4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on amiRAP aerobic
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List of experiments correlated with "amiRAP aerobic"  Help Download transcriptome of top 30
Score Experiment Correlation from
amiRAP aerobic		 Correlation to
amiRAP aerobic		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 amiRAP aerobic 1.00 >More info 1.00 >More info WT aerobic aerobic Original data GEO bulk
2 HARAP aerobic 0.84 >More info 0.76 >More info WT aerobic aerobic Original data GEO bulk
3 dde2-2 9 hpi A. brassicicola -0.69 >More info -0.60 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
4 35S:CDO1 normoxia -0.53 >More info -0.71 >More info WT normoxia normoxia whole rosette Original data
5 high R/FR JA spray 0.53 >More info 0.68 >More info high R/FR mock spray high R/FR JA spray Original data GEO bulk
6 npr1 sni1 brca2a SA 0.62 >More info 0.58 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
7 bio4-1 mutant watered00µM biotin leaves 0.55 >More info 0.64 >More info bio4-1 mutant leaves leaves Original data GEO bulk
8 coi1-2 JA -0.56 >More info -0.63 >More info JA Whole seedling Original data GEO bulk
9 seedlings-week-old RECA1-overexpressing
transgenic		 -0.70 >More info -0.48 >More info seedlings-week-old Col-0 seedlings Original data
10 aba2 1% sucrose 12-day-old -0.48 >More info -0.70 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
11 oas-a1.1 Cd 18h -0.59 >More info -0.57 >More info Cd 18h root Root Original data GEO bulk
12 Cor hrpS 10h -0.56 >More info -0.58 >More info Mock 10h Cor hrpS Original data GEO bulk
13 CLO 4mM -0.67 >More info -0.46 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
14 coi1-2 -0.53 >More info -0.60 >More info Col-0 mock Whole seedling Original data GEO bulk
15 camta2/3 warm -0.54 >More info -0.59 >More info WT warm entire aerial part Original data GEO bulk
16 GST NPP1 4 h (leaf) -0.69 >More info -0.42 >More info Mock 4 h (leaf) Original data Elicitor treatments
17 E.orontii Infection 3 day -0.51 >More info -0.60 >More info Uninfection 3 day Original data Elicitor treatments
18 UV Stress 24 h (shoot) -0.60 >More info -0.51 >More info Stress mock 24 h (shoot) Original data Stress treatments
19 A. thaliana-A. lyrata hybrid 0.54 >More info 0.57 >More info A. thaliana mature leaves before flowering Original data GEO bulk
20 cpr5scv1 -0.65 >More info -0.45 >More info WT(COL) Original data GEO bulk
21 bri1-116 0.37 >More info 0.73 >More info Col seedling Original data GEO bulk
22 seedlings protease IV -0.64 >More info -0.45 >More info seedlings nontreated control whole seedling Original data
23 low CO2 + light -0.65 >More info -0.44 >More info normal CO2 + light Original data GEO bulk
24 AvrRpm1 2 h (leaf) -0.61 >More info -0.47 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
25 camta3-2 -0.52 >More info -0.56 >More info WT Original data GEO bulk
26 sid2-1 cold 0.66 >More info 0.42 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
27 WT chitooctaose -0.62 >More info -0.46 >More info WT water Original data GEO bulk
28 GST 4 h (leaf) -0.62 >More info -0.46 >More info Mock 4 h (leaf) Original data Elicitor treatments
29 epiF3 0.49 >More info 0.59 >More info WT Col-0 aerial part Original data
30 WT 2-4h Xanthomonas -0.61 >More info -0.45 >More info WT T0 Original data GEO bulk
31 camta1/3 warm -0.52 >More info -0.53 >More info WT warm entire aerial part Original data GEO bulk
32 P.p 2.5hai -0.53 >More info -0.52 >More info At-Control roots Original data GEO bulk
33 WT cold -0.63 >More info -0.42 >More info WT warm 3 week cold entire aerial part Original data GEO bulk
34 Mutant siz1-3 (Drought) -0.54 >More info -0.51 >More info Col-0 (Drought) Original data GEO bulk
35 Col-0 INA 6d -0.54 >More info -0.51 >More info Col-0 MOCK 6d Original data GEO bulk
36 siz1-3 drought -0.54 >More info -0.51 >More info Col-0 drought Original data GEO bulk
37 WT 3h -P -0.41 >More info -0.64 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
38 amiRAP hypoxic 0.45 >More info 0.60 >More info hypoxic hypoxia Original data GEO bulk
39 pepr1-1 Pepr2-3 +Pep2 10h 0.70 >More info 0.34 >More info WT +Pep2 10h Pep2 Original data GEO bulk
40 camta1/2/3 24h cold -0.60 >More info -0.44 >More info WT 24h cold 24h cold entire aerial part Original data GEO bulk
41 Col whole leaf 5dpi -0.63 >More info -0.41 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
42 Col ozone 3h -0.44 >More info -0.60 >More info Col clean-air 3h ozone Original data GEO bulk
43 seedling 6h after HZE WT -0.62 >More info -0.41 >More info seedling day 1 unirradiated WT 6h Original data
44 pepr1-1 Pepr2-3 +Pep2 2h 0.62 >More info 0.41 >More info WT +Pep2 2h Pep2 Original data GEO bulk
45 til1-1 22C -0.67 >More info -0.35 >More info Col-0 22C Original data GEO bulk
46 WT+chitooctaose -0.47 >More info -0.55 >More info WT+water chitooctaose seedlings Original data GEO bulk
47 35S:RPS4 eds1-2 2h 0.42 >More info 0.60 >More info 35S:RPS4 2h leaves Original data
48 camta1/2/3 warm -0.57 >More info -0.44 >More info WT warm entire aerial part Original data GEO bulk
49 35S:RPS4 eds1-2 8h 0.67 >More info 0.34 >More info 35S:RPS4 8h leaves Original data
50 4C 1h -0.33 >More info -0.68 >More info 4C 0h Original data GEO bulk
51 oligomycin 4 h -0.68 >More info -0.32 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
52 OE WRKY63.3 high light -0.54 >More info -0.46 >More info OE WRKY40.4 high light high light for 1h at 1000 μE m-2s-1 leaf Original data GEO bulk
53 bak1-3 +Pep2 2h -0.61 >More info -0.38 >More info WT +Pep2 2h Pep2 Original data GEO bulk
54 WT NAA 1h -0.48 >More info -0.51 >More info WT 0h Leaf tissue Original data GEO bulk
55 psae1-3 stn7-1 -0.62 >More info -0.36 >More info WS rosette leaves Original data GEO bulk
56 WT +elf18 10h -0.58 >More info -0.40 >More info WT untreated elf18 Original data GEO bulk
57 TNT-seedlings -0.54 >More info -0.44 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
58 JA 3h 0.22 >More info 0.76 >More info EtOH 3h 3hr Original data GEO bulk
59 Col-0 9 hpi A. brassicicola -0.64 >More info -0.33 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
60 -Sulfate 24 h -0.51 >More info -0.46 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
61 vtc2 mature somatic embryo -0.45 >More info -0.52 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
62 AZC -0.50 >More info -0.46 >More info noneHS Original data GEO bulk
63 PstDC3000 48h -0.26 >More info -0.70 >More info WT untreated 48hr leaf Original data GEO bulk
64 OsSAP11 expressing 0.55 >More info 0.40 >More info WT seedlings Original data GEO bulk
65 9 hr Hypoxia IP RNA -0.65 >More info -0.30 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
66 pad4-PsmES4326-24hpi 0.58 >More info 0.37 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
67 efr-1 +elf18 10h 0.57 >More info 0.38 >More info WT +elf18 10h elf18 Original data GEO bulk
68 Flagellin 4 h (leaf) -0.60 >More info -0.35 >More info Mock 4 h (leaf) Original data Elicitor treatments
69 glk1 glk2 GLK1-GR +DEX 24h 0.70 >More info 0.25 >More info glk1 glk2 GLK1-GR mock 24h dexamethasone whole seedlings Original data GEO bulk
70 ORS1 induced -0.56 >More info -0.38 >More info mock-induced rosette leaves Original data GEO bulk
71 msh1 variegation Col-0 -0.55 >More info -0.39 >More info WT Col-0 above ground part of plant Original data GEO bulk
72 irradiated leaf (WT 1d) -0.59 >More info -0.35 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
73 Methyl Jasmonate 3 h 0.24 >More info 0.70 >More info Mock 3 h Original data Basic hormone treatment of seedlings
74 Phaseolicola 2 h (leaf) -0.55 >More info -0.38 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
75 AgNO3 3 h -0.65 >More info -0.28 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
76 Cycloheximide 3 h -0.56 >More info -0.36 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
77 WT AntimycinA 3h -0.66 >More info -0.26 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
78 bak1-3 +Pep2 10h -0.63 >More info -0.29 >More info WT +Pep2 10h Pep2 Original data GEO bulk
79 WT-NOCO2 INFECTED -0.63 >More info -0.29 >More info WT-MOCK Original data GEO bulk
80 cpr5npr1svi1 -0.59 >More info -0.33 >More info WT(COL) Original data GEO bulk
81 CeO2 germinant 0.60 >More info 0.32 >More info Millipore Water germinant CeO2 seedling Original data
82 15m.KCl -0.58 >More info -0.34 >More info To. KCl 14 day old Roots Original data GEO bulk
83 AAF-OX -0.42 >More info -0.50 >More info Col-0 Rosette leaf Original data GEO bulk
84 WT +elf18 2h -0.56 >More info -0.35 >More info WT untreated elf18 Original data GEO bulk
85 ein2-1 9 hpi A. brassicicola -0.64 >More info -0.27 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
86 flu dark 8hours/30 minute light -0.38 >More info -0.53 >More info col dark 8hours/30 minute light Original data GEO bulk
87 4C 2h(SOIL) -0.38 >More info -0.53 >More info 4C 0h(SOIL) Original data GEO bulk
88 Full AC2 T1 0.61 >More info 0.30 >More info AC2 and AC2del control T1 one day post infusion with Agrobacterium containing full-length CaLCuV AC2 Arabidopsis rosette leaves Original data
89 Lipopolysaccaride4 h (leaf) -0.57 >More info -0.34 >More info Mock 4 h (leaf) Original data Elicitor treatments
90 rcf1-1 cold 24h -0.50 >More info -0.40 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
91 Roots Cd 0.64 >More info 0.26 >More info Roots control Cd Root Original data GEO bulk
92 2 hr Hypoxia Total RNA -0.62 >More info -0.28 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
93 cpr5 -0.54 >More info -0.36 >More info WT(COL) Original data GEO bulk
94 Col whole leaf 7dpi -0.51 >More info -0.39 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
95 CAX1/CAX3 mutant -0.62 >More info -0.28 >More info Col whole plant Original data GEO bulk
96 bHLH122 ox 0.52 >More info 0.38 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
97 cpr5 -0.55 >More info -0.35 >More info WT seedling Original data GEO bulk
98 Whole root - low pH 12H -0.54 >More info -0.36 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
99 S15-118 -0.38 >More info -0.52 >More info wt Original data GEO bulk
100 seedling 6h after HZE atm-1 -0.57 >More info -0.33 >More info seedling day 1 unirradiated atm-1 6h Original data
101 +1.6 mM Tween 20 1 h. -0.59 >More info -0.31 >More info +distilled water 1 h. Original data GEO bulk
102 tfl1-1-16ºC -0.52 >More info -0.37 >More info WT-16ºC Original data GEO bulk
103 OE WRKY40.4 0.54 >More info 0.35 >More info OE WRKY40.4 none leaf Original data GEO bulk
104 cs26 long day -0.53 >More info -0.36 >More info Leaves-WT-LD leaf Original data GEO bulk
105 WT NAA 2h -0.36 >More info -0.53 >More info WT 0h Leaf tissue Original data GEO bulk
106 col-5 hrpA 12h -0.58 >More info -0.31 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
107 SA 4mM -0.60 >More info -0.29 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
108 Col-0 RNAi-MBS2/mbs1-1 HL 3h 0.30 >More info 0.59 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
109 E.coli TUV86 2 fliC 7h -0.56 >More info -0.32 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
110 sex1-3 -0.62 >More info -0.26 >More info Col-WT leaves Original data GEO bulk
111 cpr5npr1 -0.60 >More info -0.28 >More info WT(COL) Original data GEO bulk
112 WT NAA/flg 1h -0.53 >More info -0.35 >More info WT 0h Leaf tissue Original data GEO bulk
113 Laer Flg22 2h -0.60 >More info -0.28 >More info Laer Control leaf discs Original data GEO bulk
114 pmr5 pmr6 -0.58 >More info -0.30 >More info Col-0 Original data GEO bulk
115 Col-0 INA 48h -0.55 >More info -0.32 >More info Col-0 MOCK 48h Original data GEO bulk
116 wt systemic wounding 0.20 >More info 0.67 >More info wt control leaves Original data GEO bulk
117 E.coli 0157 H7 7h -0.52 >More info -0.35 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
118 2hr transitory KNO3 PrR cell -0.37 >More info -0.50 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
119 erf104-ko Flg22 4h -0.53 >More info -0.33 >More info erf104-ko H2O 4h Original data GEO bulk
120 Nicotinamide-73hr -0.52 >More info -0.34 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
121 9 hr Hypoxia Total RNA -0.61 >More info -0.25 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
122 9m.KCl -0.58 >More info -0.28 >More info To. KCl 14 day old Roots Original data GEO bulk
123 WT +Pep2 10h -0.59 >More info -0.27 >More info WT untreated Pep2 Original data GEO bulk
124 Col-0 2HS -0.51 >More info -0.34 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
125 dorn1-1 Root 100 mM ATP 30 min 0.51 >More info 0.34 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
126 CMV-WT -0.52 >More info -0.33 >More info Mock-At Aerial tissues Original data GEO bulk
127 P.p 10.5hai -0.56 >More info -0.29 >More info At-Control roots Original data GEO bulk
128 CMP 4hr -0.65 >More info -0.20 >More info Acetone 4hr root Original data GEO bulk
129 abi4-102 (II) -0.54 >More info -0.31 >More info Col (II) rosette Original data GEO bulk
130 MYB29 OE 0.52 >More info 0.33 >More info WT for MYB29/76 Original data GEO bulk
131 IAA 0.5 h -0.29 >More info -0.56 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
132 Rose Bengal 0.5 uM -0.34 >More info -0.51 >More info Control RB and PER Rose Bengal Original data
133 vte2-1 3d vernalization -0.58 >More info -0.27 >More info WT 3d vernalization Original data GEO bulk
134 Laer Flg22+GA 1h -0.60 >More info -0.25 >More info Laer Control leaf discs Original data GEO bulk
135 P.syringae AvrRpt2 4 h (leaf) -0.58 >More info -0.27 >More info Mock 4 h (leaf) Original data Elicitor treatments
136 Wounding Stress3 h (root) 0.52 >More info 0.32 >More info Stress mock 3 h (root) Original data Stress treatments
137 rao1-1 3h antimycin A 0.51 >More info 0.33 >More info Col-Luc WT 3h antimycin A 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
138 Col-0 DCA 6d -0.50 >More info -0.34 >More info Col-0 MOCK 6d Original data GEO bulk
139 ataf1-1 mutant Col-0 Bgh inoculated -0.64 >More info -0.20 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
140 ptpks2 0.31 >More info 0.53 >More info Col-WT leaves Original data GEO bulk
141 E.orontii Infection 6 h -0.25 >More info -0.59 >More info Uninfection 6 h Original data Elicitor treatments
142 smg7b-1 -0.51 >More info -0.32 >More info WT whole plant Original data GEO bulk
143 MYB76 OE 0.50 >More info 0.33 >More info WT for MYB29/76 Original data GEO bulk
144 coi1-16 ein2 sid2 ozone -0.60 >More info -0.23 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
145 Salt Stress 24 h (root) -0.62 >More info -0.21 >More info Stress mock 24 h (root) Original data Stress treatments
146 Laer Flg22+GA 2h -0.54 >More info -0.28 >More info Laer Control leaf discs Original data GEO bulk
147 D2O -0.54 >More info -0.28 >More info H2O seedling Original data GEO bulk
148 mpk6-ko Flg22 4h -0.55 >More info -0.27 >More info mpk6-ko H2O 4h Original data GEO bulk
149 low CO2 + dark -0.54 >More info -0.28 >More info normal CO2 + light Original data GEO bulk
150 dTLEc systemic wounding -0.32 >More info -0.50 >More info wt systemic wounding leaves Original data GEO bulk
151 cys-c1 root 0.50 >More info 0.31 >More info Root-WT roots Original data GEO bulk
152 WT NAA/flg 2h -0.51 >More info -0.30 >More info WT 0h Leaf tissue Original data GEO bulk
153 oligomycin 1 h -0.51 >More info -0.30 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
154 IMI 4mM -0.64 >More info -0.17 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
155 Laer Flg22 1h -0.60 >More info -0.21 >More info Laer Control leaf discs Original data GEO bulk
156 Laer pretreat GA Flg22 0h -0.56 >More info -0.24 >More info Laer pretreat water control leaf discs Original data GEO bulk
157 root cap pGL2(root cap pGL2BRI1) 0h BL -0.60 >More info -0.20 >More info WR 35S 0h BL brassinosteroid root Original data
158 rrd1 IBA 0.50 >More info 0.29 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
159 gai Control -0.62 >More info -0.17 >More info Laer Control leaf discs Original data GEO bulk
160 sid2-2 9 hpi A. brassicicola -0.62 >More info -0.17 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
161 myb61 xylem -0.27 >More info -0.52 >More info wt xylem xylem Original data GEO bulk
162 axr2 0.54 >More info 0.24 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
163 msh1 albino -0.53 >More info -0.25 >More info WT aerial part Original data GEO bulk
164 Stem tissue 5 days NAA -0.62 >More info -0.16 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
165 edr1 36 h powdery mildew -0.56 >More info -0.22 >More info Col-0 36 h powdery mildew Original data GEO bulk
166 9 hr Hypoxia 1 hr recovery IP RNA -0.61 >More info -0.17 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
167 Shoot apex inflorescence (after bolting) 0.13 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
168 35S:RPS4 eds1-2 24h 0.53 >More info 0.24 >More info 35S:RPS4 24h leaves Original data
169 vte2 leaves 48h LT -0.60 >More info -0.17 >More info Col leaves 48h LT 48h 9-11th adult leaves Original data
170 WT 3H Cold -0.27 >More info -0.50 >More info WT control Original data GEO bulk
171 seedling 24h after HZE atm-1 -0.52 >More info -0.24 >More info seedling day 2 unirradiated atm-1 24h Original data
172 root Dosed gold -0.59 >More info -0.17 >More info root No gold .125 mM gold 24 h roots Original data
173 C24 ozone -0.59 >More info -0.17 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
174 Shoot submergence 24h -0.51 >More info -0.25 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
175 root hypoxia total -0.59 >More info -0.17 >More info root control total Original data GEO bulk
176 WT-SA -0.51 >More info -0.25 >More info WT-mock spray 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
177 P.p 30hai -0.55 >More info -0.21 >More info At-Control roots Original data GEO bulk
178 0.125 mM gold 24 h -0.59 >More info -0.17 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
179 Col-Luc WT 3h antimycin A -0.64 >More info -0.12 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
180 atmospheric CO2 low Mg shoot -0.54 >More info -0.22 >More info atmospheric CO2 normal Mg shoot Shoot Original data
181 Col whole leaf 1dpi 0.20 >More info 0.56 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
182 anac017-2 AntimycinA 3h 0.64 >More info 0.11 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
183 DFPM -0.56 >More info -0.19 >More info control Original data GEO bulk
184 Seedling-HeatStressed TOTALmRNA -0.55 >More info -0.20 >More info Seedling-control TOTALmRNA seedling Original data
185 Col-0-3h IAA -0.58 >More info -0.16 >More info Col-0-0h IAA whole plant Original data GEO bulk
186 OE-HRA1 NS  -0.55 >More info -0.19 >More info Col-0NS 2 h non-stress (2NS) 7-day-old seedlings Original data
187 Col-0 C2H4 24h -0.61 >More info -0.13 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
188 AtMYB30-ox 90-105 min Xanthomonas -0.55 >More info -0.19 >More info WT 90-105 min Xanthomonas Original data GEO bulk
189 P.p 6hai -0.59 >More info -0.14 >More info At-Control roots Original data GEO bulk
190 Bur-0-3h IAA -0.52 >More info -0.21 >More info Bur-0h IAA whole plant Original data GEO bulk
191 hrpA fliC 7h -0.55 >More info -0.18 >More info Mock 7h hrpA fliC Original data GEO bulk
192 LTN008-2 aza-dc -0.57 >More info -0.16 >More info LTN012-2 Mock Original data
193 opr3 JA 2 h 0.13 >More info 0.60 >More info opr3 0 h Original data GEO bulk
194 P. infestans 6 h (leaf) -0.57 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
195 ataf1-1 mutant Col-0 Un-inoculated 0.61 >More info 0.11 >More info WT Col-0 Un-inoculated Original data GEO bulk
196 Cold Stress 24 h (root) -0.53 >More info -0.19 >More info Stress mock 24 h (root) Original data Stress treatments
197 1 h Light Total RNA 0.55 >More info 0.16 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
198 xrn4-5 flower 0.53 >More info 0.18 >More info Col-0 flower inflorescence Original data GEO bulk
199 miR 0h -0.57 >More info -0.14 >More info Col 0h Leaf Original data GEO bulk
200 (Col-0)+200 uM As -0.51 >More info -0.20 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
201 Root -Cs -0.55 >More info -0.15 >More info Control-root Original data GEO bulk
202 overexpresser LBD38 in -N 0.53 >More info 0.17 >More info WT in -N nitrogen depletion whole seedling Original data GEO bulk
203 seedling 1.5h after HZE atm-1 -0.53 >More info -0.17 >More info seedling day 1 unirradiated atm-1 1.5h Original data
204 C24-3h IAA -0.53 >More info -0.17 >More info C24-0h IAA whole plant Original data GEO bulk
205 CMP 24hr -0.68 >More info -0.02 >More info Acetone 24hr root Original data GEO bulk
206 wrky33 Bc inoculation 14h -0.64 >More info -0.06 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
207 Te ozone -0.58 >More info -0.12 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
208 coronatine 0.19 >More info 0.51 >More info control rosette leaves Original data
209 irradiated leaf (cmt 1d) -0.55 >More info -0.14 >More info control leaf (cmt 1d) rosette leaf only Original data GEO bulk
210 Col-0 low oxygen -0.54 >More info -0.15 >More info Col-0 control low oxygen root Original data GEO bulk
211 current injection 0.13 >More info 0.56 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
212 polysome mRNA eif3k 0.19 >More info 0.50 >More info polysome mRNA WT aerial part Original data GEO bulk
213 HairpinZ 4 h (leaf) -0.65 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
214 IRP1-OE-Fe--shoot -0.53 >More info -0.15 >More info COL-0-Fe--shoot shoot Original data
215 Aerobic e1 ate2 -0.51 >More info -0.17 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
216 9 hr Hypoxia 1 hr recovery Total RNA -0.58 >More info -0.10 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
217 root cap pGL2 0h BL -0.56 >More info -0.11 >More info WR 35S 0h BL brassinosteroid root Original data
218 WT Bc inoculation 14h -0.62 >More info -0.05 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
219 safener treated -0.55 >More info -0.12 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
220 hrcC -0.52 >More info -0.14 >More info MgCl2 5x10^7 cfu/ml DC3000 hrcC mutant Original data GEO bulk
221 col-5 DC3000 12h -0.55 >More info -0.11 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
222 SLWF infested -0.58 >More info -0.08 >More info SLWF uninfested rosette tissue Original data GEO bulk
223 2 hr Hypoxia IP RNA -0.51 >More info -0.14 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
224 irradiated leaf (cmt 5d) -0.55 >More info -0.10 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
225 R. solani AG8 -0.52 >More info -0.13 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
226 Shoot P recovery -0.59 >More info -0.06 >More info Shoot -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
227 MPK6 ox Shoot Hypoxia -0.57 >More info -0.08 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
228 CT101 ozone -0.53 >More info -0.11 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
229 Col-0 under 4 days salt -0.62 >More info -0.02 >More info Col-0 under control 4 days salt treatment rosette Original data
230 CMV-A2b mutant -0.55 >More info -0.09 >More info Mock-At Aerial tissues Original data GEO bulk
231 ddm1 F6 inflorescence -0.53 >More info -0.11 >More info wt Col inflorescence unopened flower buds Original data
232 Col PSTDC3000 24h -0.50 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
233 Light -0.50 >More info -0.13 >More info Control Original data GEO bulk
234 DC3000 2 h (leaf) -0.51 >More info -0.12 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
235 Nicotinamide-65hr -0.52 >More info -0.11 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
236 seed germinating in countinuous light 24h SL -0.04 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
237 Atwrky63 0.52 >More info 0.10 >More info Col0 none leaf Original data GEO bulk
238 msh1 stunt -0.50 >More info -0.12 >More info WT Col-0 above ground part of plant Original data GEO bulk
239 C24 24h cold 0.51 >More info 0.11 >More info Col 24h cold leaf Original data GEO bulk
240 eds16 whole leaf 0h UI 0.08 >More info 0.54 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
241 Fenclorim 4hr -0.54 >More info -0.07 >More info Acetone 4hr root Original data GEO bulk
242 calcicole ecotype Cal-0 -0.53 >More info -0.08 >More info Col-4 1 mM CaCl2 Original data GEO bulk
243 SCR-GR Time 12H Dex -0.52 >More info -0.09 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
244 Col-0-avrB-6h -0.61 >More info -0.00 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
245 coi1-PsmES4326-24hpi -0.10 >More info -0.51 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
246 GV3101 3hpi -0.06 >More info -0.54 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
247 hrpA 7h -0.50 >More info -0.10 >More info Mock 7h hrpA Original data GEO bulk
248 Cocultivation 8 hrs root -0.51 >More info -0.09 >More info Mock cocultivation 8 hrs root Root Original data
249 npr1-1 SA 0.55 >More info 0.04 >More info Col-0 SA complete seedling Original data
250 Col-0 ozone -0.54 >More info -0.05 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
251 Fenclorim 24hr -0.57 >More info -0.02 >More info Acetone 24hr root Original data GEO bulk
252 Col-0 wt Hypoxic -0.57 >More info -0.02 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
253 WT 30μM arsenate 8 hours. -0.51 >More info -0.08 >More info WT control (not supplemented). Original data
254 axr2-BR 0.50 >More info 0.09 >More info BR BR dark-grown seedlings Original data GEO bulk
255 Col-0 ozone- (control genotype tga2 tag5 tga6) -0.56 >More info -0.02 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
256 ckh2 CK0 -0.50 >More info -0.08 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
257 seedling 3h after HZE WT -0.60 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
258 1 h Light IP RNA 0.52 >More info 0.05 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
259 Col-0 ozone- (control genotype coi1-16 ein2 sid2) -0.54 >More info -0.03 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
260 gh3.5-1D 48 hpi -0.52 >More info -0.05 >More info Col-0 uninoculated Original data GEO bulk
261 flu over-tAPX -0.51 >More info -0.06 >More info WT Col Original data GEO bulk
262 opr3 OPDA 0.5 h -0.05 >More info -0.52 >More info opr3 0 h Original data GEO bulk
263 DC3000 24h -0.07 >More info 0.64 >More info Mock 24h DC3000 Original data GEO bulk
264 gun1-1 +lincomycin 0.55 >More info 0.01 >More info Col-0 +lincomycin Original data GEO bulk
265 coi1-16 ein2 sid2 ctrl 0.50 >More info 0.06 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
266 Nicotinamide-57hr -0.51 >More info -0.05 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
267 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
268 8-DAC chr11-1chr17-1 -0.51 >More info -0.04 >More info 8-DAC Col-0 leaf explants Original data
269 WT Shoot Hypoxia -0.54 >More info -0.01 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
270 Methyl Jasmonate 1 h 0.02 >More info 0.53 >More info Mock 1 h Original data Basic hormone treatment of seedlings
271 Laer pretreat GA+JA Flg22 0h -0.51 >More info -0.02 >More info Laer pretreat water control leaf discs Original data GEO bulk
272 ckh1 CK200 -0.55 >More info 0.02 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
273 pvip1 pvip2 seedling -0.51 >More info -0.02 >More info Col-0 seedling seedling Original data GEO bulk
274 IAA7mII over-expressor IAA Treated -0.17 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
275 Seedling KUA1-IOX est -0.54 >More info 0.03 >More info Seedling KUA1-IOX mock Original data
276 JMJ24-IBM1 double knockout 0.52 >More info -0.01 >More info WT Original data GEO bulk
277 OPDA 4 h 0.01 >More info 0.50 >More info Col-0 Original data GEO bulk
278 Light 3day hml 0.01 >More info 0.50 >More info 0h hml Original data
279 plant (Col-0) 4h OPDA 0.01 >More info 0.50 >More info plant (Col-0) 4h control Original data GEO bulk
280 Laer pretreat JA Flg22 1h -0.56 >More info 0.06 >More info Laer pretreat water control leaf discs Original data GEO bulk
281 AvrRpt2 Col-0 6hpi -0.62 >More info 0.12 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
282 Laer treat paclobutrazol (PAC) -0.53 >More info 0.03 >More info Laer Control leaf discs Original data GEO bulk
283 Leafminer locally damaged thaliana seedlings -0.61 >More info 0.12 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
284 Dark 3day ivd -0.50 >More info 0.02 >More info 0h ivd Original data
285 Osmotic Stress 24 h (shoot) -0.55 >More info 0.08 >More info Stress mock 24 h (shoot) Original data Stress treatments
286 Heat shock optimum -0.18 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
287 ANAC102 knock-out 0.05 >More info -0.51 >More info Col-0 Original data GEO bulk
288 cca1-lhy before light 0.05 >More info -0.51 >More info before light whole seedlings Original data GEO bulk
289 penta MeJA 1h -0.51 >More info 0.06 >More info Laer MeJA 1h leaf discs Original data GEO bulk
290 leaf13 -0.10 >More info 0.52 >More info unwounded leaves none Original data GEO bulk
291 RGA-GR-DEX -0.08 >More info 0.50 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
292 atmyc2 Seedling BL+ABA 0.50 >More info -0.10 >More info WT Seedling BL+ABA Original data GEO bulk
293 AmGSTF1 expressor 0.11 >More info -0.51 >More info WT leaf tissue Original data GEO bulk
294 Pst-DC3000(avrRpm1)-4hpi -0.17 >More info 0.57 >More info Pst-DC3000-4hpi Original data GEO bulk
295 NJ15 -0.51 >More info 0.13 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
296 light 0.54 >More info -0.18 >More info dark light seedling Original data GEO bulk
297 Col BTH -0.32 >More info 0.67 >More info Col rosettes Original data GEO bulk
298 Botrytis cinerea 48h -0.55 >More info 0.22 >More info control 48h Original data GEO bulk
299 siliques AtHb1 control -0.19 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
300 phosphate-starved 0.19 >More info -0.51 >More info control shoot tissue Original data GEO bulk
301 0h ivd -0.26 >More info 0.54 >More info 0h wt Original data
302 WT +Pep2 2h -0.62 >More info 0.35 >More info WT untreated Pep2 Original data GEO bulk
303 GO5; 0h switch to ambient CO2 concentrations; 0.55 >More info -0.29 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
304 AB -0.53 >More info 0.28 >More info COL seedling Original data
305 Laer pretreat GA Flg22 1h -0.47 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
306 Col0-PsmES4326-24hpi -0.53 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
307 Leafminer damaged seedlings -0.61 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk