4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on phyABDE 4-day dark- 2 hours Rc50
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List of experiments correlated with "phyABDE 4-day dark- 2 hours Rc50"  Help Download transcriptome of top 30
Score Experiment Correlation from
phyABDE 4-day dark- 2 hours Rc50		 Correlation to
phyABDE 4-day dark- 2 hours Rc50		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 phyABDE 4-day dark- 2 hours Rc50 1.00 >More info 1.00 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
2 Imbibed 24 h ABA 30uM (seed) 0.58 >More info 0.63 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
3 rosettes myoox drought 0.62 >More info 0.57 >More info rosettes myoox watered Original data GEO bulk
4 hsfa1 quadruple mutant 0.62 >More info 0.50 >More info WT (Col-0) whole seedling Original data GEO bulk
5 FarRed Light 45min -0.45 >More info -0.66 >More info White Light 45min Original data Light treatments
6 Red/FR Light45min 0.38 >More info 0.73 >More info FarRed Light 45min Original data Light treatments
7 dsr1 -0.51 >More info -0.59 >More info WT mock Whole seedling Original data GEO bulk
8 mdh 0.58 >More info 0.51 >More info Col Original data GEO bulk
9 IAA7mII over-expressor IAA Treated 0.37 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
10 60m light 0.73 >More info 0.29 >More info before light whole seedlings Original data GEO bulk
11 siliques AtHb1 control 0.49 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
12 rosettes WT drought 0.42 >More info 0.58 >More info rosettes WT watered Original data GEO bulk
13 35S-MIF1 dark grown 0.53 >More info 0.44 >More info Dark-grown WT control Original data GEO bulk
14 phr1 phl1 Root-Pi 0.52 >More info 0.45 >More info WT Shoot+Pi roots Original data GEO bulk
15 phyABCDE 4-day dark- 2 hours Rc50 0.41 >More info 0.56 >More info phyABCDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
16 ABA control 0.29 >More info 0.68 >More info No ABA control Original data GEO bulk
17 Leafminer damaged seedlings 0.41 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
18 ged1 seedlings -0.35 >More info -0.61 >More info Ws seedlings Original data GEO bulk
19 Ws seedlings 0.35 >More info 0.61 >More info ged1 seedlings Original data GEO bulk
20 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		-0.41 >More info -0.55 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
21 fri-flc 0.39 >More info 0.55 >More info WT Original data GEO bulk
22 piffq 2d WL 0.22 >More info 0.72 >More info WT 2d WL whole seedling Original data GEO bulk
23 ABA 1 h 0.34 >More info 0.59 >More info Mock 1 h Original data Basic hormone treatment of seedlings
24 WT (Col-0) inflorescence drought day 10 0.53 >More info 0.39 >More info WT (Col-0) inflorescence well-watered day 10 Unopen flower buds Original data GEO bulk
25 Col-0 +ABA GC 0.51 >More info 0.41 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
26 short 10-degree- 0.52 >More info 0.38 >More info control short Original data GEO bulk
27 WT no Pi 0.72 >More info 0.18 >More info WT complete seedlings Original data
28 etiolated atbzip16 0.28 >More info 0.61 >More info etiolated Ler etiolated aerial part of seedlings Original data GEO bulk
29 Pto inoculated 0.69 >More info 0.20 >More info col Original data GEO bulk
30 phyABCDE Dark 0.18 >More info 0.71 >More info WT Dark Dark whole seedling Original data GEO bulk
31 WT 24H Cold 0.59 >More info 0.28 >More info WT control Original data GEO bulk
32 Col0-PsmES4326-24hpi 0.26 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
33 ahg1-1 0.21 >More info 0.66 >More info ABA control Original data GEO bulk
34 WT resupplied Pi 4h 0.69 >More info 0.17 >More info WT complete seedlings Original data
35 Homozygous-AtcesA4 0.53 >More info 0.32 >More info Heterozygous-AtcesA4 rosette Original data GEO bulk
36 WT Shoot-Pi 0.64 >More info 0.21 >More info WT Shoot+Pi shoots Original data GEO bulk
37 WT (Col-0) inflorescence drought day 5 0.50 >More info 0.34 >More info WT (Col-0) inflorescence well-watered day 5 Unopen flower buds Original data GEO bulk
38 rosette Light Wounded 0.67 >More info 0.17 >More info rosette Light Control Original data GEO bulk
39 Chemically -0.26 >More info -0.58 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
40 Cold Stress 24 h (shoot) 0.55 >More info 0.28 >More info Stress mock 24 h (shoot) Original data Stress treatments
41 chl1-5 Nitrate 0.5h -0.29 >More info -0.54 >More info WT Nitrate 0.5h Original data GEO bulk
42 gul2-1 mutant 0.33 >More info 0.50 >More info WT 7 day-old whole seedlings Original data
43 msg2-BR -0.60 >More info -0.23 >More info BR BR dark-grown seedlings Original data GEO bulk
44 camta1/2 warm -0.58 >More info -0.25 >More info WT 24h cold entire aerial part Original data GEO bulk
45 T6 leaf-drought 0.50 >More info 0.32 >More info T6 leaf-well watered Original data GEO bulk
46 2d dark-grown WT(Col-0)/1 hr red light 0.63 >More info 0.19 >More info 2d dark-grown WT seedling Original data GEO bulk
47 root endodermis and quiescent center 40 mM NaCl 0.26 >More info 0.56 >More info root endodermis and quiescent center Original data GEO bulk
48 leaf13 0.60 >More info 0.22 >More info unwounded leaves none Original data GEO bulk
49 WT cold 0.65 >More info 0.16 >More info WT control All aerial tissue Original data GEO bulk
50 Col-0 Root 100 mM ATP 30 min -0.51 >More info -0.28 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
51 desiccated mature pollen grains -0.23 >More info -0.56 >More info hydrated pollen grains Original data GEO bulk
52 short 8-degree- 0.59 >More info 0.18 >More info control short Original data GEO bulk
53 HopZ1a treated ulp1c ulp1d 0.54 >More info 0.23 >More info col Original data GEO bulk
54 current injection 0.52 >More info 0.25 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
55 Cor 10h 0.51 >More info 0.26 >More info Mock 10h Cor Original data GEO bulk
56 gun5 control -0.59 >More info -0.18 >More info Col-0 control Original data GEO bulk
57 Col leaf scrape 5 dpi 0.52 >More info 0.24 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
58 root longitudinal zone-4 pH 4.6 -0.68 >More info -0.08 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
59 GA4 3 h (ga1 seed) 0.19 >More info 0.57 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
60 rosette leaves bdg 0.18 >More info 0.58 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
61 WT 3H Cold 0.25 >More info 0.51 >More info WT control Original data GEO bulk
62 GR::bZIP1 +CHX +N +DEX 0.62 >More info 0.13 >More info GR::bZIP1 empty vector control +CHX +N +DEX 1 µM DEX in Ethanol Original data
63 seed germinating in countinuous light 24h SL 0.07 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
64 pab polysome 0.11 >More info 0.63 >More info WT polysome seedling shoot/aerial seedling Original data
65 dor drought 0.53 >More info 0.20 >More info WT drought Original data GEO bulk
66 short 12-degree- 0.51 >More info 0.21 >More info control short Original data GEO bulk
67 bri1-116 -0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
68 Col-0 mbs1-1 HL 3h 0.53 >More info 0.17 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
69 clf-28 swn-7 0.05 >More info 0.65 >More info Col whole plant Original data GEO bulk
70 bbx24 in Simulated Shade 0.62 >More info 0.08 >More info WT in simulated shade shade seedling Original data
71 Dark 4 h pls RedLight 1min -0.20 >More info -0.50 >More info Dark 4 h Original data Light treatments
72 ABI3GR +DEX +CHX 0.19 >More info 0.51 >More info ABI3GR -DEX +CHX DEX CHX root/protoplasts Original data GEO bulk
73 gul2-1 bri1-5 mutant 0.20 >More info 0.50 >More info WT 7 day-old whole seedlings Original data
74 BLM+INA -0.55 >More info -0.14 >More info CK BLM and INA seedling Original data
75 A6 mutant -0.63 >More info -0.06 >More info WT rosette leaves Rosette leaves Original data GEO bulk
76 WT Na2S 0.64 >More info 0.04 >More info WT water Na2S leaf Original data GEO bulk
77 Sha-30min IAA -0.52 >More info -0.16 >More info Sha-0h IAA whole plant Original data GEO bulk
78 tbf1-mock spray 0.58 >More info 0.09 >More info WT-mock spray water for 6 hrs (spray) mature leaf Original data GEO bulk
79 Estradiol4 days 0.08 >More info 0.59 >More info Col Original data GEO bulk
80 estradiol induced LEC1 0.08 >More info 0.59 >More info control Original data GEO bulk
81 BLM -0.54 >More info -0.12 >More info CK BLM seedling Original data
82 elevated CO2 high Mg shoot -0.56 >More info -0.10 >More info atmospheric CO2 high Mg shoot Shoot Original data
83 35S::Zat12 0.05 >More info 0.61 >More info WT Original data GEO bulk
84 ASL9-ox -0.55 >More info -0.10 >More info WT aerial parts of seedlings Original data GEO bulk
85 ams -0.52 >More info -0.12 >More info WT anther Original data GEO bulk
86 Cold Stress 24 h (root) 0.54 >More info 0.10 >More info Stress mock 24 h (root) Original data Stress treatments
87 ANAC102 knock-out low oxygen -0.51 >More info -0.12 >More info Col-0 low oxygen Original data GEO bulk
88 roottip hypoxia total -0.53 >More info -0.10 >More info roottip control total Original data GEO bulk
89 35S-MIF1 light grown 0.09 >More info 0.54 >More info Light-grown WT control Original data GEO bulk
90 Laer pretreat GA Flg22 1h -0.08 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
91 frb1 mutant 0.12 >More info 0.51 >More info WT whole seedling Original data GEO bulk
92 xyl-grown cell culture- 1h 1mM Suc -0.04 >More info -0.58 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
93 root - 04% oxygen - 2h -0.57 >More info -0.03 >More info root - 21% oxygen - 2h Original data GEO bulk
94 35S:VND7-VP16-GR+CHX 0.03 >More info 0.57 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
95 Root -P 0.51 >More info 0.08 >More info Root Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
96 npr1 sni1 brca2a 0.57 >More info 0.02 >More info npr1 sni1 water water seedling Original data GEO bulk
97 rpl24 nonpolysome 0.51 >More info 0.08 >More info WT nonpolysome seedling shoot/aerial seedling Original data
98 ACN1-2 Sucrose 0.03 >More info -0.61 >More info Col-7 Sucrose Original data GEO bulk
99 2 h EST -0.54 >More info -0.03 >More info mock 2 h EST seedling Original data GEO bulk
100 NaCl Col 0.04 >More info 0.53 >More info Col Original data GEO bulk
101 an3-4 leaf primordia 0.52 >More info 0.04 >More info WT leaf primordia Original data GEO bulk
102 dde2-2 24hpi A. brassicicola 0.50 >More info 0.04 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
103 gapcp1gapcp2 -0.59 >More info 0.06 >More info WT Original data GEO bulk
104 Total RNA 35S:HF-RPL18 cold 0.56 >More info -0.03 >More info Total RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
105 WT (Ler) CK25 -0.50 >More info -0.03 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
106 pif3 Dark 0h 0.04 >More info -0.57 >More info WT Dark 0h etiolated seedling Original data GEO bulk
107 wrky72-2-NOCO2 INFECTED 0.53 >More info -0.01 >More info WT-NOCO2 INFECTED Original data GEO bulk
108 long 12-degree- 0.52 >More info 0.00 >More info control long Original data GEO bulk
109 apk1 apk2 0.54 >More info -0.02 >More info Col0-control whole rosette Original data GEO bulk
110 short 14-degree- 0.67 >More info -0.15 >More info control short Original data GEO bulk
111 Col BTH -0.15 >More info 0.67 >More info Col rosettes Original data GEO bulk
112 arr10 arr12 tZ 0.56 >More info -0.05 >More info tZ trans-zeatin roots Original data GEO bulk
113 rpoTmp(line) untreated -0.50 >More info -0.00 >More info WT(Col0) untreated (control rpoTmp) leaf Original data
114 MPK6 ox Shoot Hypoxia 0.13 >More info -0.62 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
115 whole roots 140 mM NaCl 30 minutes -0.04 >More info 0.51 >More info whole roots standard Original data GEO bulk
116 ein2-1 24hpi A. brassicicola 0.50 >More info -0.03 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
117 nar1-4/- -0.63 >More info 0.18 >More info WT whole seedling Original data GEO bulk
118 Heat shock optimum -0.21 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
119 lht1 PstDC3000 48h 0.51 >More info -0.07 >More info PstDC3000 48h 48hr leaf Original data GEO bulk
120 ACN1-2 0.19 >More info -0.63 >More info col-7 Original data GEO bulk
121 phyABDE Dark -0.17 >More info 0.61 >More info WT Dark Dark whole seedling Original data GEO bulk
122 sid2-1 warm -0.59 >More info 0.19 >More info WT warm entire aerial part Original data GEO bulk
123 Mutant iaa5_6_19 0.55 >More info -0.20 >More info Col Original data GEO bulk
124 P. infestans 6 h (leaf) 0.50 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
125 Infected Col-0 leaf -0.52 >More info 0.18 >More info Mock Col-0 leaf F. oxysporum leaf Original data GEO bulk
126 Shoot apex inflorescence (after bolting) -0.31 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
127 CCA1-ox 6am non-polysomal -0.41 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data