4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on Cold Stress 24 h (root)
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "Cold Stress 24 h (root)"  Help Download transcriptome of top 30
Score Experiment Correlation from
Cold Stress 24 h (root)		 Correlation to
Cold Stress 24 h (root)		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Cold Stress 24 h (root) 1.00 >More info 1.00 >More info Stress mock 24 h (root) Original data Stress treatments
2 WT 24H Cold 0.81 >More info 0.80 >More info WT control Original data GEO bulk
3 WT cold 12 h 0.79 >More info 0.76 >More info WT cold 0h GSM955987 seedlings Original data GEO bulk
4 WT 6H Cold 0.75 >More info 0.79 >More info WT control Original data GEO bulk
5 WT cold 24h 0.72 >More info 0.76 >More info WT cold 0h cold at 4°C seedlings Original data GEO bulk
6 Cold Stress 24 h (shoot) 0.70 >More info 0.74 >More info Stress mock 24 h (shoot) Original data Stress treatments
7 4C 24h 0.69 >More info 0.73 >More info 4C 0h Original data GEO bulk
8 4C 24h(SOIL) 0.62 >More info 0.78 >More info 4C 0h(SOIL) Original data GEO bulk
9 Salt Stress 24 h (root) 0.70 >More info 0.70 >More info Stress mock 24 h (root) Original data Stress treatments
10 WT 24h cold 0.66 >More info 0.72 >More info WT warm 24h cold entire aerial part Original data GEO bulk
11 short 10-degree- 0.65 >More info 0.67 >More info control short Original data GEO bulk
12 col 24h4c set4 0.68 >More info 0.64 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
13 4C 7d(SOIL) 0.57 >More info 0.72 >More info 4C 0h(SOIL) Original data GEO bulk
14 short 12-degree- 0.58 >More info 0.70 >More info control short Original data GEO bulk
15 camta1/2 warm -0.58 >More info -0.70 >More info WT 24h cold entire aerial part Original data GEO bulk
16 ws 24h4c q8ws 0.64 >More info 0.60 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
17 short 8-degree- 0.66 >More info 0.58 >More info control short Original data GEO bulk
18 WT cold 0.60 >More info 0.64 >More info WT control All aerial tissue Original data GEO bulk
19 whole roots 140 mM NaCl 1 hour 0.54 >More info 0.68 >More info whole roots standard Original data GEO bulk
20 4C 7d 0.64 >More info 0.58 >More info 4C 0h Original data GEO bulk
21 Total RNA csp1 cold 0.57 >More info 0.64 >More info Total RNA csp1 12h cold (4C) rosettes Original data GEO bulk
22 4C 0h 0.60 >More info 0.61 >More info 22C 0h Original data GEO bulk
23 whole roots 140 mM NaCl 4 hour 0.54 >More info 0.67 >More info whole roots standard Original data GEO bulk
24 Col 1d 0.59 >More info 0.60 >More info Col CA Leaves Original data
25 root endodermis and quiescent center 40 mM NaCl 0.58 >More info 0.61 >More info root endodermis and quiescent center Original data GEO bulk
26 WT 3H Cold 0.48 >More info 0.71 >More info WT control Original data GEO bulk
27 CSP1 immonoprecipitated RNA 35S:AtCSP1-FH1 cold 0.55 >More info 0.63 >More info CSP1 immonoprecipitated RNA 35S:AtCSP1-FH1 12h cold (4C) rosettes Original data GEO bulk
28 NaCl Col 0.52 >More info 0.65 >More info Col Original data GEO bulk
29 Roots Cd -0.50 >More info -0.65 >More info Roots control Cd Root Original data GEO bulk
30 root columella root cap 40 mM NaCl 0.51 >More info 0.64 >More info root columella root cap Original data GEO bulk
31 root longitudinal zone-4 NaCl 0.50 >More info 0.64 >More info root longitudinal zone-4 Original data GEO bulk
32 Osmotic Stress 24 h (root) 0.52 >More info 0.62 >More info Stress mock 24 h (root) Original data Stress treatments
33 Col-O low light -0.63 >More info -0.50 >More info Col-O bule light Original data GEO bulk
34 4C 1h 0.47 >More info 0.66 >More info 4C 0h Original data GEO bulk
35 1h +Pi -0.49 >More info -0.63 >More info 1h -Pi root Original data GEO bulk
36 CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold 0.49 >More info 0.63 >More info CSP1 immonoprecipitated RNA 35S:HF-RPL18 12h cold (4C) rosettes Original data GEO bulk
37 whole roots 140 mM NaCl 30 minutes 0.40 >More info 0.70 >More info whole roots standard Original data GEO bulk
38 Col 8h 0.48 >More info 0.62 >More info Col CA Leaves Original data
39 spx1 spx2 complete 0.50 >More info 0.59 >More info WT complete seedlings Original data
40 WT cold 0.53 >More info 0.55 >More info WT warm 3 week cold entire aerial part Original data GEO bulk
41 root stele 40 mM NaCls 0.55 >More info 0.53 >More info root stele Original data GEO bulk
42 chito-octamer 0.47 >More info 0.61 >More info Col Mock Original data GEO bulk
43 chito-tetramer 0.49 >More info 0.59 >More info Col Mock Original data GEO bulk
44 oligomycin 4 h 0.51 >More info 0.56 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
45 Col 3d 0.55 >More info 0.52 >More info Col CA Leaves Original data
46 Cycloheximide 3 h 0.46 >More info 0.60 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
47 CMP 4hr 0.53 >More info 0.52 >More info Acetone 4hr root Original data GEO bulk
48 Ts5 roots 2hr KCl control 0.50 >More info 0.55 >More info Col0 roots 2hr KCl control root Original data GEO bulk
49 WT+chitooctaose 0.44 >More info 0.61 >More info WT+water chitooctaose seedlings Original data GEO bulk
50 naxillin 3h 0.47 >More info 0.58 >More info before treatment naxillin root Original data GEO bulk
51 0.125 mM gold 24 h 0.47 >More info 0.58 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
52 root Dosed gold 0.47 >More info 0.58 >More info root No gold .125 mM gold 24 h roots Original data
53 ABA 1 h 0.41 >More info 0.63 >More info Mock 1 h Original data Basic hormone treatment of seedlings
54 long 14-degree- 0.32 >More info 0.72 >More info control long Original data GEO bulk
55 5-Triiodobenzoic acid3 h 0.50 >More info 0.52 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
56 (Col-0)+200 uM As 0.51 >More info 0.50 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
57 AgNO3 3 h 0.43 >More info 0.58 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
58 short 17-degree- 0.40 >More info 0.61 >More info control short Original data GEO bulk
59 phr1 Root-Pi 0.52 >More info 0.48 >More info WT Root+Pi roots Original data GEO bulk
60 Laer pretreat GA Flg22 1h 0.29 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
61 4C 1h 0.54 >More info 0.45 >More info 22C 1h Original data GEO bulk
62 Rsch 1d 0.50 >More info 0.49 >More info Rsch CA Leaves Original data
63 WT resupplied Pi 4h 0.50 >More info 0.49 >More info WT complete seedlings Original data
64 short 14-degree- 0.48 >More info 0.51 >More info control short Original data GEO bulk
65 cys-c1 root -0.49 >More info -0.50 >More info Root-WT roots Original data GEO bulk
66 toc1-1-57hr 0.44 >More info 0.55 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
67 CBF3 100mM NaCl 0.38 >More info 0.61 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk
68 oligomycin 1 h 0.36 >More info 0.63 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
69 4C 2h(SOIL) 0.35 >More info 0.64 >More info 4C 0h(SOIL) Original data GEO bulk
70 inhibitor B Treated 0.39 >More info 0.59 >More info Negative Control Original data GEO bulk
71 inhibitor A Treated 0.38 >More info 0.60 >More info Negative Control Original data GEO bulk
72 coi1-2 0.35 >More info 0.63 >More info Col-0 mock Whole seedling Original data GEO bulk
73 Col leaves 48h LT 0.46 >More info 0.52 >More info Col leaves 0h LT 48h 9-11th adult leaves Original data
74 Cocultivation 8 hrs root 0.43 >More info 0.55 >More info Mock cocultivation 8 hrs root Root Original data
75 WT 30μM arsenate 8 hours. 0.52 >More info 0.45 >More info WT control (not supplemented). Original data
76 Phytoprostane A1 4 h 0.46 >More info 0.51 >More info Col-0 Original data GEO bulk
77 toc1-1-77hr 0.39 >More info 0.58 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
78 P.p 30hai 0.42 >More info 0.55 >More info At-Control roots Original data GEO bulk
79 35S::CBF2 0.33 >More info 0.64 >More info Ws2 Original data GEO bulk
80 myb61 xylem 0.38 >More info 0.59 >More info wt xylem xylem Original data GEO bulk
81 6h +Pi -0.40 >More info -0.56 >More info 6h -Pi root Original data GEO bulk
82 rosette Light Wounded 0.41 >More info 0.55 >More info rosette Light Control Original data GEO bulk
83 (Col-0)+100 uM As 0.46 >More info 0.50 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
84 WT AntimycinA 3h 0.44 >More info 0.52 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
85 HARAP aerobic -0.28 >More info -0.67 >More info WT aerobic aerobic Original data GEO bulk
86 Col-0 under 4 days salt 0.53 >More info 0.42 >More info Col-0 under control 4 days salt treatment rosette Original data
87 WT chitooctaose 0.44 >More info 0.51 >More info WT water Original data GEO bulk
88 flu 0.38 >More info 0.56 >More info WT Col Original data GEO bulk
89 rosette Dark Wounded 0.43 >More info 0.51 >More info rosette Dark Control Original data GEO bulk
90 35S:RPS4 eds1-2 2h -0.35 >More info -0.59 >More info 35S:RPS4 2h leaves Original data
91 Leafminer damaged seedlings 0.37 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
92 P.syringae AvrRpt2 4 h (leaf) 0.33 >More info 0.60 >More info Mock 4 h (leaf) Original data Elicitor treatments
93 Col-0-avrB-6h 0.42 >More info 0.51 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
94 whole roots 140 mM NaCl 16 hour 0.36 >More info 0.57 >More info whole roots standard Original data GEO bulk
95 dorn1-1 Root 100 mM ATP 30 min -0.30 >More info -0.63 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
96 long 8-degree- 0.37 >More info 0.55 >More info control long Original data GEO bulk
97 WT NAA/flg 1h 0.36 >More info 0.56 >More info WT 0h Leaf tissue Original data GEO bulk
98 3m.KCl 0.40 >More info 0.52 >More info To. KCl 14 day old Roots Original data GEO bulk
99 P.p 6hai 0.39 >More info 0.53 >More info At-Control roots Original data GEO bulk
100 hira-root -0.36 >More info -0.56 >More info WT-root root Original data
101 root - 04% oxygen - 2h -0.30 >More info -0.62 >More info root - 21% oxygen - 2h Original data GEO bulk
102 SCR-GR Time 1H Dex 0.23 >More info 0.69 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
103 Col0-PsmES4326-24hpi 0.31 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
104 Whole root - low pH 3H 0.35 >More info 0.57 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
105 WT-Dry 0.35 >More info 0.57 >More info WT-CK dehydration treatment 1h Original data
106 flu over-tAPX 0.35 >More info 0.56 >More info WT Col Original data GEO bulk
107 Transgenic LEC2GR Seedling 1h Dex 0.39 >More info 0.52 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
108 pepr1-1 Pepr2-3 +Pep2 2h -0.39 >More info -0.52 >More info WT +Pep2 2h Pep2 Original data GEO bulk
109 Leaf wounded 0.28 >More info 0.63 >More info Leaf control vegetative leaf Original data GEO bulk
110 WT+H2O2 0.38 >More info 0.53 >More info WT H2O2 Original data GEO bulk
111 root protoplasts 40 mM NaCl 0.35 >More info 0.56 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
112 bak1-3 +Pep2 10h 0.41 >More info 0.50 >More info WT +Pep2 10h Pep2 Original data GEO bulk
113 ABA 3 h 0.40 >More info 0.50 >More info Mock 3 h Original data Basic hormone treatment of seedlings
114 Cor 10h 0.35 >More info 0.54 >More info Mock 10h Cor Original data GEO bulk
115 plant (tga2-5-6) 4h phytoprostane A1 0.38 >More info 0.50 >More info plant (tga2-5-6) 4h control Original data GEO bulk
116 Kas2 roots 2hr KNO3 nitrogen 0.37 >More info 0.51 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
117 rcf1-1 cold 24h 0.51 >More info 0.36 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
118 long 17-degree- 0.23 >More info 0.64 >More info control long Original data GEO bulk
119 long 10-degree- 0.37 >More info 0.50 >More info control long Original data GEO bulk
120 bZIP1ko mutant N+Light- 0.26 >More info 0.61 >More info WT-sib N+Light- whole plant Original data GEO bulk
121 bak1-3 +Pep2 2h 0.25 >More info 0.62 >More info WT +Pep2 2h Pep2 Original data GEO bulk
122 long 12-degree- 0.33 >More info 0.53 >More info control long Original data GEO bulk
123 oas-a1.1 Cd 18h 0.33 >More info 0.53 >More info Cd 18h root Root Original data GEO bulk
124 DFPM 0.34 >More info 0.52 >More info control Original data GEO bulk
125 FLIGHT TAGESB plate6 ROOTS 0.33 >More info 0.53 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
126 wt systemic wounding 0.35 >More info 0.51 >More info wt control leaves Original data GEO bulk
127 WT flg22 1h 0.33 >More info 0.52 >More info WT 0h Leaf tissue Original data GEO bulk
128 Col in Pi deficiency medium 0.22 >More info 0.62 >More info Col in control medium root Original data GEO bulk
129 GO5; 8h switch to ambient CO2 concentrations; 0.31 >More info 0.52 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
130 root - 08% oxygen - 48h -0.23 >More info -0.60 >More info root - 21% oxygen - 48h Original data GEO bulk
131 Laer Flg22 1h 0.32 >More info 0.50 >More info Laer Control leaf discs Original data GEO bulk
132 WT 2-4h Xanthomonas 0.30 >More info 0.52 >More info WT T0 Original data GEO bulk
133 Selenate (root) 0.31 >More info 0.50 >More info Ws (root) Original data GEO bulk
134 IAA/inhibitor B Treated 0.30 >More info 0.51 >More info IAA Treated Original data GEO bulk
135 Root Selenate 0.31 >More info 0.50 >More info Root control 40 micromolar selenate Root Original data GEO bulk
136 P.p 2.5hai 0.21 >More info 0.60 >More info At-Control roots Original data GEO bulk
137 myb3 myb3r4d 0.22 >More info 0.59 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
138 npr1-3 MOCK 48h -0.29 >More info -0.51 >More info Col-0 MOCK 48h Original data GEO bulk
139 Heat shock optimum 0.15 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
140 Whole root - low pH 12H 0.29 >More info 0.51 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
141 Whole root - low pH 1H 0.27 >More info 0.52 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
142 Inflorescences Trp1 -0.25 >More info -0.54 >More info Inflorescences ler inflorescences Original data GEO bulk
143 12m.KCl 0.21 >More info 0.58 >More info To. KCl 14 day old Roots Original data GEO bulk
144 root - 08% oxygen - 2h -0.20 >More info -0.58 >More info root - 21% oxygen - 2h Original data GEO bulk
145 miR393 flg22 1h 0.28 >More info 0.50 >More info WT 0h Leaf tissue Original data GEO bulk
146 1hr-pH4.5 0.27 >More info 0.51 >More info 1hr-pH6 1hr pH 4.5 roots Original data GEO bulk
147 Apex mir-3TCP 14DAS -0.24 >More info -0.53 >More info Apex Col 14DAS Original data GEO bulk
148 WT NAA 1h 0.25 >More info 0.52 >More info WT 0h Leaf tissue Original data GEO bulk
149 bri1-116 0.04 >More info 0.73 >More info Col seedling Original data GEO bulk
150 IAA7mII over-expressor IAA Treated 0.07 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
151 15m.KCl 0.23 >More info 0.53 >More info To. KCl 14 day old Roots Original data GEO bulk
152 myb61 cork 0.25 >More info 0.51 >More info wt cork cork Original data GEO bulk
153 seedlings-week-old RECA1-overexpressing
transgenic		 0.25 >More info 0.51 >More info seedlings-week-old Col-0 seedlings Original data
154 IAA 0.5 h 0.24 >More info 0.51 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
155 -Sulfate 24 h 0.25 >More info 0.50 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
156 TNT-seedlings 0.20 >More info 0.55 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
157 Col BTH 0.05 >More info 0.67 >More info Col rosettes Original data GEO bulk
158 amiRAP aerobic -0.19 >More info -0.53 >More info WT aerobic aerobic Original data GEO bulk
159 HARAP hypoxic 0.22 >More info 0.50 >More info hypoxic hypoxia Original data GEO bulk
160 bHLH122 ox -0.17 >More info -0.54 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
161 3x(m) 0.11 >More info 0.59 >More info 2x two week old seedlings Original data
162 opr3 OPDA 0.5 h 0.13 >More info 0.56 >More info opr3 0 h Original data GEO bulk
163 Protoplast Induced 0.19 >More info 0.50 >More info Uninduced Original data GEO bulk
164 gpa1 -ABA GC -0.16 >More info -0.52 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
165 WT 3h -P 0.18 >More info 0.50 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
166 ex2 flu dark 8hours/30 minute light 0.11 >More info 0.56 >More info col dark 8hours/30 minute light Original data GEO bulk
167 estradiole-induced ANAC059 0.13 >More info 0.54 >More info transgenic (empty vector inducible system) Original data GEO bulk
168 flu dark 8hours/30 minute light 0.09 >More info 0.56 >More info col dark 8hours/30 minute light Original data GEO bulk
169 phyABDE 4-day dark- 2 hours Rc50 0.10 >More info 0.54 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
170 Col ozone 3h 0.13 >More info 0.51 >More info Col clean-air 3h ozone Original data GEO bulk
171 Laer pretreat JA Flg22 0h 0.12 >More info 0.51 >More info Laer pretreat water control leaf discs Original data GEO bulk
172 siliques AtHb1 control 0.08 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
173 35S:VND7-VP16-GR+CHX 0.00 >More info 0.59 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
174 Aerobic prt6 -0.07 >More info -0.51 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
175 non-polysome mRNA eif3k -0.01 >More info -0.57 >More info non-polysome mRNA WT aerial part Original data GEO bulk
176 Shoot apex inflorescence (after bolting) -0.18 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
177 CCA1-ox 6am non-polysomal -0.06 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
178 seed germinating in countinuous light 24h SL -0.24 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
179 control leaf (cmt 5d) -0.11 >More info 0.53 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk