4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Cs shoot
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List of experiments correlated with "Cs shoot"  Help Download transcriptome of top 30
Score Experiment Correlation from
Cs shoot		 Correlation to
Cs shoot		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Cs shoot 1.00 >More info 1.00 >More info control shoot Original data GEO bulk
2 PBZ -0.55 >More info -0.58 >More info none PBZ Rosette Original data GEO bulk
3 AFB1 0h -0.66 >More info -0.45 >More info Col 0h Leaf Original data GEO bulk
4 rrd1 IBA 0.81 >More info 0.29 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
5 4C 7d -0.56 >More info -0.52 >More info 4C 0h Original data GEO bulk
6 ckh2 CK0 -0.84 >More info -0.23 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
7 ubc13A -Fe 0.66 >More info 0.40 >More info Col -Fe root Original data GEO bulk
8 WT light -0.80 >More info -0.25 >More info WT dark Original data GEO bulk
9 atmyc2 cop1 Seedling BL -0.47 >More info -0.58 >More info WT Seedling BL Original data GEO bulk
10 bri1-5 mutant -0.77 >More info -0.27 >More info WT 7 day-old whole seedlings Original data
11 psad1 0.70 >More info 0.34 >More info WS rosette leaves Original data GEO bulk
12 miR393 0h -0.68 >More info -0.36 >More info WT 0h Leaf tissue Original data GEO bulk
13 AFB1 0h -0.66 >More info -0.38 >More info WT 0h Leaf tissue Original data GEO bulk
14 IAA7mII over-expressor IAA Treated 0.34 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
15 Base wox4 0.81 >More info 0.20 >More info Base Col base of stem Original data GEO bulk
16 Root wt CLE10 -0.42 >More info -0.59 >More info Root wt CLE25 root tip Original data GEO bulk
17 WT Root Hypoxia -0.46 >More info -0.55 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
18 long 10-degree- -0.39 >More info -0.59 >More info control long Original data GEO bulk
19 root - 08% oxygen - 30min -0.45 >More info -0.53 >More info root - 21% oxygen - 30min Original data GEO bulk
20 csn5 (csn5a-2 csn5b) dark -0.57 >More info -0.40 >More info WT dark Original data GEO bulk
21 opr3 OPDA 2 h -0.58 >More info -0.39 >More info opr3 0 h Original data GEO bulk
22 Mutant gh3.5-1D -0.68 >More info -0.29 >More info Col-0 Original data GEO bulk
23 tunicamycin -0.50 >More info -0.47 >More info DMF Original data GEO bulk
24 PNO8 3 h -0.60 >More info -0.37 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
25 35S::LFY -0.78 >More info -0.19 >More info Landsberg erecta seedlings Original data GEO bulk
26 rsl4 0.72 >More info 0.24 >More info Col-0 Control root Original data GEO bulk
27 root control pSultr2:2 -0.84 >More info -0.12 >More info root control total control root Original data GEO bulk
28 CCA1-ox 6am non-polysomal 0.45 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
29 root control pGL2 -0.80 >More info -0.15 >More info root control total control root Original data GEO bulk
30 oxt6:AtCPSF30 line -0.53 >More info -0.42 >More info oxt6 mutant Original data GEO bulk
31 Col-0 leaf drought -0.57 >More info -0.37 >More info Col-0 leaf water leaf Original data GEO bulk
32 4C 7d(SOIL) -0.41 >More info -0.53 >More info 4C 0h(SOIL) Original data GEO bulk
33 Pst-DC3000(hrpA)-4hpi -0.53 >More info -0.40 >More info Pst-DC3000-4hpi Original data GEO bulk
34 tga2 tga5 tga6 ctrl 0.74 >More info 0.19 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) control Original data
35 35:SUB1C 0.67 >More info 0.25 >More info WT whole seedling Original data GEO bulk
36 gai Flg22 1h -0.76 >More info -0.16 >More info Laer Flg22 1h leaf discs Original data GEO bulk
37 bbx24 in Simulated Shade 0.69 >More info 0.23 >More info WT in simulated shade shade seedling Original data
38 csn4-1 mutant -0.53 >More info -0.38 >More info WT dark Original data GEO bulk
39 root cells epidermis 140mM NaCl 8 hours -0.69 >More info -0.22 >More info root cells epidermis standard 1 hour root cells epidermis Original data
40 roottip control pSCR -0.72 >More info -0.19 >More info roottip control total control roottip Original data GEO bulk
41 root endodermis and quiescent center pH4.6 -0.69 >More info -0.22 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
42 seedling 30 min S Exp -0.61 >More info -0.30 >More info seedling -S Exp seedling Original data
43 Apex BLS>>TCP4 14DAS 0.79 >More info 0.11 >More info Apex Col 14DAS Original data GEO bulk
44 46T-CK -0.75 >More info -0.15 >More info WT-CK none Original data
45 arp6-10 12 ºC -0.58 >More info -0.32 >More info Col-0 12 ºC whole seedlings Original data GEO bulk
46 long 17-degree- -0.36 >More info -0.53 >More info control long Original data GEO bulk
47 ein2 1% sucrose 14-day-old 0.54 >More info 0.34 >More info Col-0 1% sucrose 14-day-old Original data GEO bulk
48 WT Seedling BL+ABA -0.67 >More info -0.21 >More info WT Seedling BL Original data GEO bulk
49 root cells epidermis 140mM NaCl 1 hour -0.60 >More info -0.28 >More info root cells epidermis standard 1 hour root cells epidermis Original data
50 csn3-1 dark -0.51 >More info -0.37 >More info WT dark Original data GEO bulk
51 Mutant axr3-1 (IAA) -0.59 >More info -0.29 >More info Col (IAA) Original data GEO bulk
52 aux1 mutant roots ethylene -0.81 >More info -0.06 >More info roots air Original data GEO bulk
53 sid2-avrB-6h 0.56 >More info 0.31 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
54 Uniconazole 3 h -0.54 >More info -0.33 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
55 oligomycin 1 h -0.80 >More info -0.07 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
56 root cells cortex 140mM NaCl 1 hour -0.66 >More info -0.21 >More info root cells cortex standard 1 hour root cells cortex Original data
57 des1 Na2S 0.75 >More info 0.12 >More info WT Na2S Na2S leaf Original data GEO bulk
58 xyl-grown cell culture- 1h 1mM Suc 0.54 >More info 0.32 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
59 AtLysM RLK1 mutant water -0.58 >More info -0.28 >More info WT water Original data GEO bulk
60 short 12-degree- -0.26 >More info -0.60 >More info control short Original data GEO bulk
61 35S::KLU -0.25 >More info -0.61 >More info WT Shoot Original data
62 tbf1-SA 0.53 >More info 0.32 >More info WT-SA 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
63 toc1-1-73hr -0.53 >More info -0.32 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
64 35S:RPS4 rrs1-11 T0 -0.31 >More info -0.54 >More info 35S:RPS4 T0 leaves Original data
65 root hypoxia pSCR -0.63 >More info -0.22 >More info root hypoxia total hypoxia root Original data GEO bulk
66 eds16 whole leaf 0h UI 0.71 >More info 0.14 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
67 lug3 leaves 0.50 >More info 0.34 >More info WT-leaves matured rosette leaves Original data GEO bulk
68 gh3.5-1D 48 hpi -0.65 >More info -0.19 >More info Col-0 uninoculated Original data GEO bulk
69 ATR1 OE -0.55 >More info -0.29 >More info WT for ATR1/MYB51 Original data GEO bulk
70 35SpBVR3 0.52 >More info 0.32 >More info WT Original data GEO bulk
71 afb3-1 2h KNO3 -0.33 >More info -0.51 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
72 root cells epidermis 140mM NaCl 3 hours -0.60 >More info -0.24 >More info root cells epidermis standard 1 hour root cells epidermis Original data
73 long 12-degree- -0.27 >More info -0.57 >More info control long Original data GEO bulk
74 ago1-27 -0.52 >More info -0.31 >More info Col-0 vegetative apex Original data GEO bulk
75 chl1-12 10mM NH4NO3 -0.63 >More info -0.20 >More info col 10mM NH4NO3 Root Original data
76 aba1 hypocotyl 0.58 >More info 0.25 >More info Ler hypocotyl hypocotyl Original data GEO bulk
77 GiantCell Root -0.65 >More info -0.17 >More info Control Root laser captured giant cells Original data GEO bulk
78 WT-elf18 0.51 >More info 0.31 >More info WT-mock infiltration 10 µM elf18 for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
79 E2Fa-Dpa -0.67 >More info -0.15 >More info WT Original data GEO bulk
80 abh1 -ABA -0.56 >More info -0.26 >More info Col-0 -ABA Original data GEO bulk
81 Octopus mutant DYG25 -0.67 >More info -0.14 >More info WS Original data GEO bulk
82 long 8-degree- -0.20 >More info -0.61 >More info control long Original data GEO bulk
83 sid2-1 warm 0.57 >More info 0.24 >More info WT warm entire aerial part Original data GEO bulk
84 A. thaliana-A. lyrata hybrid 0.72 >More info 0.09 >More info A. thaliana mature leaves before flowering Original data GEO bulk
85 ein2-1 +Pep2 2h 0.55 >More info 0.25 >More info WT +Pep2 2h Pep2 Original data GEO bulk
86 toc1-1-77hr -0.52 >More info -0.28 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
87 cdm1 mutant floral young floral buds 0.54 >More info 0.26 >More info WT floral yound floral buds Unopen flower buds Original data
88 Col whole leaf amplified 5 dpi -0.60 >More info -0.20 >More info Col whole leaf amplified 5d UI whole leaf Original data GEO bulk
89 35S::MBF1c 0.69 >More info 0.11 >More info control Original data GEO bulk
90 Mutant ufo-1(flower) -0.70 >More info -0.10 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
91 root longitudinal zone-3 -Fe 0.63 >More info 0.16 >More info root longitudinal zone-3 standard Original data GEO bulk
92 mbd6 mutant thaliana 10-day-old seedling -0.60 >More info -0.19 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
93 root control pSCR -0.65 >More info -0.14 >More info root control total control root Original data GEO bulk
94 CsUBC13-OE-es 0.51 >More info 0.28 >More info Col-es root Original data GEO bulk
95 WT Rc50 -0.68 >More info -0.11 >More info WT Dark red light whole seedling Original data GEO bulk
96 Cor hrpS 10h -0.55 >More info -0.24 >More info Mock 10h Cor hrpS Original data GEO bulk
97 ubc13A-es 0.61 >More info 0.18 >More info Col-es root Original data GEO bulk
98 vte1-1 3d vernalization 0.58 >More info 0.20 >More info WT 3d vernalization Original data GEO bulk
99 gai MeJA 1h -0.65 >More info -0.13 >More info Laer MeJA 1h leaf discs Original data GEO bulk
100 KO-nudx19 leaves -0.56 >More info -0.22 >More info WT leaves rosette leaves Original data
101 smg7b-1 -0.64 >More info -0.14 >More info WT whole plant Original data GEO bulk
102 seedling 1.5h after HZE atm-1 -0.78 >More info 0.00 >More info seedling day 1 unirradiated atm-1 1.5h Original data
103 root cells epidermis 140mM NaCl 20 hours -0.58 >More info -0.20 >More info root cells epidermis standard 1 hour root cells epidermis Original data
104 Rsch 1d 0.76 >More info 0.02 >More info Rsch CA Leaves Original data
105 phyB mutant 22C 10hrs 0.65 >More info 0.13 >More info L22-10hrs whole plant excluding roots Original data GEO bulk
106 Elevated CO2 LIMITING N NIGHT -0.51 >More info -0.26 >More info Elevated CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
107 ahg2-1 -0.70 >More info -0.07 >More info WT (Col) control Original data GEO bulk
108 FLIGHT TAGESB plate6 SHOOTS -0.76 >More info -0.01 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
109 leaf chr11-1chr17-1 0.61 >More info 0.16 >More info leaf Col-0 leaves Original data GEO bulk
110 roottip hypoxia pSCR -0.51 >More info -0.25 >More info roottip hypoxia total hypoxia roottip Original data GEO bulk
111 root hypoxia pGL2 -0.58 >More info -0.18 >More info root hypoxia total hypoxia root Original data GEO bulk
112 wavy -0.66 >More info -0.10 >More info WT Original data GEO bulk
113 BI-1-30min IAA 0.57 >More info 0.19 >More info BI-1-0h IAA whole plant Original data GEO bulk
114 ein2-1 +elf18 10h 0.54 >More info 0.22 >More info WT +elf18 10h elf18 Original data GEO bulk
115 WT(Ler) Rc50 -0.63 >More info -0.13 >More info WT(Ler) Dark Original data GEO bulk
116 wnk8-2 untreated -0.60 >More info -0.16 >More info Col-0 untreated seedlings Original data GEO bulk
117 35S:MYB28 like miR -0.79 >More info 0.04 >More info WT for miR Original data GEO bulk
118 WT Atum 1h -0.70 >More info -0.05 >More info WT 0h Leaf tissue Original data GEO bulk
119 aox1a:rpoTmp untreated -0.64 >More info -0.11 >More info WT(Col0) untreated (control aox1a:rpoTmp) leaf Original data
120 Myzus persicae saliva -0.55 >More info -0.20 >More info Control Original data GEO bulk
121 aphid saliva treated -0.55 >More info -0.20 >More info control aphid saliva treated leaves Original data GEO bulk
122 spx1 spx2 resupplied Pi 4h 0.51 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
123 root control pSUC2 -0.64 >More info -0.11 >More info root control total control root Original data GEO bulk
124 dicamba -0.52 >More info -0.23 >More info WT mock whole seedling Original data GEO bulk
125 abi4-102 (I) -0.67 >More info -0.07 >More info Col (I) rosette Original data GEO bulk
126 BI-1-1h IAA 0.64 >More info 0.10 >More info BI-1-0h IAA whole plant Original data GEO bulk
127 Full AC2 T1 0.55 >More info 0.19 >More info AC2 and AC2del control T1 one day post infusion with Agrobacterium containing full-length CaLCuV AC2 Arabidopsis rosette leaves Original data
128 Genotoxic Stress 3 h (root) 0.51 >More info 0.23 >More info Stress mock 3 h (root) Original data Stress treatments
129 cs26 short-day -0.51 >More info -0.23 >More info Leaves-WT-SD leaf Original data GEO bulk
130 Mutant gh3.5-1D (AvrRpt2) -0.50 >More info -0.24 >More info Col-0 (AvrRpt2) Original data GEO bulk
131 root control pPEP -0.56 >More info -0.17 >More info root control total control root Original data GEO bulk
132 OE-HRA1 2HS  0.52 >More info 0.21 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
133 root cells endodermis 140mM NaCl 20 hours -0.66 >More info -0.07 >More info root cells endodermis standard 1 hour root cells endodermis Original data
134 wnk8-3 untreated -0.62 >More info -0.11 >More info Col-0 untreated seedlings Original data GEO bulk
135 root cells endodermis 140mM NaCl 48 hours -0.67 >More info -0.05 >More info root cells endodermis standard 1 hour root cells endodermis Original data
136 Col-0 4C -0.59 >More info -0.13 >More info Col-0 22C seeds Original data GEO bulk
137 oas-a1.1 Cd 18h -0.60 >More info -0.12 >More info Cd 18h root Root Original data GEO bulk
138 WT(Ler) Rc15 -0.59 >More info -0.13 >More info WT(Ler) Dark Original data GEO bulk
139 Atwrky40 0.58 >More info 0.14 >More info Col0 none leaf Original data GEO bulk
140 Van 0.50 >More info 0.22 >More info Col-0 Original data GEO bulk
141 Red Light 45min 0.22 >More info 0.50 >More info White Light 45min Original data Light treatments
142 GA4 3 h (ga1 seed) -0.54 >More info -0.17 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
143 seedlings +5AC -0.59 >More info -0.12 >More info control seedlings 10-day old whole seedling Original data GEO bulk
144 ceh1 mutant -0.61 >More info -0.10 >More info Parent line Original data
145 CAX1/CAX3 mutant -0.75 >More info 0.04 >More info Col whole plant Original data GEO bulk
146 15m.KNO3 -0.53 >More info -0.18 >More info To. KNO3 14 day old Roots Original data GEO bulk
147 camta1-2 0.51 >More info 0.20 >More info Col-0-WT Original data GEO bulk
148 Octopus overexpressor 35SDYG25 -0.65 >More info -0.06 >More info WS Original data GEO bulk
149 A. thaliana-A. halleri hybrid 0.57 >More info 0.14 >More info A. thaliana mature leaves before flowering Original data GEO bulk
150 WT (Col-0) inflorescence well-watered day 10 -0.60 >More info -0.11 >More info WT (Col-0) inflorescence well-watered day 0 Unopen flower buds Original data GEO bulk
151 oas-a1.1 shoot -0.59 >More info -0.12 >More info WT-Untreated Shoot Original data GEO bulk
152 Laer pretreat GA Flg22 1h 0.00 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
153 HSP90 Reduced RNAi-A3 0.53 >More info 0.17 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
154 ALC Toc1 light-light EtOH -0.65 >More info -0.05 >More info Col light-light EtOH 2.5% ethanol Original data GEO bulk
155 abi4 vtc2 (I) -0.65 >More info -0.05 >More info Col (I) rosette Original data GEO bulk
156 -Sulfate 24 h -0.16 >More info -0.54 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
157 Triazolopyrimidine EC50 -0.57 >More info -0.13 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
158 cat2-2; harvested 8h continiously maintained in
high CO2;		 0.61 >More info 0.09 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
159 Col light-light EtOH 0.62 >More info 0.08 >More info Col light-light Mock 2.5% ethanol Original data GEO bulk
160 Mutant ap3-6(flower) -0.67 >More info -0.02 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
161 shoot-10 μM DEX- 6 hr -0.73 >More info 0.04 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
162 clf-28 swn-7 -0.59 >More info -0.10 >More info Col whole plant Original data GEO bulk
163 aln-1 0.63 >More info 0.06 >More info Col-0 Aerial part of seedlings Original data
164 calcicole ecotype Cal-0 -0.67 >More info -0.01 >More info Col-4 1 mM CaCl2 Original data GEO bulk
165 vtc2 zygotic embryo -0.64 >More info -0.04 >More info WT zygotic embryo zygotic embryo Original data GEO bulk
166 dsr1 SA Treated -0.60 >More info -0.08 >More info SA Whole seedling Original data GEO bulk
167 lug3 flowers -0.61 >More info -0.07 >More info WT-flowers flowers Original data GEO bulk
168 Rsch 3d 0.59 >More info 0.09 >More info Rsch CA Leaves Original data
169 seedlings-week-old RECA1-overexpressing
transgenic		 -0.62 >More info -0.06 >More info seedlings-week-old Col-0 seedlings Original data
170 gul2-1 mutant -0.57 >More info -0.11 >More info WT 7 day-old whole seedlings Original data
171 short 17-degree- -0.11 >More info -0.57 >More info control short Original data GEO bulk
172 Mutant lfy-12(flower) -0.68 >More info 0.01 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
173 SCL3 OE 0.56 >More info 0.11 >More info Col-0 whole root Original data GEO bulk
174 inhibitor A Treated -0.54 >More info -0.13 >More info Negative Control Original data GEO bulk
175 root cells epidermis 140mM NaCl 48 hours -0.55 >More info -0.12 >More info root cells epidermis standard 1 hour root cells epidermis Original data
176 des1 water -0.52 >More info -0.15 >More info WT water water leaf Original data GEO bulk
177 OH1 -0.56 >More info -0.11 >More info Col-0 leaves Original data GEO bulk
178 phr1 Shoot-Pi -0.57 >More info -0.10 >More info WT Root-Pi shoots Original data GEO bulk
179 Primisulfuron EC50 -0.52 >More info -0.14 >More info Carrier (primisulfuron) Original data GEO bulk
180 php 0.54 >More info 0.12 >More info WT Original data GEO bulk
181 ape2 high light -0.65 >More info -0.01 >More info Ws-2 high light Original data GEO bulk
182 piffq 2d WL -0.50 >More info -0.16 >More info WT 2d WL whole seedling Original data GEO bulk
183 roottip control pWOL -0.62 >More info -0.04 >More info roottip control total control roottip Original data GEO bulk
184 cpr5 -0.64 >More info -0.02 >More info WT seedling Original data GEO bulk
185 wrky33 mock 0.53 >More info 0.13 >More info WT mock 14 hour mock control leaves Original data
186 FILp cells -0.52 >More info -0.14 >More info Protoplast Induced Original data GEO bulk
187 apum23 -0.58 >More info -0.08 >More info WT (Col-3) aerial parts Original data GEO bulk
188 Col ozone 2d -0.57 >More info -0.09 >More info Col clean-air 2d ozone Original data GEO bulk
189 Col whole leaf 5dpi -0.69 >More info 0.03 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
190 root cells epidermis 140mM NaCl 32 hours -0.51 >More info -0.14 >More info root cells epidermis standard 1 hour root cells epidermis Original data
191 root cells cortex 140mM NaCl 48 hours -0.60 >More info -0.05 >More info root cells cortex standard 1 hour root cells cortex Original data
192 root cells endodermis 140mM NaCl 32 hours -0.55 >More info -0.10 >More info root cells endodermis standard 1 hour root cells endodermis Original data
193 opr3 JA 22 h 0.56 >More info 0.09 >More info opr3 0 h Original data GEO bulk
194 Ler 10C long-day 0.52 >More info 0.12 >More info Ler 20C long-day seeds Original data GEO bulk
195 camta2/3 warm -0.65 >More info 0.01 >More info WT warm entire aerial part Original data GEO bulk
196 Col-0 +ABA LF 0.50 >More info 0.14 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
197 camta1/3 warm -0.59 >More info -0.05 >More info WT warm entire aerial part Original data GEO bulk
198 toc1-1-81hr -0.59 >More info -0.05 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
199 QC pSCR(QC pSCRBRI1) 0h BL -0.55 >More info -0.09 >More info WR 35S 0h BL brassinosteroid root Original data
200 coi1-PsmES4326-24hpi -0.61 >More info -0.03 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
201 aba3-1 -0.57 >More info -0.07 >More info wt Original data GEO bulk
202 dyt1 -0.57 >More info -0.07 >More info WT anther Original data GEO bulk
203 A. lyrata 0.57 >More info 0.07 >More info A. thaliana mature leaves before flowering Original data GEO bulk
204 root hypoxia pSUC2 -0.59 >More info -0.04 >More info root hypoxia total hypoxia root Original data GEO bulk
205 Col-0-1h IAA 0.51 >More info 0.12 >More info Col-0-0h IAA whole plant Original data GEO bulk
206 FHY3p far-red+DEX -0.55 >More info -0.08 >More info FHY3p far-red+mock Original data GEO bulk
207 miR mutant (higher order mutant) -0.61 >More info -0.02 >More info col control (higher order mutant) Original data GEO bulk
208 gul2-1 bri1-5 mutant -0.60 >More info -0.03 >More info WT 7 day-old whole seedlings Original data
209 CHLM overexpression 0.53 >More info 0.10 >More info Col-0 estr green tissue Original data GEO bulk
210 root cells endodermis 140mM NaCl 8 hours -0.56 >More info -0.06 >More info root cells endodermis standard 1 hour root cells endodermis Original data
211 glk1 glk2 GLK1-GR +DEX 4h -0.55 >More info -0.07 >More info glk1 glk2 GLK1-GR mock 4h dexamethasone whole seedlings Original data GEO bulk
212 roottip control p35S -0.52 >More info -0.10 >More info roottip control total control roottip Original data GEO bulk
213 seedling 1.5h after HZE WT -0.59 >More info -0.03 >More info seedling day 1 unirradiated WT 1.5h Original data
214 UV Stress 24 h (shoot) -0.63 >More info 0.01 >More info Stress mock 24 h (shoot) Original data Stress treatments
215 scrm-D:mute -0.61 >More info -0.01 >More info Col-0 WT whole seedling Original data GEO bulk
216 Atape2 low light -0.58 >More info -0.04 >More info Control for tissue data shoot apical meristem Original data GEO bulk
217 S15-118 -0.61 >More info -0.01 >More info wt Original data GEO bulk
218 WUSp cells -0.54 >More info -0.07 >More info Protoplast Induced Original data GEO bulk
219 dcl1-7 -0.55 >More info -0.06 >More info Ler Original data GEO bulk
220 root cap pGL2(QC pSCRBRI1) 0h BL -0.57 >More info -0.04 >More info WR 35S 0h BL brassinosteroid root Original data
221 Col-0 48 hpi -0.52 >More info -0.09 >More info Col-0 uninoculated Original data GEO bulk
222 (Col-0)+100 uM As -0.61 >More info -0.00 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
223 aphid infested 0.53 >More info 0.08 >More info control aphid infested Leaves Original data GEO bulk
224 aphid infested 0.53 >More info 0.08 >More info CTR Original data GEO bulk
225 3 hour 5929745 0.50 >More info 0.11 >More info 3 hour control (no chemical ) Original data GEO bulk
226 KAN1 -0.54 >More info -0.06 >More info Control for tissue data shoot apical meristem Original data GEO bulk
227 root cells cortex 140mM NaCl 32 hours -0.53 >More info -0.07 >More info root cells cortex standard 1 hour root cells cortex Original data
228 hira-protoplast -0.51 >More info -0.09 >More info WT-protoplast protoplast Original data
229 Cor 24h -0.57 >More info -0.03 >More info Mock 24h Cor Original data GEO bulk
230 ERF96OE -0.61 >More info 0.01 >More info WT leaf Original data
231 roottip hypoxia pWOL -0.54 >More info -0.05 >More info roottip hypoxia total Original data GEO bulk
232 Mutant clv3-7(shoot apex) -0.53 >More info -0.06 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
233 Col-0 mbs1-1 HL 3h 0.56 >More info 0.03 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
234 coi1 -0.69 >More info 0.10 >More info Col-0 Leaves Original data GEO bulk
235 pif4pif5 mut 24h FR 0.57 >More info 0.02 >More info WT 24h FR Original data GEO bulk
236 erf115ko roottip5days 0.52 >More info 0.06 >More info Col-0 roottip5days root tips Original data
237 eds16 laser microdissected 5 dpi 0.56 >More info 0.02 >More info Col laser microdissected 5 dpi LMD leaf epidermal and mesophyll cells Original data GEO bulk
238 ubp1c-1/35S:FLAG-UBP1C IP-RNA
2hHypoxia+20&9;Reoxy		 0.50 >More info 0.08 >More info ubp1c-1/35S:FLAG-UBP1C Total-RNA
2hHypoxia+20&9;Reoxy		 2 h hypoxia +2' reoxy seedling Original data
239 CLV3p cells -0.50 >More info -0.08 >More info Protoplast Induced Original data GEO bulk
240 root epidermis and lateral root cap 40 mM NaCl 0.61 >More info -0.03 >More info root epidermis and lateral root cap Original data GEO bulk
241 sicy-192 gun1-101 cotyledons -0.61 >More info 0.03 >More info WT cotyledons cotyledons Original data
242 WT Atum 2h -0.68 >More info 0.11 >More info WT 0h Leaf tissue Original data GEO bulk
243 mbd4 mutant thaliana 10-day-old seedling -0.54 >More info -0.03 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
244 cat2-hCO2 0.66 >More info -0.09 >More info Col0-hCO2 grown for five weeks at high CO2 concentration (3000 ppm) in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
245 AgNO3 3 h -0.55 >More info -0.02 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
246 A. halleri highZn-root 0.51 >More info 0.06 >More info A. petraea highZn-root Original data GEO bulk
247 QC pSCR 0h BL -0.50 >More info -0.07 >More info WR 35S 0h BL brassinosteroid root Original data
248 WT Shoot Hypoxia -0.03 >More info -0.54 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
249 ein5-1 ski2-3 -0.61 >More info 0.04 >More info Col-0 aerial tissue Original data
250 Mutant ap1-15(flower) -0.62 >More info 0.05 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
251 CLO 4mM -0.74 >More info 0.18 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
252 SND1 12h 0.56 >More info 0.00 >More info wt 12h Original data GEO bulk
253 eds16 whole leaf 5dpi 0.54 >More info 0.02 >More info Col whole leaf 5dpi whole leaf Original data GEO bulk
254 vtc2 (I) -0.52 >More info -0.04 >More info Col (I) rosette Original data GEO bulk
255 RPL18 TuMV inoculated total RNA -0.50 >More info -0.06 >More info mock inoculated total RNA PO Original data GEO bulk
256 Red/FR Light45min 0.06 >More info 0.50 >More info FarRed Light 45min Original data Light treatments
257 camta3-2 -0.58 >More info 0.02 >More info WT Original data GEO bulk
258 spx1 spx2 no Pi 0.51 >More info 0.04 >More info WT no Pi seedlings Original data
259 chito-octamer -0.53 >More info -0.02 >More info Col Mock Original data GEO bulk
260 rao1-1 0.61 >More info -0.06 >More info Col-Luc WT mock water control treatment 3 hours whole green tissue Original data GEO bulk
261 siliques WT hypoxia -0.56 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
262 Mutant siz1-3 (Drought) -0.55 >More info -0.00 >More info Col-0 (Drought) Original data GEO bulk
263 essp3/brm5 mutant 0.50 >More info 0.05 >More info WT (Pro-beta-CG;GUS) Original data GEO bulk
264 siz1-3 drought -0.55 >More info -0.00 >More info Col-0 drought Original data GEO bulk
265 Leafminer systemically damaged thaliana seedlings -0.65 >More info 0.10 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
266 Shoot dark control 7h -0.59 >More info 0.04 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
267 35S:RPS4 eds1-2 24h 0.58 >More info -0.03 >More info 35S:RPS4 24h leaves Original data
268 Blue Light 4 h 0.02 >More info -0.57 >More info White Light 4 h Original data Light treatments
269 roots bhlh100/101 0uM Fe -0.51 >More info -0.03 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
270 pmr5 pmr6 -0.50 >More info -0.04 >More info Col-0 Original data GEO bulk
271 Col-0-3h IAA 0.52 >More info 0.02 >More info Col-0-0h IAA whole plant Original data GEO bulk
272 250uM KNO3 20min shoots 0.62 >More info -0.08 >More info 250uM KCL 20min shoots shoots Original data GEO bulk
273 HDG4 -0.50 >More info -0.04 >More info Control for tissue data shoot apical meristem Original data GEO bulk
274 Transgenic LEC2GR Seedling 4h Dex -0.50 >More info -0.03 >More info WT WS-O Seedling 4h Dex Original data GEO bulk
275 eds16 whole leaf 1dpi 0.60 >More info -0.07 >More info Col whole leaf 1dpi whole leaf Original data GEO bulk
276 Full C2 T3 0.63 >More info -0.10 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
277 camta1/2/3 warm -0.56 >More info 0.03 >More info WT warm entire aerial part Original data GEO bulk
278 WT NAA 2h -0.80 >More info 0.27 >More info WT 0h Leaf tissue Original data GEO bulk
279 35S::Zat12 -0.50 >More info -0.03 >More info WT Original data GEO bulk
280 HMG -0.50 >More info -0.03 >More info Control for tissue data shoot apical meristem Original data GEO bulk
281 pap1-D/tt4 -0.69 >More info 0.16 >More info Col-0 aerial part Original data
282 lht1 untreated -0.58 >More info 0.05 >More info WT untreated untreated leaf Original data GEO bulk
283 camta3-1 -0.58 >More info 0.06 >More info WT Original data GEO bulk
284 LAS -0.50 >More info -0.02 >More info Control for tissue data shoot apical meristem Original data GEO bulk
285 rpoTmp(line) untreated -0.56 >More info 0.04 >More info WT(Col0) untreated (control rpoTmp) leaf Original data
286 Col-0 V. longisporum-inoculated 48 hpi -0.52 >More info -0.00 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
287 Col whole leaf 7dpi -0.63 >More info 0.11 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
288 nas4x leaves - Fe 0.55 >More info -0.03 >More info WT leaves - Fe Leaves Original data GEO bulk
289 Col-0 norflurazon -0.58 >More info 0.07 >More info Col-0 control Original data GEO bulk
290 gai Control -0.57 >More info 0.06 >More info Laer Control leaf discs Original data GEO bulk
291 slr-1 0h NAA -0.50 >More info -0.01 >More info Col-0 0h NAA Original data GEO bulk
292 8h-DC3000 avrRpm1 -0.50 >More info -0.01 >More info 8h-DC3000 leaves Original data GEO bulk
293 S14-150 -0.62 >More info 0.12 >More info wt Original data GEO bulk
294 Shoot submergence 7h -0.50 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
295 250uM K-nitrate 20min roots -0.50 >More info -0.00 >More info 250uM KCl 20min roots Roots Original data GEO bulk
296 penta MeJA 1h 0.52 >More info -0.02 >More info Laer MeJA 1h leaf discs Original data GEO bulk
297 nar1-4/- -0.60 >More info 0.10 >More info WT whole seedling Original data GEO bulk
298 oas-a1.1 root 0.63 >More info -0.13 >More info WT-Untreated Root Original data GEO bulk
299 miR393 flg22 2h -0.57 >More info 0.07 >More info WT 0h Leaf tissue Original data GEO bulk
300 C58 3hpi -0.54 >More info 0.05 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
301 short 10-degree- 0.01 >More info -0.50 >More info control short Original data GEO bulk
302 columella auxin -0.53 >More info 0.05 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
303 ABA JA 24h 0.54 >More info -0.06 >More info EtOH 24h 24hr Original data GEO bulk
304 Night Time Treatment 0.62 >More info -0.14 >More info Night Time Control 1hr white light pulse aerial rosette Original data
305 IAA7mII over-expressor mock 0.51 >More info -0.03 >More info empty vector mock Original data GEO bulk
306 ft-1 10C long-day -0.50 >More info 0.02 >More info Ler 10C long-day seeds Original data GEO bulk
307 msh1 albino -0.51 >More info 0.04 >More info WT aerial part Original data GEO bulk
308 root cortex 40 mM NaCl 0.60 >More info -0.13 >More info root cortex Original data GEO bulk
309 GRX-overexpression seedlings NaCl 0.62 >More info -0.15 >More info WT seedlings NaCl Seedlings Original data GEO bulk
310 WT Col-0 Bgh inoculated -0.50 >More info 0.03 >More info WT Col-0 Un-inoculated Original data GEO bulk
311 Col0-PsmES4326-24hpi -0.14 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
312 bak1-3 untreated -0.53 >More info 0.07 >More info WT untreated untreated Original data GEO bulk
313 Mutant siz1-3 -0.52 >More info 0.06 >More info Col-0 Original data GEO bulk
314 siz1-3 control -0.52 >More info 0.06 >More info Col-0 control Original data GEO bulk
315 35S::RSL4 0.60 >More info -0.14 >More info Col-0 Control root Original data GEO bulk
316 apl 0.55 >More info -0.10 >More info WT phloem Original data
317 sav1-1 shade -0.58 >More info 0.13 >More info Col-0 shade seedlings Original data GEO bulk
318 Shoot submergence 24h -0.53 >More info 0.09 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
319 seed germinating in countinuous light 24h SL -0.23 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
320 elf3-7-16ºC 0.64 >More info -0.20 >More info WT-16ºC Original data GEO bulk
321 Cd 18h root 0.53 >More info -0.10 >More info WT-Untreated Root Original data GEO bulk
322 tmm1-inflorescence-tips 0.52 >More info -0.09 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
323 root columella root cap pH4.6 -0.51 >More info 0.08 >More info root columella root cap pH5.7 Original data GEO bulk
324 35S-MIF1 light grown -0.50 >More info 0.07 >More info Light-grown WT control Original data GEO bulk
325 atgsnor1-3-avrB-6h -0.55 >More info 0.13 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
326 root - 04% oxygen - 2h 0.15 >More info -0.57 >More info root - 21% oxygen - 2h Original data GEO bulk
327 GV3101 6dpi -0.55 >More info 0.14 >More info Reference 6dpi wounded inflorescence stalk segments Original data GEO bulk
328 pif1-2 dark -0.59 >More info 0.18 >More info Wt dark Original data GEO bulk
329 Mutant pif1-2 (Dark etiol) -0.59 >More info 0.18 >More info Col-0 (Dark etiol) Original data GEO bulk
330 tt4 -0.59 >More info 0.18 >More info Col-0 aerial part Original data
331 WT +elf18 10h -0.50 >More info 0.10 >More info WT untreated elf18 Original data GEO bulk
332 iron minus 1 h 0.56 >More info -0.17 >More info iron +1 h root Original data GEO bulk
333 t-zeatin 0.5 h -0.21 >More info 0.60 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
334 xyl-grown cell culture- 1h 1mM Fru 0.54 >More info -0.16 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
335 Rose Bengal 0.5 uM -0.50 >More info 0.13 >More info Control RB and PER Rose Bengal Original data
336 WT NAA 1h -0.51 >More info 0.17 >More info WT 0h Leaf tissue Original data GEO bulk
337 AsAKiin11 T1 -0.50 >More info 0.17 >More info C2 C2del and (As)AKiin11 control T1 one day post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
338 Mutant ag-12(shoot apex) 0.51 >More info -0.19 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
339 Col BTH -0.36 >More info 0.67 >More info Col rosettes Original data GEO bulk
340 root - 01% oxygen - 2h 0.23 >More info -0.53 >More info root - 21% oxygen - 2h Original data GEO bulk
341 phr1 phl1 Shoot-Pi -0.53 >More info 0.24 >More info WT Shoot-Pi shoots Original data GEO bulk
342 HARAP aerobic 0.54 >More info -0.26 >More info WT aerobic aerobic Original data GEO bulk
343 Shoot apex inflorescence (after bolting) -0.37 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
344 Heat shock optimum -0.37 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
345 bri1-116 -0.45 >More info 0.73 >More info Col seedling Original data GEO bulk
346 siliques AtHb1 control -0.30 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
347 Leafminer damaged seedlings -0.41 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
348 Polysomal RNA 35S:HF-RPL18 -0.65 >More info 0.56 >More info Polysomal RNA csp1 12h non-stress rosettes Original data GEO bulk
349 phyABCDE Rc50 0.54 >More info -0.49 >More info phyABCDE Dark red light whole seedling Original data GEO bulk