4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Whole root - low pH 24H
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Whole root - low pH 24H		 Correlation to
Whole root - low pH 24H		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Whole root - low pH 24H 1.00 >More info 1.00 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
2 Whole root - low pH 12H 0.89 >More info 0.90 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
3 Whole root - low pH 6H 0.76 >More info 0.77 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
4 whole roots -Fe 72 hour 0.77 >More info 0.72 >More info whole roots standard Original data GEO bulk
5 Fe starvation 72 h 0.77 >More info 0.72 >More info Control Original data GEO bulk
6 8hr-pH4.5 0.73 >More info 0.73 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
7 whole roots -Fe 48 hour 0.74 >More info 0.72 >More info whole roots standard Original data GEO bulk
8 Whole root - low pH 3H 0.63 >More info 0.77 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
9 root longitudinal zone-4 pH 4.6 0.62 >More info 0.77 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
10 hira-root -0.67 >More info -0.70 >More info WT-root root Original data
11 Whole root - S 3H 0.59 >More info 0.78 >More info Whole root - S 0H Original data GEO bulk
12 SA 0.70 >More info 0.66 >More info WT mock Whole seedling Original data GEO bulk
13 root longitudinal zone-3 pH 4.6 0.62 >More info 0.72 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
14 6h +Pi -0.65 >More info -0.69 >More info 6h -Pi root Original data GEO bulk
15 COL-0-Fe--root 0.70 >More info 0.60 >More info COL-0-Ctrl--root root Original data
16 9m.KCl 0.59 >More info 0.70 >More info To. KCl 14 day old Roots Original data GEO bulk
17 Tsu -Fe 24h Roots 0.62 >More info 0.66 >More info Tsu +Fe 24h Roots Original data GEO bulk
18 Tsu-1 -Fe 24h 0.62 >More info 0.66 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
19 Cocultivation 8 hrs root 0.68 >More info 0.60 >More info Mock cocultivation 8 hrs root Root Original data
20 AgNO3 3 h 0.53 >More info 0.74 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
21 5-Triiodobenzoic acid3 h 0.64 >More info 0.63 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
22 root stele pH4.6 0.57 >More info 0.69 >More info root stele pH5.7 Original data GEO bulk
23 root epidermis and lateral root cap pH4.6 0.63 >More info 0.61 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
24 TNT-seedlings 0.51 >More info 0.72 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
25 ahg2-1sid2-2 0.47 >More info 0.74 >More info WT (Col) control Original data GEO bulk
26 nia1nia2 0.69 >More info 0.51 >More info Col-0 whole seedlings Original data GEO bulk
27 Chemically 0.44 >More info 0.75 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
28 root endodermis and quiescent center pH4.6 0.53 >More info 0.64 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
29 R. solani AG8 0.60 >More info 0.57 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
30 Imidazolinone EC50 0.63 >More info 0.53 >More info Carrier (Imidazolinone) Original data GEO bulk
31 root Dosed gold 0.63 >More info 0.53 >More info root No gold .125 mM gold 24 h roots Original data
32 0.125 mM gold 24 h 0.63 >More info 0.53 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
33 SCL3 OE -0.61 >More info -0.54 >More info Col-0 whole root Original data GEO bulk
34 root longitudinal zone-2 pH 4.6 0.45 >More info 0.68 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
35 root cortex pH4.6 0.54 >More info 0.59 >More info root cortex pH5.7 Original data GEO bulk
36 roots IAA 0.49 >More info 0.64 >More info roots mock Original data GEO bulk
37 bZIP1ko mutant N+Light- 0.53 >More info 0.59 >More info WT-sib N+Light- whole plant Original data GEO bulk
38 WT roots - Fe 0.54 >More info 0.57 >More info WT roots + Fe Roots Original data GEO bulk
39 Laer pretreat GA Flg22 1h 0.40 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
40 R. solani AG2-1 0.60 >More info 0.50 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
41 nia1nia2noa1-2 0.59 >More info 0.51 >More info Col-0 whole seedlings Original data GEO bulk
42 Fenclorim 24hr 0.63 >More info 0.46 >More info Acetone 24hr root Original data GEO bulk
43 Bur-0-3h IAA 0.55 >More info 0.54 >More info Bur-0h IAA whole plant Original data GEO bulk
44 Shoot -Cs 0.46 >More info 0.63 >More info Control-shoot Original data GEO bulk
45 24h +Pi -0.61 >More info -0.48 >More info 24h -Pi root Original data GEO bulk
46 Oxidative Stress 3 h (root) -0.57 >More info -0.51 >More info Stress mock 3 h (root) Original data Stress treatments
47 root cells endodermis 140mM NaCl 3 hours 0.60 >More info 0.48 >More info root cells endodermis standard 1 hour root cells endodermis Original data
48 whole roots 140 mM NaCl 1 hour 0.63 >More info 0.45 >More info whole roots standard Original data GEO bulk
49 oas-a1.1 Cd 18h 0.60 >More info 0.48 >More info Cd 18h root Root Original data GEO bulk
50 dicamba 0.54 >More info 0.54 >More info WT mock whole seedling Original data GEO bulk
51 Col0-PsmES4326-24hpi 0.47 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
52 Phytoprostane A1 4 h 0.54 >More info 0.53 >More info Col-0 Original data GEO bulk
53 Col -Fe 0.57 >More info 0.50 >More info Col-es root Original data GEO bulk
54 BLM 0.57 >More info 0.50 >More info CK BLM seedling Original data
55 BLM+INA 0.60 >More info 0.47 >More info CK BLM and INA seedling Original data
56 MG132 3 h 0.48 >More info 0.59 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
57 bak1-3 +Pep2 10h 0.63 >More info 0.43 >More info WT +Pep2 10h Pep2 Original data GEO bulk
58 WT in -N 0.54 >More info 0.52 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
59 Fenclorim 4hr 0.59 >More info 0.47 >More info Acetone 4hr root Original data GEO bulk
60 Triazolopyrimidine EC50 0.56 >More info 0.50 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
61 seedlings-week-old RECA1-overexpressing
transgenic		 0.55 >More info 0.51 >More info seedlings-week-old Col-0 seedlings Original data
62 Primisulfuron EC50 0.55 >More info 0.50 >More info Carrier (primisulfuron) Original data GEO bulk
63 AtLysM RLK1 mutant water 0.60 >More info 0.45 >More info WT water Original data GEO bulk
64 root longitudinal zone-1 pH 4.6 0.52 >More info 0.53 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
65 Salicylic Acid 3 h 0.46 >More info 0.59 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
66 Root -Cs 0.56 >More info 0.48 >More info Control-root Original data GEO bulk
67 LTN008-2 aza-dc 0.60 >More info 0.44 >More info LTN012-2 Mock Original data
68 K starvation (root) 0.56 >More info 0.48 >More info Ws (root) Original data GEO bulk
69 OXUPB1-2 elongation zone 0.51 >More info 0.53 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
70 columella auxin 0.45 >More info 0.59 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
71 sta1 0.52 >More info 0.51 >More info WT Original data GEO bulk
72 Root -K 0.56 >More info 0.47 >More info Control-root Original data GEO bulk
73 Sulfometuron EC50 0.53 >More info 0.49 >More info Carrier Original data GEO bulk
74 root columella root cap pH4.6 0.45 >More info 0.57 >More info root columella root cap pH5.7 Original data GEO bulk
75 35S::PI ap3-3 35S::AP-GR +DEX 0.43 >More info 0.59 >More info 0hr DEX Original data GEO bulk
76 cdkf:1-2 0.57 >More info 0.44 >More info wt seedling young seedlings Original data GEO bulk
77 plant (tga2-5-6) 4h phytoprostane A1 0.54 >More info 0.47 >More info plant (tga2-5-6) 4h control Original data GEO bulk
78 cdpk6-yfp 0.48 >More info 0.53 >More info Kan seedlings Original data GEO bulk
79 bbx24 in Simulated Shade -0.57 >More info -0.43 >More info WT in simulated shade shade seedling Original data
80 Differentiation 12h 0.52 >More info 0.48 >More info Differentiation 0h leaves Original data
81 csn5 (csn5a-2 csn5b) light 0.62 >More info 0.38 >More info WT light Original data GEO bulk
82 Whole root - S 12H 0.38 >More info 0.62 >More info Whole root - S 0H Original data GEO bulk
83 OXUPB1-2 meristematic zone 0.54 >More info 0.45 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
84 Mutant axr3-1 0.40 >More info 0.59 >More info Col Original data GEO bulk
85 GO5; 8h switch to ambient CO2 concentrations; 0.46 >More info 0.53 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
86 toc1-1-85hr 0.39 >More info 0.59 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
87 Seedling KUA1-IOX est 0.37 >More info 0.61 >More info Seedling KUA1-IOX mock Original data
88 Whole root - low pH 1H 0.23 >More info 0.74 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
89 CDB1-Knockout -0.35 >More info -0.62 >More info WT Original data GEO bulk
90 IAA 0h -0.55 >More info -0.41 >More info control 0h root Original data GEO bulk
91 Col-0 2h NAA 0.41 >More info 0.55 >More info Col-0 6h MOCK Original data GEO bulk
92 root cells stele 140mM NaCl 3 hours 0.56 >More info 0.39 >More info root cells stele standard 1 hour root cells stele Original data
93 Col BTH 0.28 >More info 0.67 >More info Col rosettes Original data GEO bulk
94 ahg2-1 0.36 >More info 0.59 >More info WT (Col) control Original data GEO bulk
95 epidermis auxin 0.42 >More info 0.53 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
96 pepr1-1 Pepr2-3 +Pep2 10h -0.58 >More info -0.36 >More info WT +Pep2 10h Pep2 Original data GEO bulk
97 root cells endodermis 140mM NaCl 8 hours 0.53 >More info 0.41 >More info root cells endodermis standard 1 hour root cells endodermis Original data
98 DFPM 0.60 >More info 0.34 >More info control Original data GEO bulk
99 WT chitooctaose 0.50 >More info 0.44 >More info WT water Original data GEO bulk
100 Whole root - S 48H 0.40 >More info 0.53 >More info Whole root - S 0H Original data GEO bulk
101 Ibuprofen 3 h 0.43 >More info 0.50 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
102 Fei-0-3h IAA 0.43 >More info 0.50 >More info Fei-0-0h IAA whole plant Original data GEO bulk
103 Whole root - S 24H 0.41 >More info 0.52 >More info Whole root - S 0H Original data GEO bulk
104 seedlings +5AC 0.53 >More info 0.39 >More info control seedlings 10-day old whole seedling Original data GEO bulk
105 Bur-0-1h IAA 0.40 >More info 0.52 >More info Bur-0h IAA whole plant Original data GEO bulk
106 toc1-1-81hr 0.40 >More info 0.52 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
107 efr-1 +elf18 10h -0.51 >More info -0.41 >More info WT +elf18 10h elf18 Original data GEO bulk
108 gapcp1gapcp2 0.56 >More info 0.35 >More info WT Original data GEO bulk
109 Mutant nph4-1_arf19-1 0.56 >More info 0.35 >More info Col Original data GEO bulk
110 CMP 24hr 0.52 >More info 0.39 >More info Acetone 24hr root Original data GEO bulk
111 B.cinerea 18 h infection 0.51 >More info 0.40 >More info Mock 18 h Original data Botrytis cinerea infection
112 Botrytis cinerea 18h 0.51 >More info 0.40 >More info control 18h Original data GEO bulk
113 roottip control pWOL 0.36 >More info 0.55 >More info roottip control total control roottip Original data GEO bulk
114 oas-a1.1 root 0.40 >More info 0.51 >More info WT-Untreated Root Original data GEO bulk
115 Col upon hypoxia 6 hrs 0.39 >More info 0.52 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
116 root longitudinal zone-2 low sulfur -0.37 >More info -0.54 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
117 WT +elf18 10h 0.57 >More info 0.34 >More info WT untreated elf18 Original data GEO bulk
118 sdg2 0.59 >More info 0.32 >More info wt seedling Original data GEO bulk
119 WT powdery mildew 0.58 >More info 0.33 >More info WT control inoculation with the powdery mildew pathogen Original data GEO bulk
120 Chitosan 3h Treatment 0.50 >More info 0.41 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
121 det2 light-dark -0.56 >More info -0.34 >More info det2 light light-dark Original data GEO bulk
122 9 hr Hypoxia 1 hr recovery Total RNA 0.39 >More info 0.51 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
123 CeO2 germinant -0.22 >More info -0.67 >More info Millipore Water germinant CeO2 seedling Original data
124 npr1-1 SA -0.52 >More info -0.36 >More info Col-0 SA complete seedling Original data
125 atmospheric CO2 high Mg root -0.52 >More info -0.36 >More info atmospheric CO2 normal Mg root Root Original data
126 root cells epidermis 140mM NaCl 3 hours 0.50 >More info 0.38 >More info root cells epidermis standard 1 hour root cells epidermis Original data
127 C24-1h IAA 0.37 >More info 0.51 >More info C24-0h IAA whole plant Original data GEO bulk
128 oligomycin 1 h 0.27 >More info 0.61 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
129 albino Ds13-2198-1 -0.54 >More info -0.33 >More info control Original data GEO bulk
130 smg5-2 0.54 >More info 0.33 >More info WT whole plant Original data GEO bulk
131 ABA DFPM 0.61 >More info 0.26 >More info control Original data GEO bulk
132 csn3-1 light 0.57 >More info 0.30 >More info WT light Original data GEO bulk
133 whole roots 140 mM NaCl 30 minutes 0.57 >More info 0.30 >More info whole roots standard Original data GEO bulk
134 Col ozone 2d 0.54 >More info 0.32 >More info Col clean-air 2d ozone Original data GEO bulk
135 2h KNO3 Whole root -0.33 >More info -0.53 >More info 2h KCl control Whole root Whole root Original data GEO bulk
136 SA 3h 0.26 >More info 0.60 >More info EtOH 3h 3hr Original data GEO bulk
137 Cor 24h 0.51 >More info 0.34 >More info Mock 24h Cor Original data GEO bulk
138 -Sulfate 2 h 0.30 >More info 0.55 >More info Mock 2 h (1500uM sulfate) Original data Response to sulfate limitation
139 Leafminer damaged seedlings 0.29 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
140 lht1 PstDC3000 48h 0.50 >More info 0.35 >More info PstDC3000 48h 48hr leaf Original data GEO bulk
141 BR 0.35 >More info 0.50 >More info WT-mock BR dark-grown seedlings Original data GEO bulk
142 24h volatiles Sm. R3089 -0.55 >More info -0.29 >More info 24h untreated whole seedling Original data GEO bulk
143 Col-0 low oxygen 0.34 >More info 0.50 >More info Col-0 control low oxygen root Original data GEO bulk
144 Col in Pi deficiency medium 0.29 >More info 0.54 >More info Col in control medium root Original data GEO bulk
145 Transgenic LEC2GR Seedling 1h Dex 0.29 >More info 0.54 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
146 atmyc2 Seedling BL 0.28 >More info 0.55 >More info WT Seedling BL Original data GEO bulk
147 Col-0 V. longisporum-inoculated 48 hpi 0.26 >More info 0.57 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
148 IAA 2h 0.23 >More info 0.59 >More info control 2h root Original data GEO bulk
149 ptpks2 0.29 >More info 0.52 >More info Col-WT leaves Original data GEO bulk
150 toc1-1-49hr 0.30 >More info 0.51 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
151 root cells endodermis 140mM NaCl 1 hour 0.53 >More info 0.27 >More info root cells endodermis standard 1 hour root cells endodermis Original data
152 abh1 -ABA 0.29 >More info 0.51 >More info Col-0 -ABA Original data GEO bulk
153 ubc13A -Fe -0.58 >More info -0.22 >More info Col -Fe root Original data GEO bulk
154 GA4 3 h (ga1 seed) 0.51 >More info 0.28 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
155 toc1-1-53hr 0.26 >More info 0.53 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
156 JA 0.51 >More info 0.27 >More info Col-0 mock Whole seedling Original data GEO bulk
157 Mutant axr3-1 (IAA) 0.15 >More info 0.63 >More info Col (IAA) Original data GEO bulk
158 WT-NOCO2 INFECTED 0.50 >More info 0.27 >More info WT-MOCK Original data GEO bulk
159 protoplasted roots pH4.6 0.51 >More info 0.25 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
160 6-trichlorophenoxyacetic acid 3 h 0.51 >More info 0.24 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
161 bak1-3 +Pep2 2h 0.24 >More info 0.51 >More info WT +Pep2 2h Pep2 Original data GEO bulk
162 root endodermis and quiescent center 40 mM NaCl 0.52 >More info 0.22 >More info root endodermis and quiescent center Original data GEO bulk
163 IAA7mII over-expressor IAA Treated 0.04 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
164 Dry pre-dawn 0.20 >More info 0.53 >More info Wet pre-dawn water-limited whole rosette Original data GEO bulk
165 amiR-tor induced 3d 0.19 >More info 0.53 >More info amiR-tor 3d C 3 days estradiol-treated seedlings Original data GEO bulk
166 WT +Pep2 10h 0.50 >More info 0.21 >More info WT untreated Pep2 Original data GEO bulk
167 siliques AtHb1 control 0.16 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
168 msh1 recA3 untreated 0.10 >More info 0.58 >More info WT untreated above-ground parts Original data GEO bulk
169 Heat shock optimum 0.02 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
170 cpctry 0.15 >More info 0.50 >More info Col Original data GEO bulk
171 ABA control 0.50 >More info 0.14 >More info No ABA control Original data GEO bulk
172 elf3-7-16ºC 0.12 >More info 0.51 >More info WT-16ºC Original data GEO bulk
173 GRX-overexpression seedlings IAA -0.04 >More info -0.55 >More info WT seedlings IAA Seedlings Original data GEO bulk
174 bri1-116 -0.15 >More info 0.73 >More info Col seedling Original data GEO bulk
175 Blue Light 4 h 0.50 >More info 0.06 >More info White Light 4 h Original data Light treatments
176 penta Alternaria 3dpi 0.50 >More info 0.06 >More info Laer Alternaria 3dpi leaf discs Original data GEO bulk
177 iron minus 24h 0.06 >More info 0.50 >More info iron +24h root Original data GEO bulk
178 Pst-DC3000(hrpA)-4hpi -0.06 >More info -0.50 >More info Pst-DC3000-4hpi Original data GEO bulk
179 sng1 -0.01 >More info 0.53 >More info WT aerial region Original data GEO bulk
180 akt1-1 -0.00 >More info 0.50 >More info Ws-2 Seedlings Original data GEO bulk
181 Blue Light 45 min 0.04 >More info -0.52 >More info White Light 45min Original data Light treatments
182 seed germinating in countinuous light 24h SL -0.24 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
183 CCA1-ox 6am non-polysomal -0.10 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
184 Shoot apex inflorescence (after bolting) -0.25 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
185 ein2 0.30 >More info -0.51 >More info Col-0 Leaves Original data GEO bulk