4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on root epidermis and lateral root cap pH4.6
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "root epidermis and lateral root cap pH4.6"  Help Download transcriptome of top 30
Score Experiment Correlation from
root epidermis and lateral root cap pH4.6		 Correlation to
root epidermis and lateral root cap pH4.6		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root epidermis and lateral root cap pH4.6 1.00 >More info 1.00 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
2 root stele pH4.6 0.80 >More info 0.80 >More info root stele pH5.7 Original data GEO bulk
3 root cortex pH4.6 0.76 >More info 0.77 >More info root cortex pH5.7 Original data GEO bulk
4 root cells epidermis 140mM NaCl 3 hours 0.68 >More info 0.69 >More info root cells epidermis standard 1 hour root cells epidermis Original data
5 TNT-seedlings 0.56 >More info 0.79 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
6 root longitudinal zone-3 pH 4.6 0.66 >More info 0.69 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
7 Whole root - low pH 12H 0.67 >More info 0.67 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
8 root endodermis and quiescent center pH4.6 0.64 >More info 0.69 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
9 root cells epidermis 140mM NaCl 48 hours 0.67 >More info 0.66 >More info root cells epidermis standard 1 hour root cells epidermis Original data
10 root cells endodermis 140mM NaCl 48 hours 0.68 >More info 0.59 >More info root cells endodermis standard 1 hour root cells endodermis Original data
11 root epidermis and lateral root cap -S 0.63 >More info 0.64 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
12 root columella root cap pH4.6 0.67 >More info 0.59 >More info root columella root cap pH5.7 Original data GEO bulk
13 root cells epidermis 140mM NaCl 8 hours 0.61 >More info 0.64 >More info root cells epidermis standard 1 hour root cells epidermis Original data
14 root cells epidermis 140mM NaCl 20 hours 0.64 >More info 0.61 >More info root cells epidermis standard 1 hour root cells epidermis Original data
15 Whole root - low pH 24H 0.61 >More info 0.63 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
16 root cells endodermis 140mM NaCl 3 hours 0.67 >More info 0.57 >More info root cells endodermis standard 1 hour root cells endodermis Original data
17 Col-0 low oxygen 0.65 >More info 0.59 >More info Col-0 control low oxygen root Original data GEO bulk
18 Chemically 0.49 >More info 0.75 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
19 bbx24 in Simulated Shade -0.61 >More info -0.61 >More info WT in simulated shade shade seedling Original data
20 root cells stele 140mM NaCl 3 hours 0.67 >More info 0.54 >More info root cells stele standard 1 hour root cells stele Original data
21 root cells epidermis 140mM NaCl 32 hours 0.56 >More info 0.64 >More info root cells epidermis standard 1 hour root cells epidermis Original data
22 Root -Cs 0.61 >More info 0.59 >More info Control-root Original data GEO bulk
23 root cells cortex 140mM NaCl 3 hours 0.67 >More info 0.52 >More info root cells cortex standard 1 hour root cells cortex Original data
24 root Dosed gold 0.55 >More info 0.63 >More info root No gold .125 mM gold 24 h roots Original data
25 0.125 mM gold 24 h 0.55 >More info 0.63 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
26 cdpk6-yfp 0.54 >More info 0.63 >More info Kan seedlings Original data GEO bulk
27 ahg2-1sid2-2 0.53 >More info 0.63 >More info WT (Col) control Original data GEO bulk
28 root cells stele 140mM NaCl 8 hours 0.64 >More info 0.51 >More info root cells stele standard 1 hour root cells stele Original data
29 SA 0.62 >More info 0.53 >More info WT mock Whole seedling Original data GEO bulk
30 root cells endodermis 140mM NaCl 8 hours 0.64 >More info 0.51 >More info root cells endodermis standard 1 hour root cells endodermis Original data
31 columella auxin 0.59 >More info 0.55 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
32 CeO2 germinant -0.43 >More info -0.71 >More info Millipore Water germinant CeO2 seedling Original data
33 R. solani AG8 0.58 >More info 0.55 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
34 Shoot -Cs 0.50 >More info 0.62 >More info Control-shoot Original data GEO bulk
35 whole roots -Fe 72 hour 0.59 >More info 0.52 >More info whole roots standard Original data GEO bulk
36 hira-root -0.50 >More info -0.61 >More info WT-root root Original data
37 24h +Pi -0.59 >More info -0.52 >More info 24h -Pi root Original data GEO bulk
38 Fe starvation 72 h 0.59 >More info 0.52 >More info Control Original data GEO bulk
39 root cells stele 140mM NaCl 32 hours 0.62 >More info 0.48 >More info root cells stele standard 1 hour root cells stele Original data
40 root cells endodermis 140mM NaCl 20 hours 0.59 >More info 0.51 >More info root cells endodermis standard 1 hour root cells endodermis Original data
41 root cells cortex 140mM NaCl 8 hours 0.57 >More info 0.53 >More info root cells cortex standard 1 hour root cells cortex Original data
42 root cells endodermis 140mM NaCl 32 hours 0.60 >More info 0.50 >More info root cells endodermis standard 1 hour root cells endodermis Original data
43 AgNO3 3 h 0.37 >More info 0.73 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
44 root cells stele 140mM NaCl 48 hours 0.61 >More info 0.48 >More info root cells stele standard 1 hour root cells stele Original data
45 Tsu -Fe 24h Roots 0.61 >More info 0.48 >More info Tsu +Fe 24h Roots Original data GEO bulk
46 Tsu-1 -Fe 24h 0.61 >More info 0.48 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
47 root cells cortex 140mM NaCl 32 hours 0.56 >More info 0.52 >More info root cells cortex standard 1 hour root cells cortex Original data
48 whole roots -Fe 48 hour 0.59 >More info 0.49 >More info whole roots standard Original data GEO bulk
49 epidermis auxin 0.57 >More info 0.50 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
50 35S::PI ap3-3 35S::AP-GR +DEX 0.53 >More info 0.53 >More info 0hr DEX Original data GEO bulk
51 root cells epidermis 140mM NaCl 1 hour 0.59 >More info 0.47 >More info root cells epidermis standard 1 hour root cells epidermis Original data
52 ani1 T16 -0.44 >More info -0.62 >More info WT T16 root tissue Original data GEO bulk
53 root cells cortex 140mM NaCl 20 hours 0.55 >More info 0.50 >More info root cells cortex standard 1 hour root cells cortex Original data
54 IAA/inhibitor B Treated 0.50 >More info 0.55 >More info IAA Treated Original data GEO bulk
55 root cells cortex 140mM NaCl 48 hours 0.60 >More info 0.45 >More info root cells cortex standard 1 hour root cells cortex Original data
56 5-Triiodobenzoic acid3 h 0.45 >More info 0.59 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
57 Mutant axr3-1 (IAA) 0.33 >More info 0.71 >More info Col (IAA) Original data GEO bulk
58 Phytoprostane A1 4 h 0.44 >More info 0.60 >More info Col-0 Original data GEO bulk
59 oas-a1.1 Cd 18h 0.52 >More info 0.51 >More info Cd 18h root Root Original data GEO bulk
60 root cells cortex 140mM NaCl 1 hour 0.55 >More info 0.48 >More info root cells cortex standard 1 hour root cells cortex Original data
61 Sulfometuron EC50 0.64 >More info 0.39 >More info Carrier Original data GEO bulk
62 upb1-1 elongation zone -0.39 >More info -0.64 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
63 line J1551-5 days control + 2 days salt s 0.48 >More info 0.55 >More info line J1551-7 days-control Original data
64 Imidazolinone EC50 0.55 >More info 0.47 >More info Carrier (Imidazolinone) Original data GEO bulk
65 inhibitor B Treated 0.55 >More info 0.47 >More info Negative Control Original data GEO bulk
66 nia1nia2noa1-2 0.64 >More info 0.38 >More info Col-0 whole seedlings Original data GEO bulk
67 Mutant axr3-1 0.40 >More info 0.62 >More info Col Original data GEO bulk
68 toc1-1-73hr 0.45 >More info 0.57 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
69 Cocultivation 8 hrs root 0.47 >More info 0.55 >More info Mock cocultivation 8 hrs root Root Original data
70 Mutant arf2-6 (IAA) 0.47 >More info 0.54 >More info Col (IAA) Original data GEO bulk
71 msh1 recA3 untreated 0.42 >More info 0.59 >More info WT untreated above-ground parts Original data GEO bulk
72 Norflurazon 0.51 >More info 0.49 >More info Col-0 Original data GEO bulk
73 ahg2-1 0.50 >More info 0.50 >More info WT (Col) control Original data GEO bulk
74 Starch sheath 2 days NAA 0.50 >More info 0.50 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
75 Norflurazon 0.51 >More info 0.49 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
76 cop1 Seedling BL 0.53 >More info 0.46 >More info WT Seedling BL Original data GEO bulk
77 Primisulfuron EC50 0.59 >More info 0.39 >More info Carrier (primisulfuron) Original data GEO bulk
78 root cells stele 140mM NaCl 20 hours 0.52 >More info 0.46 >More info root cells stele standard 1 hour root cells stele Original data
79 root cells endodermis 140mM NaCl 1 hour 0.54 >More info 0.44 >More info root cells endodermis standard 1 hour root cells endodermis Original data
80 pericycle auxin 0.57 >More info 0.40 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
81 Whole root - S 48H 0.39 >More info 0.58 >More info Whole root - S 0H Original data GEO bulk
82 UV 0.52 >More info 0.44 >More info WT aerial region Original data GEO bulk
83 Triazolopyrimidine EC50 0.58 >More info 0.38 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
84 red illumination +lincomycin 0.35 >More info 0.61 >More info red illumination -lincomycin Original data GEO bulk
85 Nicotinamide-61hr 0.52 >More info 0.43 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
86 root cells stele 140mM NaCl 1 hour 0.54 >More info 0.40 >More info root cells stele standard 1 hour root cells stele Original data
87 aux1 mutant roots air -0.56 >More info -0.38 >More info roots IAA Original data GEO bulk
88 toc1-1-85hr 0.39 >More info 0.55 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
89 Whole root - low pH 3H 0.39 >More info 0.55 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
90 seed germinating in countinuous light 24h SL 0.27 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
91 Nicotinamide-81hr 0.51 >More info 0.43 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
92 Whole root - S 24H 0.41 >More info 0.53 >More info Whole root - S 0H Original data GEO bulk
93 Nicotinamide-49hr 0.54 >More info 0.39 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
94 Chitosan 3h Treatment 0.40 >More info 0.53 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
95 csn5 (csn5a-2 csn5b) dark 0.51 >More info 0.42 >More info WT dark Original data GEO bulk
96 phr1 Shoot-Pi 0.58 >More info 0.35 >More info WT Root-Pi shoots Original data GEO bulk
97 toc1-1-81hr 0.36 >More info 0.57 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
98 Col-0 V. longisporum-inoculated 48 hpi 0.31 >More info 0.62 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
99 Shoot apex inflorescence (after bolting) 0.27 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
100 WT 30μM arsenate 8 hours. 0.50 >More info 0.42 >More info WT control (not supplemented). Original data
101 Glyphosate EC50 0.42 >More info 0.50 >More info Carrier (Glyphosate) Original data GEO bulk
102 toc1-1-53hr 0.38 >More info 0.53 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
103 1h +Pi -0.38 >More info -0.53 >More info 1h -Pi root Original data GEO bulk
104 bri1-116 0.18 >More info 0.73 >More info Col seedling Original data GEO bulk
105 Inflorescences Trp1 0.34 >More info 0.56 >More info Inflorescences ler inflorescences Original data GEO bulk
106 Leaf GLU1-KO 0.55 >More info 0.34 >More info Leaf Col(0) rosette leaves Original data GEO bulk
107 csn4-1 mutant 0.51 >More info 0.38 >More info WT dark Original data GEO bulk
108 dicamba 0.51 >More info 0.38 >More info WT mock whole seedling Original data GEO bulk
109 8hr-pH4.5 0.28 >More info 0.61 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
110 roots IAA 0.51 >More info 0.37 >More info roots mock Original data GEO bulk
111 Heat shock optimum 0.23 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
112 triplod male excess 0.35 >More info 0.53 >More info tetraploid Original data GEO bulk
113 plant (Col-0) 4h phytoprostane A1 0.31 >More info 0.57 >More info plant (tga2-5-6) 4h control Original data GEO bulk
114 shoots bhlh100/101 0uM Fe 0.62 >More info 0.25 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
115 prors1-2 leaves 0.35 >More info 0.52 >More info Col-0 leaves leaves Original data
116 cop1 Seedling BL+ABA 0.52 >More info 0.34 >More info WT Seedling BL+ABA Original data GEO bulk
117 AtLysM RLK1 mutant water 0.50 >More info 0.36 >More info WT water Original data GEO bulk
118 Nicotinamide-93hr 0.59 >More info 0.27 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
119 Differentiation 12h 0.51 >More info 0.35 >More info Differentiation 0h leaves Original data
120 line J2731-5 days control + 2 days salt s 0.35 >More info 0.51 >More info line J2731-7 days-control Original data
121 protoplasted roots pH4.6 0.52 >More info 0.33 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
122 Whole root - S 3H 0.51 >More info 0.34 >More info Whole root - S 0H Original data GEO bulk
123 GO5; 8h switch to ambient CO2 concentrations; 0.55 >More info 0.30 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
124 roottip hypoxia total 0.33 >More info 0.51 >More info roottip control total Original data GEO bulk
125 6h +Pi -0.32 >More info -0.52 >More info 6h -Pi root Original data GEO bulk
126 root longitudinal zone-2 pH 4.6 0.28 >More info 0.56 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
127 tt4 UV -0.16 >More info -0.67 >More info UV aerial region Original data GEO bulk
128 afb3-1 2h KNO3 0.32 >More info 0.51 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
129 phosphate-starved -0.22 >More info -0.61 >More info control shoot tissue Original data GEO bulk
130 Cs root -0.31 >More info -0.51 >More info control root Original data GEO bulk
131 sta1 0.59 >More info 0.23 >More info WT Original data GEO bulk
132 Ws 100mM NaCl 0.51 >More info 0.30 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
133 Ws leaf 100mM NaCl 0.51 >More info 0.30 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
134 RGA-GR-DEX 0.27 >More info 0.54 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
135 ice1 6H Cold 0.58 >More info 0.23 >More info WT 6H Cold Original data GEO bulk
136 aox1a:rpoTmp untreated 0.50 >More info 0.30 >More info WT(Col0) untreated (control aox1a:rpoTmp) leaf Original data
137 M6PR transgenic leaf 100mM NaCl -0.53 >More info -0.27 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
138 whole roots -Fe 6 hour 0.30 >More info 0.50 >More info whole roots standard Original data GEO bulk
139 Col leaf 100mM NaCl 0.51 >More info 0.27 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
140 Col leaf 100mM NaCl 0.51 >More info 0.27 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
141 Selenate (root) 0.52 >More info 0.26 >More info Ws (root) Original data GEO bulk
142 Col 100mM NaCl 0.51 >More info 0.27 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
143 Root Selenate 0.52 >More info 0.26 >More info Root control 40 micromolar selenate Root Original data GEO bulk
144 elevated CO2 high Mg root -0.53 >More info -0.25 >More info atmospheric CO2 high Mg root Root Original data
145 9m.KCl 0.50 >More info 0.28 >More info To. KCl 14 day old Roots Original data GEO bulk
146 gun1-1 -lincomycin -0.27 >More info -0.50 >More info Col-0 -lincomycin Original data GEO bulk
147 Octopus mutant DYG25 0.51 >More info 0.25 >More info WS Original data GEO bulk
148 35S::ZAT12 0.50 >More info 0.25 >More info gl1 Original data GEO bulk
149 Col BTH 0.08 >More info 0.67 >More info Col rosettes Original data GEO bulk
150 R. solani AG2-1 0.24 >More info 0.50 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
151 ice1 control 0.52 >More info 0.21 >More info WT control Original data GEO bulk
152 24h light (+Lincomycin) 0.52 >More info 0.20 >More info 24h light (-Lincomycin) seedlings Original data GEO bulk
153 Whole root - low pH 1H 0.07 >More info 0.65 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
154 Total RNA 35S:HF-RPL18 0.10 >More info 0.62 >More info Total RNA csp1 12h non-stress rosettes Original data GEO bulk
155 Genotoxic Stress 3 h (root) -0.52 >More info -0.16 >More info Stress mock 3 h (root) Original data Stress treatments
156 siliques AtHb1 control 0.12 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
157 Propiconazole 3 h 0.52 >More info 0.10 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
158 Leafminer damaged seedlings 0.05 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
159 Col-0 24hpi A. brassicicola 0.59 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
160 IAA7mII over-expressor IAA Treated -0.09 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
161 Laer pretreat GA Flg22 1h -0.11 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
162 SA Treated 0.51 >More info 0.08 >More info Water Original data GEO bulk
163 atmospheric CO2 low Mg shoot 0.50 >More info 0.09 >More info atmospheric CO2 normal Mg shoot Shoot Original data
164 Col0-PsmES4326-24hpi -0.06 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
165 MYB46-GR DEX -0.01 >More info -0.53 >More info MYB46-GR mock Young rosette leaves (5-7th) Original data GEO bulk
166 SA 4mM 0.53 >More info 0.00 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
167 CCA1-ox 6am non-polysomal -0.08 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
168 M6PR transgenic 100mM NaCl -0.54 >More info 0.16 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk