4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Col-0 low oxygen
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List of experiments correlated with "Col-0 low oxygen"  Help Download transcriptome of top 30
Score Experiment Correlation from
Col-0 low oxygen		 Correlation to
Col-0 low oxygen		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Col-0 low oxygen 1.00 >More info 1.00 >More info Col-0 control low oxygen root Original data GEO bulk
2 root hypoxia total 0.81 >More info 0.84 >More info root control total Original data GEO bulk
3 roottip hypoxia total 0.78 >More info 0.83 >More info roottip control total Original data GEO bulk
4 2 hr Hypoxia Total RNA 0.77 >More info 0.81 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
5 9 hr Hypoxia Total RNA 0.79 >More info 0.79 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
6 Col-0 2HS 0.76 >More info 0.81 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
7 Col-0 wt Hypoxic 0.77 >More info 0.80 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
8 9 hr Hypoxia 1 hr recovery Total RNA 0.78 >More info 0.77 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
9 5-Triiodobenzoic acid3 h 0.73 >More info 0.82 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
10 WT Root Hypoxia 0.71 >More info 0.83 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
11 Anoxia 0.74 >More info 0.80 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
12 oligomycin 1 h 0.69 >More info 0.84 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
13 plant (tga2-5-6) 4h phytoprostane A1 0.69 >More info 0.83 >More info plant (tga2-5-6) 4h control Original data GEO bulk
14 AgNO3 3 h 0.72 >More info 0.78 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
15 Col upon hypoxia 6 hrs 0.78 >More info 0.71 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
16 WT 30μM arsenate 8 hours. 0.76 >More info 0.73 >More info WT control (not supplemented). Original data
17 9 hr Hypoxia IP RNA 0.73 >More info 0.75 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
18 TNT-seedlings 0.71 >More info 0.77 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
19 oligomycin 4 h 0.71 >More info 0.75 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
20 IAA/inhibitor B Treated 0.68 >More info 0.78 >More info IAA Treated Original data GEO bulk
21 MPK6 ox Root Hypoxia 0.72 >More info 0.71 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
22 CMP 4hr 0.73 >More info 0.69 >More info Acetone 4hr root Original data GEO bulk
23 inhibitor A Treated 0.65 >More info 0.77 >More info Negative Control Original data GEO bulk
24 9 hr Hypoxia 1 hr recovery IP RNA 0.71 >More info 0.71 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
25 inhibitor B Treated 0.63 >More info 0.78 >More info Negative Control Original data GEO bulk
26 Phytoprostane A1 4 h 0.63 >More info 0.77 >More info Col-0 Original data GEO bulk
27 root - 01% oxygen - 2h 0.56 >More info 0.84 >More info root - 21% oxygen - 2h Original data GEO bulk
28 Cocultivation 8 hrs root 0.68 >More info 0.72 >More info Mock cocultivation 8 hrs root Root Original data
29 WT seedlings MV 0.66 >More info 0.73 >More info WT seedlings control Seedlings Original data GEO bulk
30 root Dosed gold 0.73 >More info 0.66 >More info root No gold .125 mM gold 24 h roots Original data
31 MPK6 ox Shoot Hypoxia 0.61 >More info 0.78 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
32 0.125 mM gold 24 h 0.73 >More info 0.66 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
33 bbx24 in Simulated Shade -0.68 >More info -0.70 >More info WT in simulated shade shade seedling Original data
34 Heat and anoxia 0.62 >More info 0.75 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
35 P.p 6hai 0.74 >More info 0.62 >More info At-Control roots Original data GEO bulk
36 (Col-0)+200 uM As 0.66 >More info 0.70 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
37 IAA/inhibitor A Treated 0.66 >More info 0.68 >More info IAA Treated Original data GEO bulk
38 WT+H2O2 0.62 >More info 0.71 >More info WT H2O2 Original data GEO bulk
39 Col-0 37C 0.60 >More info 0.73 >More info Col-0 22C Original data GEO bulk
40 SA 0.70 >More info 0.63 >More info WT mock Whole seedling Original data GEO bulk
41 Root dark control 24h 0.64 >More info 0.69 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
42 Whole root - low pH 12H 0.62 >More info 0.71 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
43 WT AntimycinA 3h 0.68 >More info 0.65 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
44 2 hr Hypoxia IP RNA 0.64 >More info 0.68 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
45 Root dark control 7h 0.64 >More info 0.68 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
46 Col-0 HS 0.51 >More info 0.81 >More info Col-0 control heat shocked seedling Original data GEO bulk
47 WT (Col-0) heat shock 0.51 >More info 0.81 >More info WT (Col-0) whole seedling Original data GEO bulk
48 dicamba 0.69 >More info 0.63 >More info WT mock whole seedling Original data GEO bulk
49 Ws HS 0.52 >More info 0.79 >More info Ws control heat shocked seedling Original data GEO bulk
50 flu 0.62 >More info 0.68 >More info WT Col Original data GEO bulk
51 NJ15 0.51 >More info 0.79 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
52 Root submergence 24h 0.63 >More info 0.67 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
53 CeO2 germinant -0.54 >More info -0.76 >More info Millipore Water germinant CeO2 seedling Original data
54 Seedling-HeatStressed POLYSOMESmRNA 0.55 >More info 0.74 >More info Seedling-control POLYSOMESmRNA seedling Original data
55 WT Shoot Hypoxia 0.56 >More info 0.73 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
56 6h +Pi -0.60 >More info -0.69 >More info 6h -Pi root Original data GEO bulk
57 Seedling-HeatStressed TOTALmRNA 0.56 >More info 0.73 >More info Seedling-control TOTALmRNA seedling Original data
58 hira-root -0.65 >More info -0.63 >More info WT-root root Original data
59 1h +Pi -0.58 >More info -0.70 >More info 1h -Pi root Original data GEO bulk
60 R. solani AG8 0.65 >More info 0.62 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
61 (Col-0)+100 uM As 0.60 >More info 0.66 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
62 P.p 30hai 0.73 >More info 0.53 >More info At-Control roots Original data GEO bulk
63 rcf1-1 cold 24h 0.57 >More info 0.68 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
64 whole roots 140 mM NaCl 1 hour 0.63 >More info 0.62 >More info whole roots standard Original data GEO bulk
65 P.p 2.5hai 0.64 >More info 0.61 >More info At-Control roots Original data GEO bulk
66 root cells epidermis 140mM NaCl 48 hours 0.57 >More info 0.68 >More info root cells epidermis standard 1 hour root cells epidermis Original data
67 Fenclorim 4hr 0.66 >More info 0.59 >More info Acetone 4hr root Original data GEO bulk
68 flu over-tAPX 0.57 >More info 0.68 >More info WT Col Original data GEO bulk
69 anac017-2 AntimycinA 3h -0.68 >More info -0.56 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
70 Seedling KUA1-IOX est 0.63 >More info 0.61 >More info Seedling KUA1-IOX mock Original data
71 root stele 40 mM NaCls 0.63 >More info 0.61 >More info root stele Original data GEO bulk
72 root epidermis and lateral root cap pH4.6 0.59 >More info 0.65 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
73 Col-Luc WT 3h antimycin A 0.61 >More info 0.63 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
74 shoot hypoxia total 0.45 >More info 0.79 >More info shoot control total Original data GEO bulk
75 whole roots 140 mM NaCl 30 minutes 0.59 >More info 0.64 >More info whole roots standard Original data GEO bulk
76 Cycloheximide 3 h 0.65 >More info 0.58 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
77 gai Control 0.65 >More info 0.58 >More info Laer Control leaf discs Original data GEO bulk
78 root cells cortex 140mM NaCl 48 hours 0.66 >More info 0.57 >More info root cells cortex standard 1 hour root cells cortex Original data
79 seedlings-week-old RECA1-overexpressing
transgenic		 0.65 >More info 0.58 >More info seedlings-week-old Col-0 seedlings Original data
80 root cells cortex 140mM NaCl 20 hours 0.63 >More info 0.59 >More info root cells cortex standard 1 hour root cells cortex Original data
81 cngc4 0.53 >More info 0.69 >More info Ws-2 Seedlings Original data GEO bulk
82 9m.KCl 0.61 >More info 0.60 >More info To. KCl 14 day old Roots Original data GEO bulk
83 6-trichlorophenoxyacetic acid 3 h 0.49 >More info 0.72 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
84 bak1-3 +Pep2 10h 0.64 >More info 0.56 >More info WT +Pep2 10h Pep2 Original data GEO bulk
85 Salt Stress 24 h (root) 0.64 >More info 0.56 >More info Stress mock 24 h (root) Original data Stress treatments
86 root protoplasts 40 mM NaCl 0.58 >More info 0.62 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
87 K starvation (root) 0.62 >More info 0.58 >More info Ws (root) Original data GEO bulk
88 Root -K 0.62 >More info 0.58 >More info Control-root Original data GEO bulk
89 15m.KCl 0.61 >More info 0.59 >More info To. KCl 14 day old Roots Original data GEO bulk
90 FHY3p dark+DEX -0.66 >More info -0.53 >More info FHY3p dark+mock Original data GEO bulk
91 CMP 24hr 0.66 >More info 0.53 >More info Acetone 24hr root Original data GEO bulk
92 plant (Col-0) 4h phytoprostane A1 0.54 >More info 0.65 >More info plant (tga2-5-6) 4h control Original data GEO bulk
93 Root submergence 7h 0.59 >More info 0.60 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
94 root cells cortex 140mM NaCl 1 hour 0.62 >More info 0.56 >More info root cells cortex standard 1 hour root cells cortex Original data
95 (Ws-2)+100 uM As 0.63 >More info 0.55 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
96 WT-16ºC -0.59 >More info -0.59 >More info WT-23ºC Original data GEO bulk
97 PNO8 3 h 0.54 >More info 0.63 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
98 Whole root - low pH 3H 0.46 >More info 0.71 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
99 upb1-1 elongation zone -0.50 >More info -0.66 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
100 P.p 10.5hai 0.68 >More info 0.48 >More info At-Control roots Original data GEO bulk
101 root stele pH4.6 0.49 >More info 0.67 >More info root stele pH5.7 Original data GEO bulk
102 root - 01% oxygen - 48h 0.45 >More info 0.71 >More info root - 21% oxygen - 48h Original data GEO bulk
103 Tsu-1 -Fe 24h 0.45 >More info 0.71 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
104 Tsu -Fe 24h Roots 0.45 >More info 0.71 >More info Tsu +Fe 24h Roots Original data GEO bulk
105 Col-0 9 hpi A. brassicicola 0.58 >More info 0.57 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
106 toc1-1-81hr 0.51 >More info 0.64 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
107 IMI 4mM 0.62 >More info 0.53 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
108 root cells cortex 140mM NaCl 8 hours 0.64 >More info 0.50 >More info root cells cortex standard 1 hour root cells cortex Original data
109 Col-0 low oxygen 0.67 >More info 0.47 >More info Col-0 Original data GEO bulk
110 DFPM 0.64 >More info 0.50 >More info control Original data GEO bulk
111 Heat 0.47 >More info 0.67 >More info Control 90 minutes at 38°C. Original data GEO bulk
112 chito-tetramer 0.59 >More info 0.54 >More info Col Mock Original data GEO bulk
113 whole roots -Fe 72 hour 0.57 >More info 0.56 >More info whole roots standard Original data GEO bulk
114 ein2-1 9 hpi A. brassicicola 0.52 >More info 0.61 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
115 Selenate (root) 0.62 >More info 0.51 >More info Ws (root) Original data GEO bulk
116 Root Selenate 0.62 >More info 0.51 >More info Root control 40 micromolar selenate Root Original data GEO bulk
117 WT H2O2 3h 0.54 >More info 0.59 >More info WT water 3h 3h_H2O2 Original data GEO bulk
118 Fe starvation 72 h 0.57 >More info 0.56 >More info Control Original data GEO bulk
119 pepr1-1 Pepr2-3 +Pep2 2h -0.53 >More info -0.60 >More info WT +Pep2 2h Pep2 Original data GEO bulk
120 sid2-2 9 hpi A. brassicicola 0.55 >More info 0.58 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
121 toc1-1-85hr 0.43 >More info 0.70 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
122 Rose Bengal 0.5 uM 0.40 >More info 0.73 >More info Control RB and PER Rose Bengal Original data
123 root cells epidermis 140mM NaCl 3 hours 0.49 >More info 0.64 >More info root cells epidermis standard 1 hour root cells epidermis Original data
124 8hr-pH4.5 0.50 >More info 0.62 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
125 phr1 Shoot-Pi 0.60 >More info 0.52 >More info WT Root-Pi shoots Original data GEO bulk
126 SCR-GR Time 12H Dex 0.65 >More info 0.47 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
127 root columella root cap 40 mM NaCl 0.56 >More info 0.56 >More info root columella root cap Original data GEO bulk
128 root cells cortex 140mM NaCl 3 hours 0.63 >More info 0.49 >More info root cells cortex standard 1 hour root cells cortex Original data
129 root endodermis and quiescent center 40 mM NaCl 0.61 >More info 0.50 >More info root endodermis and quiescent center Original data GEO bulk
130 Nicotinamide-73hr 0.59 >More info 0.52 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
131 toc1-1-53hr 0.48 >More info 0.63 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
132 root cells endodermis 140mM NaCl 3 hours 0.61 >More info 0.49 >More info root cells endodermis standard 1 hour root cells endodermis Original data
133 root cells epidermis 140mM NaCl 20 hours 0.51 >More info 0.59 >More info root cells epidermis standard 1 hour root cells epidermis Original data
134 whole roots -Fe 48 hour 0.56 >More info 0.54 >More info whole roots standard Original data GEO bulk
135 QK HS 0.49 >More info 0.61 >More info QK control heat shocked seedling Original data GEO bulk
136 2hr transitory KNO3 PrR cell 0.42 >More info 0.68 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
137 shoot-10 μM DEX- 6 hr 0.54 >More info 0.55 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
138 safener treated 0.56 >More info 0.53 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
139 toc1-1-57hr 0.55 >More info 0.54 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
140 Col-0 Root 100 mM ATP 30 min 0.52 >More info 0.57 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
141 roots bhlh100/101 0uM Fe 0.51 >More info 0.58 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
142 Nicotinamide-61hr 0.58 >More info 0.51 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
143 root cells cortex 140mM NaCl 32 hours 0.61 >More info 0.48 >More info root cells cortex standard 1 hour root cells cortex Original data
144 Col0-PsmES4326-24hpi 0.48 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
145 35S::PI ap3-3 35S::AP-GR +DEX 0.47 >More info 0.62 >More info 0hr DEX Original data GEO bulk
146 low CO2 + light 0.54 >More info 0.54 >More info normal CO2 + light Original data GEO bulk
147 Ibuprofen 3 h 0.41 >More info 0.67 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
148 toc1-1-65hr 0.47 >More info 0.61 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
149 2hr continuous KNO3 PrR cell 0.49 >More info 0.59 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
150 T101D 10mM NH4NO3 -0.49 >More info -0.59 >More info col 10mM NH4NO3 Root Original data
151 WT 2-4h Xanthomonas 0.52 >More info 0.55 >More info WT T0 Original data GEO bulk
152 Col ozone 3h 0.41 >More info 0.66 >More info Col clean-air 3h ozone Original data GEO bulk
153 Col-0 under 4 days salt 0.60 >More info 0.47 >More info Col-0 under control 4 days salt treatment rosette Original data
154 Nicotinamide-81hr 0.59 >More info 0.48 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
155 Nicotinamide-57hr 0.59 >More info 0.48 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
156 Col-0 flu HL 3h 0.54 >More info 0.52 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
157 spch 0.51 >More info 0.55 >More info Col-0 WT whole seedling Original data GEO bulk
158 root cells endodermis 140mM NaCl 48 hours 0.56 >More info 0.50 >More info root cells endodermis standard 1 hour root cells endodermis Original data
159 Nicotinamide-65hr 0.59 >More info 0.47 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
160 oas-a1.1 Cd 18h 0.47 >More info 0.59 >More info Cd 18h root Root Original data GEO bulk
161 pip3 At2g19270 TDNA 9 0.46 >More info 0.60 >More info Col-0 whole plant Original data GEO bulk
162 root longitudinal zone-4 NaCl 0.48 >More info 0.58 >More info root longitudinal zone-4 Original data GEO bulk
163 cat2-2; 8h switch to ambient CO2 concentrations; 0.37 >More info 0.69 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
164 GO5; 8h switch to ambient CO2 concentrations; 0.42 >More info 0.64 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
165 Hydrogen Peroxide 500 uM 0.45 >More info 0.60 >More info Control RB and PER Hydrogen Peroxide Original data
166 root cells stele 140mM NaCl 32 hours 0.54 >More info 0.50 >More info root cells stele standard 1 hour root cells stele Original data
167 chito-octamer 0.51 >More info 0.53 >More info Col Mock Original data GEO bulk
168 seedlings protease IV 0.50 >More info 0.54 >More info seedlings nontreated control whole seedling Original data
169 protoplasted roots pH4.6 0.55 >More info 0.49 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
170 4d red light grown hmr-5 seedlings 0.55 >More info 0.49 >More info 4d red light grown WT(Col-0) seedlings Original data
171 root cells stele 140mM NaCl 3 hours 0.53 >More info 0.51 >More info root cells stele standard 1 hour root cells stele Original data
172 Osmotic Stress 24 h (root) 0.57 >More info 0.47 >More info Stress mock 24 h (root) Original data Stress treatments
173 whole roots -Fe 6 hour 0.36 >More info 0.68 >More info whole roots standard Original data GEO bulk
174 coi1-2 0.49 >More info 0.55 >More info Col-0 mock Whole seedling Original data GEO bulk
175 shoots bhlh100/101 0uM Fe 0.61 >More info 0.42 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
176 dde2-2 9 hpi A. brassicicola 0.55 >More info 0.48 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
177 BLM+INA 0.52 >More info 0.51 >More info CK BLM and INA seedling Original data
178 toc1-1-73hr 0.42 >More info 0.61 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
179 anac017-2 water 3h 0.32 >More info 0.71 >More info WT water 3h 3h_water Original data GEO bulk
180 gun1gun5 far-red pretreated -0.45 >More info -0.58 >More info WT far-red pretreated Original data GEO bulk
181 dark-hs 0.35 >More info 0.68 >More info dark-control seedling Original data
182 root cells stele 140mM NaCl 1 hour 0.54 >More info 0.48 >More info root cells stele standard 1 hour root cells stele Original data
183 Heat shock optimum 0.37 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
184 1.5 hr ammonium 0.47 >More info 0.55 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
185 sicy-192 gun1-101 cotyledons 0.46 >More info 0.56 >More info WT cotyledons cotyledons Original data
186 toc1-1-77hr 0.56 >More info 0.45 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
187 root cells endodermis 140mM NaCl 32 hours 0.57 >More info 0.44 >More info root cells endodermis standard 1 hour root cells endodermis Original data
188 Sulfometuron EC50 0.52 >More info 0.49 >More info Carrier Original data GEO bulk
189 cat2-short-day 2d 0.46 >More info 0.55 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
190 columella auxin 0.42 >More info 0.59 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
191 shoot-10 μM DEX- 12 hr 0.43 >More info 0.58 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
192 AtGATA2ox 0.56 >More info 0.44 >More info Col seedling Original data GEO bulk
193 SCR-GR Time 3H Dex 0.51 >More info 0.49 >More info SCR-GR Time 0H Dex Dex media for 3 hours Original data GEO bulk
194 MG132 3 h 0.37 >More info 0.63 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
195 Col BTH 0.33 >More info 0.67 >More info Col rosettes Original data GEO bulk
196 aox1a:rpoTmp untreated 0.47 >More info 0.53 >More info WT(Col0) untreated (control aox1a:rpoTmp) leaf Original data
197 Nicotinamide-53hr 0.56 >More info 0.43 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
198 cell culture 4 h phytoprostane A1 0.41 >More info 0.58 >More info cell culture 4 h control Original data GEO bulk
199 rosette Light Wounded 0.44 >More info 0.55 >More info rosette Light Control Original data GEO bulk
200 root cortex pH4.6 0.43 >More info 0.56 >More info root cortex pH5.7 Original data GEO bulk
201 pepr1-1 Pepr2-3 +Pep2 10h -0.51 >More info -0.47 >More info WT +Pep2 10h Pep2 Original data GEO bulk
202 24h +Pi -0.54 >More info -0.44 >More info 24h -Pi root Original data GEO bulk
203 root cells endodermis 140mM NaCl 8 hours 0.56 >More info 0.42 >More info root cells endodermis standard 1 hour root cells endodermis Original data
204 Laer treat paclobutrazol (PAC) 0.60 >More info 0.38 >More info Laer Control leaf discs Original data GEO bulk
205 WT flg22 2h 0.58 >More info 0.40 >More info WT 0h Leaf tissue Original data GEO bulk
206 Laer pretreat GA Flg22 1h 0.27 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
207 toc1-1-49hr 0.46 >More info 0.52 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
208 1 h Light Total RNA -0.38 >More info -0.60 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
209 Nicotinamide-85hr 0.50 >More info 0.47 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
210 Root -Cs 0.52 >More info 0.45 >More info Control-root Original data GEO bulk
211 Mutant arf19-1 (IAA) -0.50 >More info -0.47 >More info Col (IAA) Original data GEO bulk
212 FLIGHT TAGESB plate6 ROOTS 0.51 >More info 0.46 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
213 npr1-3 DCA 48h 0.35 >More info 0.62 >More info npr1-3 MOCK 48h Original data GEO bulk
214 atgsnor1-3-avrB-6h 0.47 >More info 0.50 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
215 Shoot -Cs 0.39 >More info 0.58 >More info Control-shoot Original data GEO bulk
216 RRE2 Chitin 0.59 >More info 0.37 >More info Chitin Original data GEO bulk
217 Fenclorim 24hr 0.58 >More info 0.38 >More info Acetone 24hr root Original data GEO bulk
218 shoots WT 0uM Fe 0.55 >More info 0.41 >More info shoots WT 100uM Fe 0uM Fe shoots Original data GEO bulk
219 Nicotinamide-69hr 0.52 >More info 0.44 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
220 root callus inducing medium 24h -0.52 >More info -0.44 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
221 Light 0.36 >More info 0.60 >More info Control Original data GEO bulk
222 root cells epidermis 140mM NaCl 8 hours 0.41 >More info 0.55 >More info root cells epidermis standard 1 hour root cells epidermis Original data
223 pmr5 pmr6 0.40 >More info 0.55 >More info Col-0 Original data GEO bulk
224 WT (Col) glucose -0.38 >More info -0.57 >More info WT (Col) glucose seedlings Original data GEO bulk
225 ABA DFPM 0.56 >More info 0.38 >More info control Original data GEO bulk
226 Leafminer damaged seedlings 0.38 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
227 arf2 mock 0.52 >More info 0.42 >More info Col mock Original data GEO bulk
228 GST NPP1 4 h (leaf) 0.50 >More info 0.44 >More info Mock 4 h (leaf) Original data Elicitor treatments
229 Mutant arf2 (etiol) 0.52 >More info 0.42 >More info Col (etiol) Original data GEO bulk
230 root cells columella root cap -Fe 0.59 >More info 0.35 >More info whole roots standard Original data GEO bulk
231 Mutant axr3-1 (IAA) 0.35 >More info 0.59 >More info Col (IAA) Original data GEO bulk
232 root - 04% oxygen - 48h 0.21 >More info 0.73 >More info root - 21% oxygen - 48h Original data GEO bulk
233 R. solani AG2-1 0.43 >More info 0.51 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
234 root control pGL2 0.40 >More info 0.53 >More info root control total control root Original data GEO bulk
235 WT+chitooctaose 0.39 >More info 0.54 >More info WT+water chitooctaose seedlings Original data GEO bulk
236 root endodermis and quiescent center pH4.6 0.40 >More info 0.53 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
237 estradiole-induced ANAC092 -0.33 >More info -0.60 >More info transgenic (empty vector inducible system) Original data GEO bulk
238 bak1-3 +Pep2 2h 0.42 >More info 0.51 >More info WT +Pep2 2h Pep2 Original data GEO bulk
239 WT NAA/flg 1h 0.55 >More info 0.37 >More info WT 0h Leaf tissue Original data GEO bulk
240 SCR-GR Time 1H Dex 0.39 >More info 0.53 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
241 root cells epidermis 140mM NaCl 32 hours 0.40 >More info 0.52 >More info root cells epidermis standard 1 hour root cells epidermis Original data
242 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.58 >More info 0.34 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
243 AvrRpm1 2 h (leaf) 0.53 >More info 0.38 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
244 Roots Cd -0.52 >More info -0.39 >More info Roots control Cd Root Original data GEO bulk
245 Col-0 ozone 0.53 >More info 0.38 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
246 Te ozone 0.52 >More info 0.39 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
247 WT 3H Cold 0.37 >More info 0.54 >More info WT control Original data GEO bulk
248 low CO2 + dark 0.39 >More info 0.52 >More info normal CO2 + light Original data GEO bulk
249 rhd2 0.40 >More info 0.51 >More info WT Small excised segments of primary root tissue corresponding to root-hair elongation zone Original data GEO bulk
250 Col-0 V. longisporum-inoculated 48 hpi 0.35 >More info 0.56 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
251 sfr6 drought -0.29 >More info -0.62 >More info WT drought All aerial tissue Original data GEO bulk
252 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.53 >More info 0.37 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
253 root callus inducing medium 48 h -0.51 >More info -0.39 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
254 35S:RPS4 eds1-2 8h -0.50 >More info -0.40 >More info 35S:RPS4 8h leaves Original data
255 anti-sense for AtAOX1a 0.24 >More info 0.66 >More info WT Original data GEO bulk
256 OsSAP11 expressing -0.40 >More info -0.50 >More info WT seedlings Original data GEO bulk
257 pericycle auxin 0.39 >More info 0.51 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
258 CT101 ozone 0.55 >More info 0.34 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
259 root cells endodermis 140mM NaCl 20 hours 0.51 >More info 0.38 >More info root cells endodermis standard 1 hour root cells endodermis Original data
260 Dark 3day ivd 0.52 >More info 0.37 >More info 0h ivd Original data
261 coi1-16 ein2 sid2 ozone 0.52 >More info 0.37 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
262 mkk1/mkk2 24h BTH rep 0.50 >More info 0.39 >More info Col-0 24h BTH rep Original data GEO bulk
263 SCR 48hr-S 0.37 >More info 0.52 >More info SCR 0hr endodermis Original data
264 +1.6 mM Tween 20 1 h. 0.57 >More info 0.32 >More info +distilled water 1 h. Original data GEO bulk
265 dorn1-1 Root 100 mM ATP 30 min -0.32 >More info -0.56 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
266 Mutant siz1-3 (Drought) 0.51 >More info 0.37 >More info Col-0 (Drought) Original data GEO bulk
267 siz1-3 drought 0.51 >More info 0.37 >More info Col-0 drought Original data GEO bulk
268 Whole root - low pH 6H 0.37 >More info 0.51 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
269 Chemically 0.37 >More info 0.51 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
270 3x(m) 0.25 >More info 0.63 >More info 2x two week old seedlings Original data
271 seedlings +5AC 0.56 >More info 0.31 >More info control seedlings 10-day old whole seedling Original data GEO bulk
272 Nicotinamide-49hr 0.57 >More info 0.30 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
273 Methyl Jasmonate 0.5 h 0.30 >More info 0.57 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
274 Wounding Stress3 h (root) -0.52 >More info -0.34 >More info Stress mock 3 h (root) Original data Stress treatments
275 C24 ozone 0.52 >More info 0.34 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
276 Nicotinamide-89hr 0.53 >More info 0.33 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
277 Mutant axr3-1 0.33 >More info 0.53 >More info Col Original data GEO bulk
278 leaf blade in D 0.34 >More info 0.52 >More info leaf blade in WL leaf blades Original data GEO bulk
279 siliques AtHb1 control 0.34 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
280 Nicotinamide-93hr 0.51 >More info 0.34 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
281 coi1-16 ein2 sid2 ctrl -0.53 >More info -0.32 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
282 Protoplast Induced 0.30 >More info 0.55 >More info Uninduced Original data GEO bulk
283 epidermis auxin 0.33 >More info 0.52 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
284 ani1 T16 -0.57 >More info -0.28 >More info WT T16 root tissue Original data GEO bulk
285 Fe starvation 3 h 0.35 >More info 0.50 >More info Control Original data GEO bulk
286 whole roots -Fe 3 hour 0.35 >More info 0.50 >More info whole roots standard Original data GEO bulk
287 Heat shock 20%Inhibition 0.35 >More info 0.50 >More info Heat shock baseline Photosynthesis at 20% inhibition from optimum leaf first fully expanded Original data GEO bulk
288 pmr5 0.35 >More info 0.50 >More info Col-0 Original data GEO bulk
289 Whole root - low pH 24H 0.50 >More info 0.34 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
290 Col in Pi deficiency medium 0.33 >More info 0.51 >More info Col in control medium root Original data GEO bulk
291 root endodermis -S -0.33 >More info -0.51 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
292 cat2-short-day 4d 0.25 >More info 0.59 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
293 RRE1 Chitin 0.53 >More info 0.30 >More info Chitin Original data GEO bulk
294 F1 hybrid submerged 0.30 >More info 0.53 >More info F1 hybrid air Original data GEO bulk
295 sex1-3 0.32 >More info 0.51 >More info Col-WT leaves Original data GEO bulk
296 Laer pretreat GA+JA Flg22 0h 0.50 >More info 0.32 >More info Laer pretreat water control leaf discs Original data GEO bulk
297 seedlings + TSA 0.51 >More info 0.31 >More info control seedlings 10-day old whole seedling Original data GEO bulk
298 SCR 24hr-S 0.32 >More info 0.50 >More info SCR 0hr endodermis Original data
299 R. sylvestris submerged 0.27 >More info 0.54 >More info R. sylvestris air Original data GEO bulk
300 ahg2-1sid2-2 0.27 >More info 0.54 >More info WT (Col) control Original data GEO bulk
301 shoot-10 μM DEX- 24hr 0.30 >More info 0.51 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
302 abi1 hypocotyl 0.24 >More info 0.56 >More info Ler hypocotyl hypocotyl Original data GEO bulk
303 root - 04% oxygen - 2h -0.05 >More info 0.85 >More info root - 21% oxygen - 2h Original data GEO bulk
304 wrky33 Bc inoculation 14h 0.50 >More info 0.29 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
305 Tsu-1 -Fe 48h 0.55 >More info 0.24 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
306 Tsu -Fe 48h Roots 0.55 >More info 0.24 >More info Tsu +Fe 24h Roots Original data GEO bulk
307 GST 4 h (leaf) 0.50 >More info 0.29 >More info Mock 4 h (leaf) Original data Elicitor treatments
308 Whole root - low pH 1H 0.20 >More info 0.59 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
309 35S:RPS4 eds1-2 2h -0.28 >More info -0.51 >More info 35S:RPS4 2h leaves Original data
310 JA 0.28 >More info 0.50 >More info Col-0 mock Whole seedling Original data GEO bulk
311 nia1nia2noa1-2 0.50 >More info 0.27 >More info Col-0 whole seedlings Original data GEO bulk
312 bri1-116 0.04 >More info 0.73 >More info Col seedling Original data GEO bulk
313 3x(p) 0.22 >More info 0.55 >More info 2x two week old seedlings Original data
314 Red/FR Light45min -0.03 >More info 0.79 >More info FarRed Light 45min Original data Light treatments
315 sfr3 control 0.25 >More info 0.50 >More info WT control All aerial tissue Original data GEO bulk
316 HS 0.24 >More info 0.50 >More info noneHS Original data GEO bulk
317 Cs root 0.03 >More info -0.76 >More info control root Original data GEO bulk
318 Infected pft1 leaf 0.21 >More info 0.51 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
319 seed germinating in countinuous light 24h SL 0.04 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
320 Blue Light 45 min -0.14 >More info -0.57 >More info White Light 45min Original data Light treatments
321 estradiole-induced ANAC059 -0.17 >More info -0.53 >More info transgenic (empty vector inducible system) Original data GEO bulk
322 R. amphibia submerged 0.19 >More info 0.51 >More info R. amphibia air Original data GEO bulk
323 amiRAP aerobic -0.15 >More info -0.54 >More info WT aerobic aerobic Original data GEO bulk
324 IAA7mII over-expressor IAA Treated 0.00 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
325 msh1 recA3 heat shock 0.16 >More info 0.52 >More info WT heat shock above-ground parts Original data GEO bulk
326 root - 01% oxygen - 30min 0.02 >More info 0.65 >More info root - 21% oxygen - 30min Original data GEO bulk
327 WT heat shock 0.11 >More info 0.56 >More info WT untreated above-ground parts Original data GEO bulk
328 35S:PCO1 hypoxia -0.17 >More info -0.50 >More info WT hypoxia whole rosette Original data
329 opr3 JA 0.5 h 0.10 >More info 0.56 >More info opr3 0 h Original data GEO bulk
330 AtMYB30-ox T0 -0.13 >More info -0.53 >More info WT T0 Original data GEO bulk
331 Aerobic e1 ate2 0.01 >More info 0.64 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
332 WT NAA 1h 0.55 >More info 0.09 >More info WT 0h Leaf tissue Original data GEO bulk
333 3m.KCl 0.50 >More info 0.14 >More info To. KCl 14 day old Roots Original data GEO bulk
334 ptpks2 -0.03 >More info -0.61 >More info Col-WT leaves Original data GEO bulk
335 Leaf wounded 0.14 >More info 0.50 >More info Leaf control vegetative leaf Original data GEO bulk
336 Shoot apex inflorescence (after bolting) -0.05 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
337 Dry pre-dawn -0.06 >More info -0.53 >More info Wet pre-dawn water-limited whole rosette Original data GEO bulk
338 sfr6 cold 0.06 >More info 0.53 >More info WT cold All aerial tissue Original data GEO bulk
339 triploid female excess 0.02 >More info -0.61 >More info tetraploid Original data GEO bulk
340 light-hs 0.09 >More info 0.50 >More info light-control seedling Original data
341 SA Treated 0.50 >More info 0.08 >More info Water Original data GEO bulk
342 root - 04% oxygen - 30min -0.12 >More info 0.70 >More info root - 21% oxygen - 30min Original data GEO bulk
343 CLO 4mM 0.54 >More info 0.03 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
344 Col-0 24hpi A. brassicicola 0.55 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
345 Aerobic prt6 0.05 >More info 0.52 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
346 CCA1-ox 6am non-polysomal 0.06 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
347 Got7 UV 0.04 >More info 0.51 >More info Got7 mock UV seedling Original data
348 HairpinZ 4 h (leaf) 0.57 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
349 seedling 3h after HZE WT 0.50 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
350 penta MeJA 1h 0.52 >More info -0.01 >More info Laer MeJA 1h leaf discs Original data GEO bulk
351 QC pSCR 3h BL -0.00 >More info 0.51 >More info QC pSCR 0h BL brassinosteroid root Original data
352 root - 08% oxygen - 2h -0.16 >More info 0.66 >More info root - 21% oxygen - 2h Original data GEO bulk
353 root - 08% oxygen - 30min -0.22 >More info 0.63 >More info root - 21% oxygen - 30min Original data GEO bulk
354 ara1/2mut -0.11 >More info 0.50 >More info Col-3 Original data GEO bulk
355 Col PSTDC3000 24h 0.50 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
356 4d red light grown hmr-22 seedlings 0.55 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
357 0h hml 0.24 >More info -0.53 >More info 0h wt Original data
358 WT roots - Fe 0.55 >More info -0.28 >More info WT roots + Fe Roots Original data GEO bulk