4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on WT Rc50
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List of experiments correlated with "WT Rc50"  Help Download transcriptome of top 30
Score Experiment Correlation from
WT Rc50		 Correlation to
WT Rc50		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 WT Rc50 1.00 >More info 1.00 >More info WT Dark red light whole seedling Original data GEO bulk
2 WT(Ler) Rc50 0.99 >More info 0.99 >More info WT(Ler) Dark Original data GEO bulk
3 WT(Ler) Rc15 0.94 >More info 0.95 >More info WT(Ler) Dark Original data GEO bulk
4 phyB Dark 0.91 >More info 0.90 >More info WT(Ler) Dark Original data GEO bulk
5 phyAphyB Dark -0.91 >More info -0.90 >More info phyB Dark Original data GEO bulk
6 etiolated cop1BBX22-GFPox 0.84 >More info 0.84 >More info etiolated Col-0 whole seedlings Original data GEO bulk
7 WT Red light 18h 0.79 >More info 0.73 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
8 Light 4h polysome-bound 0.75 >More info 0.76 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
9 Light 4h steady-state 0.73 >More info 0.76 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
10 CabpBVR2 -0.73 >More info -0.75 >More info WT Original data GEO bulk
11 35SpBVR3 -0.69 >More info -0.73 >More info WT Original data GEO bulk
12 WT light 0.71 >More info 0.69 >More info WT dark Original data GEO bulk
13 WT Seedling BL 0.67 >More info 0.70 >More info WT Seedling Dark Original data GEO bulk
14 pif4pif5 mut 24h FR 0.63 >More info 0.69 >More info WT 24h FR Original data GEO bulk
15 Dark 4 h pls UV-A 5 min 0.57 >More info 0.72 >More info Dark 4 h Original data Light treatments
16 bri1-116 0.56 >More info 0.73 >More info Col seedling Original data GEO bulk
17 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.75 >More info 0.54 >More info 2d dark-grown WT seedling Original data GEO bulk
18 cop1 Seedling Dark 0.62 >More info 0.66 >More info WT Seedling Dark Original data GEO bulk
19 WT Red light 1h 0.61 >More info 0.66 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
20 csn5 (csn5a-2 csn5b) dark 0.68 >More info 0.58 >More info WT dark Original data GEO bulk
21 Dark 4 h pls RedLight 1min 0.49 >More info 0.77 >More info Dark 4 h Original data Light treatments
22 aerial organ callus inducing medium 96 h -0.57 >More info -0.66 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
23 csn4-1 mutant 0.66 >More info 0.56 >More info WT dark Original data GEO bulk
24 Dark 4 h pls UV-AB 5min 0.64 >More info 0.58 >More info Dark 4 h Original data Light treatments
25 csn3-1 dark 0.65 >More info 0.57 >More info WT dark Original data GEO bulk
26 2d dark-grown WT(Col-0)/1 hr red light 0.56 >More info 0.65 >More info 2d dark-grown WT seedling Original data GEO bulk
27 atmyc2 cop1 Seedling Dark 0.61 >More info 0.57 >More info WT Seedling Dark Original data GEO bulk
28 Light 0.5h polysome-bound 0.50 >More info 0.66 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
29 phr1 Shoot-Pi 0.69 >More info 0.47 >More info WT Root-Pi shoots Original data GEO bulk
30 Col-0 low oxygen -0.60 >More info -0.55 >More info Col-0 Original data GEO bulk
31 aerial organ callus inducing medium 48 h -0.54 >More info -0.60 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
32 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.67 >More info 0.46 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
33 Dark 44min pls RedLigh 1min 0.43 >More info 0.70 >More info Dark 45 min Original data Light treatments
34 CCA14 dark late -0.62 >More info -0.50 >More info Col dark late Original data GEO bulk
35 Red/FR Light 4 h -0.46 >More info -0.65 >More info FarRed Light 4 h Original data Light treatments
36 Dark 40 min pls UV-A 5 min 0.41 >More info 0.69 >More info Dark 45 min Original data Light treatments
37 phr1 phl1 Root-Pi -0.62 >More info -0.46 >More info WT Shoot+Pi roots Original data GEO bulk
38 aerial organ callus inducing medium 12 h -0.50 >More info -0.56 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
39 pif3 Dark 0h 0.58 >More info 0.48 >More info WT Dark 0h etiolated seedling Original data GEO bulk
40 Light 0.5h steady-state 0.38 >More info 0.68 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
41 aerial organ callus inducing medium 24h -0.52 >More info -0.53 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
42 AtGATA2ox 0.56 >More info 0.49 >More info Col seedling Original data GEO bulk
43 Col-0 Root 100 mM ATP 30 min 0.62 >More info 0.42 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
44 piffq FR 3h 0.42 >More info 0.62 >More info WT FR 3h whole seedling Original data GEO bulk
45 pif3 Dark 1h 0.55 >More info 0.48 >More info WT Dark 1h etiolated seedling Original data GEO bulk
46 35S:VND7-VP16-GR+CHX -0.36 >More info -0.66 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
47 2d red light grown pif1pif3pif4pif5 (pifq) mutant 0.62 >More info 0.39 >More info 2d red light grown WT(Col-0) seedlings Original data GEO bulk
48 DC3000 7h -0.46 >More info -0.55 >More info Mock 7h DC3000 Original data GEO bulk
49 Red Light 45min -0.36 >More info -0.64 >More info White Light 45min Original data Light treatments
50 FarRed Light 4 h 0.35 >More info 0.65 >More info White Light 4 h Original data Light treatments
51 pif4pif5 mut 1h FR 0.42 >More info 0.58 >More info WT 1h FR Original data GEO bulk
52 low R/FR mock spray -0.48 >More info -0.52 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
53 low R/FR JA spray -0.50 >More info -0.49 >More info high R/FR JA spray low R/FR JA spray Original data GEO bulk
54 phyABDE Rc50 0.45 >More info 0.54 >More info phyABDE Dark red light whole seedling Original data GEO bulk
55 FarRed Light 45min -0.33 >More info -0.65 >More info White Light 45min Original data Light treatments
56 col-5 DC3000 12h -0.38 >More info -0.60 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
57 Seedling KUA1-IOX est -0.31 >More info -0.67 >More info Seedling KUA1-IOX mock Original data
58 Laer pretreat GA+JA Flg22 1h -0.56 >More info -0.40 >More info Laer pretreat water control leaf discs Original data GEO bulk
59 Inflorescence miR-NGA -0.41 >More info -0.55 >More info Inflorescence wt Original data GEO bulk
60 Laer pretreat GA+JA Flg22 2h -0.53 >More info -0.42 >More info Laer pretreat water control leaf discs Original data GEO bulk
61 gul2-1 mutant -0.63 >More info -0.32 >More info WT 7 day-old whole seedlings Original data
62 Blue Light 4 h 0.25 >More info 0.69 >More info White Light 4 h Original data Light treatments
63 tt4 0.36 >More info 0.56 >More info WT aerial region Original data GEO bulk
64 2hr continuous KNO3 ECR cell -0.36 >More info -0.55 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
65 Col-7 Sucrose -0.56 >More info -0.33 >More info col-7 Original data GEO bulk
66 Red Light 4 h -0.38 >More info -0.51 >More info White Light 4 h Original data Light treatments
67 Col-0 low R/FR -0.34 >More info -0.54 >More info Col-0 high R/FR low R/FR seedlings Original data GEO bulk
68 gun1-1 +lincomycin 0.29 >More info 0.59 >More info Col-0 +lincomycin Original data GEO bulk
69 etiolated cop1 0.82 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
70 Laer pretreat GA+JA Flg22 0h -0.53 >More info -0.32 >More info Laer pretreat water control leaf discs Original data GEO bulk
71 col-5 hrpA 12h -0.35 >More info -0.50 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
72 SCL3 OE -0.52 >More info -0.32 >More info Col-0 whole root Original data GEO bulk
73 Differentiation 48h -0.57 >More info -0.26 >More info Differentiation 0h leaves Original data
74 AtLysM RLK1 mutant water 0.54 >More info 0.28 >More info WT water Original data GEO bulk
75 pif4pif5 mut dark 0.30 >More info 0.52 >More info WT dark Original data GEO bulk
76 Differentiation 36h -0.56 >More info -0.24 >More info Differentiation 0h leaves Original data
77 ga1-3 scl3-1 0.24 >More info 0.56 >More info ga1-3 whole root Original data
78 Cs shoot -0.11 >More info -0.68 >More info control shoot Original data GEO bulk
79 Col-0 +lincomycin -0.28 >More info -0.51 >More info Col-0 -lincomycin Original data GEO bulk
80 Laer pretreat GA Flg22 0h -0.50 >More info -0.26 >More info Laer pretreat water control leaf discs Original data GEO bulk
81 mpk6-ko H2O 4h 0.51 >More info 0.25 >More info Col-0 H2O 4h Original data GEO bulk
82 TNT-seedlings -0.14 >More info -0.62 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
83 vtc2-1 -0.23 >More info -0.53 >More info Col-0 whole plant Original data GEO bulk
84 E.coli 0157 H7 7h -0.22 >More info -0.54 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
85 gun1gun5 Norflurazon 0.24 >More info 0.52 >More info Norflurazon a herbicide (Norflurazon) seedling Original data GEO bulk
86 erf104-ko H2O 4h 0.53 >More info 0.22 >More info Col-0 H2O 4h Original data GEO bulk
87 Aerobic prt6 -0.24 >More info -0.51 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
88 WT-16ºC -0.51 >More info -0.22 >More info WT-23ºC Original data GEO bulk
89 8h-DC3000 hrpA -0.14 >More info -0.59 >More info 8h-DC3000 leaves Original data GEO bulk
90 Laer pretreat JA Flg22 2h -0.50 >More info -0.22 >More info Laer pretreat water control leaf discs Original data GEO bulk
91 piffq FR 1h 0.15 >More info 0.57 >More info WT FR 1h whole seedling Original data GEO bulk
92 Chemically -0.13 >More info -0.59 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
93 akt1-1 -0.16 >More info -0.55 >More info Ws-2 Seedlings Original data GEO bulk
94 Shoot apex inflorescence (after bolting) 0.06 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
95 Col leaf scrape 5 dpi -0.52 >More info -0.17 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
96 gul2-1 bri1-5 mutant -0.55 >More info -0.14 >More info WT 7 day-old whole seedlings Original data
97 Differentiation 24h -0.52 >More info -0.17 >More info Differentiation 0h leaves Original data
98 Col-0 35S:MBS1 HL 3h 0.16 >More info 0.52 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
99 IAA7mII over-expressor IAA Treated -0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
100 35S::ERF104 H2O 4h 0.55 >More info 0.12 >More info Col-0 H2O 4h Original data GEO bulk
101 seed germinating in countinuous light 24h SL -0.04 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
102 phyABCDE 4-day dark- 2 hours Rc50 -0.07 >More info -0.52 >More info phyABCDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
103 piffq 2d WL -0.02 >More info 0.60 >More info WT 2d WL whole seedling Original data GEO bulk
104 vtc1-1 -0.02 >More info 0.59 >More info Col-0 whole plant Original data GEO bulk
105 light 0.73 >More info -0.18 >More info dark light seedling Original data GEO bulk
106 seedling 30 min S Exp -0.01 >More info -0.53 >More info seedling -S Exp seedling Original data
107 dorn1-1 Root 100 mM ATP 30 min -0.55 >More info 0.02 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
108 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
109 siliques AtHb1 control -0.00 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
110 Col BTH -0.18 >More info 0.67 >More info Col rosettes Original data GEO bulk
111 MPK6 ox Shoot Hypoxia 0.25 >More info -0.66 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
112 Leafminer damaged seedlings -0.25 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
113 Col0-PsmES4326-24hpi -0.31 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
114 Heat shock optimum -0.36 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
115 Laer pretreat GA Flg22 1h -0.52 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk