1-ox 6am non-polysomal -0.07 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
195 ABA 0.54 >More info -0.22 >More info control Original data GEO bulk
196 root - 04% oxygen - 48h -0.24 >More info 0.50 >More info root - 21% oxygen - 48h Original data GEO bulk
197 G3P 0.32 >More info -0.54 >More info Mock distal leaves Original data GEO bulk