pif3 Dark 0h

4.0:Analysis result - correlation network

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Module-based correlation network(MCN) centered on pif3 Dark 0h

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List of experiments correlated with "pif3 Dark 0h"

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Score	Experiment	Correlation from pif3 Dark 0h	Correlation to pif3 Dark 0h	Control Experiment	Treatment	Tissue	Link to original data	Experimental Category
1	pif3 Dark 0h	1.00 >More info	1.00 >More info	WT Dark 0h		etiolated seedling	Original data	GEO bulk
2	pif3 Dark 1h	0.95 >More info	0.78 >More info	WT Dark 1h		etiolated seedling	Original data	GEO bulk
3	2d dark-grown pif1pif3pif4pif5 (pifq) mutant	0.77 >More info	0.59 >More info	2d dark-grown WT seedling			Original data	GEO bulk
4	2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr red light	0.78 >More info	0.56 >More info	2d dark-grown WT(Col-0)/1 hr red light			Original data	GEO bulk
5	bri1-116	0.54 >More info	0.73 >More info	Col		seedling	Original data	GEO bulk
6	mdh	-0.66 >More info	-0.53 >More info	Col			Original data	GEO bulk
7	ABA control	-0.56 >More info	-0.62 >More info	No ABA control			Original data	GEO bulk
8	35S-MIF1 light grown	-0.63 >More info	-0.55 >More info	Light-grown WT control			Original data	GEO bulk
9	gul2-1 mutant	-0.62 >More info	-0.52 >More info	WT		7 day-old whole seedlings	Original data
10	MPK6 ox Root Hypoxia	0.66 >More info	0.46 >More info	WT Root Normoxia (mock)	Hypoxia	Root	Original data	GEO bulk
11	WT(Ler) Rc50	0.48 >More info	0.60 >More info	WT(Ler) Dark			Original data	GEO bulk
12	del1-1 mutant 5d uninfected	-0.44 >More info	-0.63 >More info	Col-0 5d uininfected		mature fully expanded leaves	Original data	GEO bulk
13	phyB Dark	0.56 >More info	0.50 >More info	WT(Ler) Dark			Original data	GEO bulk
14	phyAphyB Dark	-0.55 >More info	-0.51 >More info	phyB Dark			Original data	GEO bulk
15	WT Rc50	0.48 >More info	0.58 >More info	WT Dark	red light	whole seedling	Original data	GEO bulk
16	col-5 hrpA 12h	-0.42 >More info	-0.64 >More info	col-5 MgCl2 12h		Whole leaf	Original data	GEO bulk
17	arf2 brz	0.51 >More info	0.53 >More info	arf2 mock			Original data	GEO bulk
18	pab polysome	-0.43 >More info	-0.61 >More info	WT polysome		seedling shoot/aerial seedling	Original data
19	Red/FR Light45min	-0.17 >More info	-0.86 >More info	FarRed Light 45min			Original data	Light treatments
20	B.cinerea 18 h infection	-0.37 >More info	-0.66 >More info	Mock 18 h			Original data	Botrytis cinerea infection
21	Botrytis cinerea 18h	-0.37 >More info	-0.66 >More info	control 18h			Original data	GEO bulk
22	ahg1-1	-0.41 >More info	-0.61 >More info	ABA control			Original data	GEO bulk
23	WT(Ler) Rc15	0.40 >More info	0.62 >More info	WT(Ler) Dark			Original data	GEO bulk
24	ein2-1 9 hpi A. brassicicola	-0.41 >More info	-0.61 >More info	Col-0 9 hpi mock		3rd-5th true leaves	Original data
25	clf-28 swn-7	-0.64 >More info	-0.37 >More info	Col		whole plant	Original data	GEO bulk
26	hsfa1 quadruple mutant heat shock	-0.60 >More info	-0.41 >More info	WT (Col-0) heat shock		whole seedling	Original data	GEO bulk
27	Phaseolicola 2 h (leaf)	-0.41 >More info	-0.60 >More info	Mock 2 h (leaf)			Original data	Pseudomonas syringae pv. tomato or pv. phaseolicola infection
28	Col-0 9 hpi A. brassicicola	-0.40 >More info	-0.61 >More info	Col-0 9 hpi mock		3rd-5th true leaves	Original data
29	phyABDE Rc50	0.68 >More info	0.32 >More info	phyABDE Dark	red light	whole seedling	Original data	GEO bulk
30	FHY3p dark+DEX	0.51 >More info	0.49 >More info	FHY3p dark+mock			Original data	GEO bulk
31	CabpBVR2	-0.50 >More info	-0.49 >More info	WT			Original data	GEO bulk
32	GST NPP1 4 h (leaf)	-0.42 >More info	-0.57 >More info	Mock 4 h (leaf)			Original data	Elicitor treatments
33	WT light	0.49 >More info	0.50 >More info	WT dark			Original data	GEO bulk
34	estradiol induced LEC1	-0.50 >More info	-0.48 >More info	control			Original data	GEO bulk
35	Estradiol4 days	-0.50 >More info	-0.48 >More info	Col			Original data	GEO bulk
36	shoot control pKAT1	0.62 >More info	0.35 >More info	shoot control total			Original data	GEO bulk
37	Flagellin 4 h (leaf)	-0.47 >More info	-0.50 >More info	Mock 4 h (leaf)			Original data	Elicitor treatments
38	hrcC	-0.47 >More info	-0.50 >More info	MgCl2	5x10^7 cfu/ml DC3000 hrcC mutant		Original data	GEO bulk
39	mpk6-ko Flg22 4h	-0.45 >More info	-0.51 >More info	mpk6-ko H2O 4h			Original data	GEO bulk
40	MPK6 ox Shoot Hypoxia	0.43 >More info	0.53 >More info	WT Shoot Normoxia (mock)	Hypoxia	Shoot	Original data	GEO bulk
41	cop1 Seedling Dark	0.42 >More info	0.54 >More info	WT Seedling Dark			Original data	GEO bulk
42	col-5 DC3000-avrRpm 4h	-0.50 >More info	-0.45 >More info	col-5 MgCl2 4h		Whole leaf	Original data	GEO bulk
43	Shoot apex inflorescence (after bolting)	0.30 >More info	0.65 >More info	Control for tissue data			Original data	Developmental series; organs / tissues at different ages
44	Laer Flg22 2h	-0.45 >More info	-0.50 >More info	Laer Control		leaf discs	Original data	GEO bulk
45	erf104-ko Flg22 4h	-0.56 >More info	-0.37 >More info	erf104-ko H2O 4h			Original data	GEO bulk
46	seedlings protease IV	-0.40 >More info	-0.52 >More info	seedlings nontreated control		whole seedling	Original data
47	PAHs stress	-0.62 >More info	-0.30 >More info	exp control	phenanthrene	whole plants	Original data	GEO bulk
48	Ws seedlings	-0.52 >More info	-0.39 >More info	ged1 seedlings			Original data	GEO bulk
49	ged1 seedlings	0.52 >More info	0.39 >More info	Ws seedlings			Original data	GEO bulk
50	pnp1-1 1wk +P	-0.56 >More info	-0.33 >More info	WT 1wk +P	Full nutrient medium (+P)	seedlings without roots	Original data	GEO bulk
51	miR393 0h	0.33 >More info	0.56 >More info	WT 0h		Leaf tissue	Original data	GEO bulk
52	CeO2 germinant	0.23 >More info	0.66 >More info	Millipore Water germinant	CeO2	seedling	Original data
53	ASL9-ox	0.56 >More info	0.32 >More info	WT		aerial parts of seedlings	Original data	GEO bulk
54	phyABCDE Dark	-0.50 >More info	-0.38 >More info	WT Dark	Dark	whole seedling	Original data	GEO bulk
55	phyABCDE Rc50	0.52 >More info	0.36 >More info	phyABCDE Dark	red light	whole seedling	Original data	GEO bulk
56	WT 2-4h Xanthomonas	-0.26 >More info	-0.62 >More info	WT T0			Original data	GEO bulk
57	csn5 (csn5a-2 csn5b) light	-0.66 >More info	-0.21 >More info	WT light			Original data	GEO bulk
58	hrpA fliC 7h	-0.36 >More info	-0.51 >More info	Mock 7h	hrpA fliC		Original data	GEO bulk
59	hsfa1 quadruple mutant	-0.54 >More info	-0.32 >More info	WT (Col-0)		whole seedling	Original data	GEO bulk
60	WT Red light 18h	0.50 >More info	0.36 >More info	WT Dark 18h		deetiolated seedling	Original data	GEO bulk
61	JMJ24 knockout	-0.61 >More info	-0.24 >More info	WT			Original data	GEO bulk
62	phr1 Shoot-Pi	0.51 >More info	0.33 >More info	WT Root-Pi		shoots	Original data	GEO bulk
63	E.coli 0157 H7 7h	-0.29 >More info	-0.54 >More info	Mock 7h	E.coli 0157 H7		Original data	GEO bulk
64	IRP1-OE-Fe--shoot	-0.24 >More info	-0.59 >More info	COL-0-Fe--shoot		shoot	Original data
65	atmyc2 cop1 Seedling Dark	0.51 >More info	0.31 >More info	WT Seedling Dark			Original data	GEO bulk
66	SA 4mM	-0.28 >More info	-0.54 >More info	untreated	4 weeks old at time of treatment	whole leaf	Original data	GEO bulk
67	Col ozone 3h	-0.18 >More info	-0.64 >More info	Col clean-air 3h	ozone		Original data	GEO bulk
68	pab nonpolysome	-0.28 >More info	-0.54 >More info	WT nonpolysome		seedling shoot/aerial seedling	Original data
69	Mutant siz1-3 (Drought)	-0.55 >More info	-0.26 >More info	Col-0 (Drought)			Original data	GEO bulk
70	siz1-3 drought	-0.55 >More info	-0.26 >More info	Col-0 drought			Original data	GEO bulk
71	gct-2 mutant 9-day-old seedlings above-ground portions	-0.55 >More info	-0.25 >More info	WT 7-day-old seedlings above-ground portions		seedling	Original data
72	AgNO3 3 h	-0.11 >More info	-0.69 >More info	Mock 3 h			Original data	Effect of ethylene inhibitors on seedlings
73	flu over-tAPX	-0.28 >More info	-0.50 >More info	WT Col			Original data	GEO bulk
74	csn3-1 light	-0.60 >More info	-0.16 >More info	WT light			Original data	GEO bulk
75	dor drought	-0.21 >More info	-0.55 >More info	WT drought			Original data	GEO bulk
76	dorn1-1 Root MES buffer 30 min	0.53 >More info	0.22 >More info	Col-0 Root MES buffer 30 min		Roots of 5 day-old seedlings	Original data
77	csn4-1 dark	-0.62 >More info	-0.13 >More info	WT light			Original data	GEO bulk
78	vte2-1 3d vernalization	-0.22 >More info	-0.53 >More info	WT 3d vernalization			Original data	GEO bulk
79	Seedling KUA1-IOX est	-0.19 >More info	-0.56 >More info	Seedling KUA1-IOX mock			Original data
80	sicy-192 gun1-101 cotyledons	-0.50 >More info	-0.24 >More info	WT cotyledons		cotyledons	Original data
81	Cocultivation 8 hrs leaf	0.61 >More info	0.12 >More info	Mock cocultivation 8 hrs leaf		Leaf	Original data
82	35S-MIF1 dark grown	-0.58 >More info	-0.15 >More info	Dark-grown WT control			Original data	GEO bulk
83	AB	-0.51 >More info	-0.22 >More info	COL		seedling	Original data
84	DC3000 hrcC 2 h (leaf)	-0.18 >More info	-0.55 >More info	Mock 2 h (leaf)			Original data	Pseudomonas syringae pv. tomato or pv. phaseolicola infection
85	GST 4 h (leaf)	-0.16 >More info	-0.56 >More info	Mock 4 h (leaf)			Original data	Elicitor treatments
86	TNT-seedlings	-0.04 >More info	-0.68 >More info	DMF-control-seedlings	TNT-treated-seedlings	whole plant	Original data	GEO bulk
87	bZIP1ko mutant N+Light-	-0.21 >More info	-0.51 >More info	WT-sib N+Light-		whole plant	Original data	GEO bulk
88	essp4/sdg8-5 mutant	-0.52 >More info	-0.19 >More info	wild type		leaf	Original data	GEO bulk
89	ANOXIA	0.12 >More info	0.59 >More info	ANOXIA+SUCROSE			Original data	GEO bulk
90	Red Light 45min	-0.09 >More info	-0.61 >More info	White Light 45min			Original data	Light treatments
91	Elevated CO2 fully expanded leaf	-0.54 >More info	-0.14 >More info	Ambient CO2 fully expanded leaf		fully expanded leaf	Original data
92	cct-1 mutant 9-day-old seedlings above-ground portions	-0.51 >More info	-0.17 >More info	WT 7-day-old seedlings above-ground portions		seedling	Original data
93	amiRAP hypoxic	0.18 >More info	0.50 >More info	hypoxic	hypoxia		Original data	GEO bulk
94	WT roots - Fe	-0.12 >More info	-0.55 >More info	WT roots + Fe		Roots	Original data	GEO bulk
95	IAA7mII over-expressor IAA Treated	-0.02 >More info	0.69 >More info	empty vector IAA Treated			Original data	GEO bulk
96	P. infestans 6 h (leaf)	-0.51 >More info	-0.15 >More info	Mock 6 h (leaf)			Original data	Elicitor treatments
97	pvip1 pvip2 seedling	-0.64 >More info	-0.02 >More info	Col-0 seedling		seedling	Original data	GEO bulk
98	2hr continuous KNO3 ECR cell	-0.14 >More info	-0.52 >More info	2hr KCl control ECR cell		Epidermis&Cortex root cells	Original data	GEO bulk
99	WT (Ler) CK25	0.13 >More info	0.52 >More info	WT (Ler) CK0	cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin.	tissue culture	Original data	GEO bulk
100	dde2-2 9 hpi A. brassicicola	-0.13 >More info	-0.52 >More info	Col-0 9 hpi mock		3rd-5th true leaves	Original data
101	35S:ATR1 like miR	0.08 >More info	0.55 >More info	WT for miR			Original data	GEO bulk
102	AvrRpm1 2 h (leaf)	-0.12 >More info	-0.50 >More info	Mock 2 h (leaf)			Original data	Pseudomonas syringae pv. tomato or pv. phaseolicola infection
103	vtc1-1	0.02 >More info	0.60 >More info	Col-0		whole plant	Original data	GEO bulk
104	Leaf	0.57 >More info	0.04 >More info	Control for tissue data		leaf	Original data	GEO bulk
105	seedlings-week-old RECA1-overexpressing transgenic	-0.08 >More info	-0.53 >More info	seedlings-week-old Col-0		seedlings	Original data
106	bam7 untreated	-0.08 >More info	-0.53 >More info	WT untreated	none	shoot	Original data
107	Ambient CO2 expanding leaf	0.53 >More info	0.07 >More info	Control for tissue data		expanding leaf	Original data
108	CCA14 dark early	-0.07 >More info	-0.53 >More info	Col dark early			Original data	GEO bulk
109	Elevated CO2 LIMITING N DAY	0.06 >More info	0.53 >More info	Elevated CO2 AMPLE N DAY		Youngest Most Fully Expanded Leaf	Original data
110	CCA1-ox 6am non-polysomal	0.08 >More info	0.51 >More info	WT 6am non-polysomal		aerial part	Original data
111	UV	-0.52 >More info	-0.06 >More info	WT		aerial region	Original data	GEO bulk
112	Ambient CO2 fully expanded leaf	0.53 >More info	0.05 >More info	Control for tissue data		fully expanded leaf	Original data
113	seed germinating in countinuous light 24h SL	-0.09 >More info	0.67 >More info	Control for tissue data		seed	Original data	GEO bulk
114	miR 0h	0.04 >More info	-0.61 >More info	Col 0h		Leaf	Original data	GEO bulk
115	Rsch 8h	-0.51 >More info	-0.05 >More info	Rsch CA		Leaves	Original data
116	ABI3GR +DEX +CHX	-0.05 >More info	-0.51 >More info	ABI3GR -DEX +CHX	DEX CHX	root/protoplasts	Original data	GEO bulk
117	35S:LOB-GR DEX	-0.59 >More info	0.03 >More info	Col DEX	dexamethasone	seedling	Original data	GEO bulk
118	Cauline leaves	0.50 >More info	0.05 >More info	Control for tissue data			Original data	Developmental series; organs / tissues at different ages
119	Col-7 Sucrose	-0.54 >More info	-0.00 >More info	col-7			Original data	GEO bulk
120	Heat shock optimum	-0.11 >More info	0.65 >More info	Heat shock baseline	Photosynthesis at optimum temperature	leaf first fully expanded	Original data	GEO bulk
121	msh1 albino	-0.03 >More info	-0.51 >More info	WT		aerial part	Original data	GEO bulk
122	phyABDE 4-day dark- 2 hours Rc50	-0.57 >More info	0.04 >More info	phyABDE Dark	4-day dark growth followed by 2 hours of red light	whole seedling	Original data	GEO bulk
123	frb1 mutant	0.04 >More info	-0.56 >More info	WT		whole seedling	Original data	GEO bulk
124	Blue Light 4 h	-0.07 >More info	0.58 >More info	White Light 4 h			Original data	Light treatments
125	Ler KAR1 24h seed	-0.14 >More info	0.65 >More info	Ler WATER 24h seed	KAR1	seed	Original data	GEO bulk
126	Col-0 Flg22 4h	0.15 >More info	-0.65 >More info	Col-0 H2O 4h			Original data	GEO bulk
127	in vivo pollen tube	0.51 >More info	-0.02 >More info	Control for tissue data		pollen tube	Original data	GEO bulk
128	Dex-rga(delta17) 4h GA4	-0.16 >More info	0.65 >More info	Vector 4h GA4		shoots	Original data	GEO bulk
129	Bud	0.50 >More info	-0.02 >More info	Control for tissue data		pollen grains and tubes	Original data
130	opr3 OPDA 0.5 h	0.14 >More info	-0.60 >More info	opr3 0 h			Original data	GEO bulk
131	mpk6-ko H2O 4h	0.63 >More info	-0.19 >More info	Col-0 H2O 4h			Original data	GEO bulk
132	0h hml	-0.13 >More info	0.53 >More info	0h wt			Original data
133	9m.KNO3	0.19 >More info	-0.59 >More info	To.	KNO3	14 day old Roots	Original data	GEO bulk
134	Imbibed 1 h (seed)	0.12 >More info	-0.51 >More info	Dry seed			Original data	Time course of early seed germination
135	Col BTH	-0.33 >More info	0.67 >More info	Col		rosettes	Original data	GEO bulk
136	Leafminer damaged seedlings	-0.26 >More info	0.56 >More info	Healthy seedlings		leaves	Original data	GEO bulk
137	cop1 Seedling BL+ABA	-0.54 >More info	0.25 >More info	WT Seedling BL+ABA			Original data	GEO bulk
138	Laer pretreat GA Flg22 1h	-0.42 >More info	0.71 >More info	Laer pretreat water control		leaf discs	Original data	GEO bulk
139	Col0-PsmES4326-24hpi	-0.33 >More info	0.61 >More info	Col0-mock-24hpi		leaf	Original data	GEO bulk
140	Dex-rga(delta17) 2h GA4	-0.25 >More info	0.50 >More info	Vector 4h GA4		shoots	Original data	GEO bulk
141	siliques AtHb1 control	-0.36 >More info	0.52 >More info	siliques WT control	control	silique	Original data	GEO bulk