4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on phyABDE Rc50
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List of experiments correlated with "phyABDE Rc50"  Help Download transcriptome of top 30
Score Experiment Correlation from
phyABDE Rc50		 Correlation to
phyABDE Rc50		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 phyABDE Rc50 1.00 >More info 1.00 >More info phyABDE Dark red light whole seedling Original data GEO bulk
2 phyABCDE Rc50 0.76 >More info 0.75 >More info phyABCDE Dark red light whole seedling Original data GEO bulk
3 Shoot submergence 24h -0.70 >More info -0.62 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
4 Shoot dark control 24h -0.64 >More info -0.65 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
5 detached inflorescences 24h -0.65 >More info -0.64 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
6 WT Red light 18h 0.64 >More info 0.64 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
7 Light 4h polysome-bound 0.65 >More info 0.60 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
8 Light 4h steady-state 0.66 >More info 0.57 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
9 Shoot dark control 7h -0.63 >More info -0.58 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
10 Day Time Treatment 0.65 >More info 0.54 >More info Day Time Control 1hr white light pulse aerial rosette Original data
11 WT Seedling BL 0.62 >More info 0.57 >More info WT Seedling Dark Original data GEO bulk
12 WT light 0.56 >More info 0.63 >More info WT dark Original data GEO bulk
13 WT (Col) glucose 0.51 >More info 0.66 >More info WT (Col) glucose seedlings Original data GEO bulk
14 Dark 4 h pls RedLight 1min 0.49 >More info 0.68 >More info Dark 4 h Original data Light treatments
15 Pseudomonas -0.55 >More info -0.59 >More info Control pseudomonas treated whole seedling Original data GEO bulk
16 cop1 Seedling Dark 0.53 >More info 0.60 >More info WT Seedling Dark Original data GEO bulk
17 low CO2 + dark -0.48 >More info -0.65 >More info normal CO2 + light Original data GEO bulk
18 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.56 >More info 0.55 >More info 2d dark-grown WT seedling Original data GEO bulk
19 pif4pif5 mut 1h FR 0.57 >More info 0.54 >More info WT 1h FR Original data GEO bulk
20 Col-0 low oxygen -0.63 >More info -0.48 >More info Col-0 Original data GEO bulk
21 Flagellin 4 h (leaf) -0.62 >More info -0.48 >More info Mock 4 h (leaf) Original data Elicitor treatments
22 Dark 4 h pls UV-A 5 min 0.48 >More info 0.61 >More info Dark 4 h Original data Light treatments
23 bri1-116 0.36 >More info 0.73 >More info Col seedling Original data GEO bulk
24 Nicotinamide-69hr -0.61 >More info -0.47 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
25 sfr3 control 0.53 >More info 0.55 >More info WT control All aerial tissue Original data GEO bulk
26 Shoot apex inflorescence (after bolting) 0.43 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
27 seedling 1.5h after HZE atm-1 -0.51 >More info -0.56 >More info seedling day 1 unirradiated atm-1 1.5h Original data
28 GST NPP1 4 h (leaf) -0.55 >More info -0.49 >More info Mock 4 h (leaf) Original data Elicitor treatments
29 low CO2 + light -0.37 >More info -0.67 >More info normal CO2 + light Original data GEO bulk
30 Nicotinamide-93hr -0.57 >More info -0.46 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
31 4d red light grown hmr-5 seedlings -0.54 >More info -0.49 >More info 4d red light grown WT(Col-0) seedlings Original data
32 WT(Ler) Rc50 0.55 >More info 0.48 >More info WT(Ler) Dark Original data GEO bulk
33 Dark 4 h pls UV-AB 5min 0.58 >More info 0.45 >More info Dark 4 h Original data Light treatments
34 csn5 (csn5a-2 csn5b) dark 0.57 >More info 0.45 >More info WT dark Original data GEO bulk
35 WT(Ler) Rc15 0.58 >More info 0.44 >More info WT(Ler) Dark Original data GEO bulk
36 aerial organ callus inducing medium 96 h -0.48 >More info -0.54 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
37 35SpBVR3 -0.46 >More info -0.56 >More info WT Original data GEO bulk
38 ahg1-1 -0.25 >More info -0.77 >More info ABA control Original data GEO bulk
39 Night Time Treatment 0.61 >More info 0.40 >More info Night Time Control 1hr white light pulse aerial rosette Original data
40 Laer treat paclobutrazol (PAC) -0.58 >More info -0.43 >More info Laer Control leaf discs Original data GEO bulk
41 csn3-1 dark 0.55 >More info 0.46 >More info WT dark Original data GEO bulk
42 sfr6 control 0.45 >More info 0.56 >More info WT control All aerial tissue Original data GEO bulk
43 WT hypoxia -0.55 >More info -0.45 >More info WT normoxia whole rosette Original data
44 pif3 Dark 0h 0.32 >More info 0.68 >More info WT Dark 0h etiolated seedling Original data GEO bulk
45 Col-0 WT HL 3h 0.60 >More info 0.39 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
46 mbd4 mutant thaliana 10-day-old seedling -0.56 >More info -0.43 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
47 WT Rc50 0.54 >More info 0.45 >More info WT Dark red light whole seedling Original data GEO bulk
48 1 h Light Total RNA 0.53 >More info 0.46 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
49 Nicotinamide-73hr -0.54 >More info -0.45 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
50 col-5 hrpA 12h -0.49 >More info -0.50 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
51 Root submergence 24h -0.57 >More info -0.41 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
52 erf104-ko Flg22 4h -0.50 >More info -0.48 >More info erf104-ko H2O 4h Original data GEO bulk
53 efr-1 +elf18 10h 0.55 >More info 0.43 >More info WT +elf18 10h elf18 Original data GEO bulk
54 camta1-2 -0.57 >More info -0.41 >More info Col-0-WT Original data GEO bulk
55 FarRed Light 4 h 0.37 >More info 0.61 >More info White Light 4 h Original data Light treatments
56 Col-0 C2H4 24h -0.46 >More info -0.52 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
57 eto1-4 + AVG -0.43 >More info -0.55 >More info eto1-4 whole seedling Original data GEO bulk
58 Dark 6h ivd -0.54 >More info -0.43 >More info 0h ivd Original data
59 leaf blade in D -0.54 >More info -0.43 >More info leaf blade in WL leaf blades Original data GEO bulk
60 Blue Light 4 h 0.39 >More info 0.58 >More info White Light 4 h Original data Light treatments
61 Red/FR Light 4 h -0.45 >More info -0.52 >More info FarRed Light 4 h Original data Light treatments
62 ptpks2 0.33 >More info 0.64 >More info Col-WT leaves Original data GEO bulk
63 Seedling KUA1-IOX est -0.40 >More info -0.56 >More info Seedling KUA1-IOX mock Original data
64 Root dark control 24h -0.58 >More info -0.38 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
65 Root submergence 7h -0.55 >More info -0.41 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
66 bbx24 in Simulated Shade -0.45 >More info -0.51 >More info WT in simulated shade shade seedling Original data
67 mutant acs9B (single mutant) -0.58 >More info -0.37 >More info col control (single mutant) Original data GEO bulk
68 petiole in FRD -0.59 >More info -0.36 >More info petiole in WL petioles Original data GEO bulk
69 seedling 24h after Gamma WT 0.51 >More info 0.44 >More info seedling day 2 unirradiated WT 24h Original data
70 phr1 phl1 Root-Pi -0.50 >More info -0.45 >More info WT Shoot+Pi roots Original data GEO bulk
71 Estradiol4 days -0.36 >More info -0.59 >More info Col Original data GEO bulk
72 tunicamycin 0.32 >More info 0.63 >More info DMF Original data GEO bulk
73 estradiol induced LEC1 -0.36 >More info -0.59 >More info control Original data GEO bulk
74 SCR-GR Time 1H Dex -0.32 >More info -0.63 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
75 Col-0 +lincomycin -0.54 >More info -0.40 >More info Col-0 -lincomycin Original data GEO bulk
76 phr1 Shoot-Pi 0.51 >More info 0.43 >More info WT Root-Pi shoots Original data GEO bulk
77 pad4-PsmES4326-24hpi 0.51 >More info 0.43 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
78 Norflurazon -0.50 >More info -0.44 >More info Col-0 Original data GEO bulk
79 hrpA 7h -0.51 >More info -0.43 >More info Mock 7h hrpA Original data GEO bulk
80 Norflurazon -0.50 >More info -0.44 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
81 M6PR transgenic leaf 0mM NaCl -0.43 >More info -0.51 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
82 E.coli 0157 H7 7h -0.42 >More info -0.52 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
83 ALC Toc1 light-dark EtOH 0.56 >More info 0.37 >More info Col light-dark EtOH 2.5% ethanol Original data GEO bulk
84 Nicotinamide-65hr -0.56 >More info -0.37 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
85 GST 4 h (leaf) -0.41 >More info -0.52 >More info Mock 4 h (leaf) Original data Elicitor treatments
86 WT (Ler) CK25 0.34 >More info 0.59 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
87 seedling SPL13 -0.55 >More info -0.37 >More info seedling Col-0 Original data GEO bulk
88 Col-0 (t-zeatin 3 h) 0.52 >More info 0.40 >More info Col-0 Original data Cytokinin treatment of seedlings
89 pif4pif5 mut dark 0.30 >More info 0.62 >More info WT dark Original data GEO bulk
90 Col-0 9 hpi A. brassicicola -0.41 >More info -0.51 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
91 etiolated atbzip16 -0.37 >More info -0.54 >More info etiolated Ler etiolated aerial part of seedlings Original data GEO bulk
92 mutant acs2C (single mutant) -0.58 >More info -0.33 >More info col control (single mutant) Original data GEO bulk
93 AtLysM RLK1 mutant water 0.62 >More info 0.28 >More info WT water Original data GEO bulk
94 mbd6 mutant thaliana 10-day-old seedling -0.52 >More info -0.38 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
95 short 17-degree- 0.38 >More info 0.52 >More info control short Original data GEO bulk
96 root epidermis and lateral root cap -S 0.37 >More info 0.53 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
97 30m light 0.54 >More info 0.35 >More info before light whole seedlings Original data GEO bulk
98 tt4 -0.53 >More info -0.36 >More info Col-0 aerial part Original data
99 aba2 1% sucrose 12-day-old -0.53 >More info -0.36 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
100 pif3 Dark 1h 0.32 >More info 0.57 >More info WT Dark 1h etiolated seedling Original data GEO bulk
101 essp3/brm5 mutant 0.54 >More info 0.34 >More info WT (Pro-beta-CG;GUS) Original data GEO bulk
102 gai Control -0.56 >More info -0.32 >More info Laer Control leaf discs Original data GEO bulk
103 Col-0 DEX Shade -0.56 >More info -0.32 >More info Col-0 DEX WL seedlings Original data
104 Laer pretreat GA Flg22 2h -0.52 >More info -0.36 >More info Laer pretreat water control leaf discs Original data GEO bulk
105 leaf blade in FRD -0.57 >More info -0.31 >More info leaf blade in WL leaf blades Original data GEO bulk
106 Red Light 45min -0.19 >More info -0.69 >More info White Light 45min Original data Light treatments
107 seed germinating in countinuous light 24h SL 0.20 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
108 gun1-1 +lincomycin 0.33 >More info 0.53 >More info Col-0 +lincomycin Original data GEO bulk
109 EL (leaves 1-2) 14DAS 0.51 >More info 0.35 >More info Control for tissue data Original data GEO bulk
110 agb1 -ABA LF -0.15 >More info -0.71 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
111 det2 light-dark -0.51 >More info -0.34 >More info det2 light light-dark Original data GEO bulk
112 60m light 0.53 >More info 0.32 >More info before light whole seedlings Original data GEO bulk
113 oas-a1.1 root 0.30 >More info 0.55 >More info WT-Untreated Root Original data GEO bulk
114 sfr6 drought 0.31 >More info 0.53 >More info WT drought All aerial tissue Original data GEO bulk
115 root - 04% oxygen - 2h -0.15 >More info -0.69 >More info root - 21% oxygen - 2h Original data GEO bulk
116 ABA 1 h 0.51 >More info 0.32 >More info Mock 1 h Original data Basic hormone treatment of seedlings
117 MYB12OX/tt4 -0.52 >More info -0.31 >More info Col-0 aerial part Original data
118 WT cotyledons 0.50 >More info 0.33 >More info Control for tissue data cotyledons Original data
119 Seedling-HeatStressed TOTALmRNA -0.51 >More info -0.32 >More info Seedling-control TOTALmRNA seedling Original data
120 cov1 cov2 stem Top 0.51 >More info 0.31 >More info WT stem Top stem Top Original data GEO bulk
121 Mutant pif1-2 (Dark etiol) -0.25 >More info -0.57 >More info Col-0 (Dark etiol) Original data GEO bulk
122 pif1-2 dark -0.25 >More info -0.57 >More info Wt dark Original data GEO bulk
123 ABA control -0.10 >More info -0.71 >More info No ABA control Original data GEO bulk
124 toc1-1-85hr 0.51 >More info 0.29 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
125 WT roots - Fe -0.30 >More info -0.50 >More info WT roots + Fe Roots Original data GEO bulk
126 Aerobic e1 ate2 -0.26 >More info -0.54 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
127 sex1-3 -0.23 >More info -0.57 >More info Col-WT leaves Original data GEO bulk
128 2d dark-grown WT(Col-0)/1 hr red light 0.55 >More info 0.24 >More info 2d dark-grown WT seedling Original data GEO bulk
129 eds16 whole leaf 0h UI 0.28 >More info 0.51 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
130 GST-overexpression seedlings control -0.28 >More info -0.51 >More info WT seedlings control Seedlings Original data
131 pepr1-1 Pepr2-3 +Pep2 2h 0.50 >More info 0.28 >More info WT +Pep2 2h Pep2 Original data GEO bulk
132 fri-flc -0.26 >More info -0.52 >More info WT Original data GEO bulk
133 CabpBVR2 -0.27 >More info -0.50 >More info WT Original data GEO bulk
134 gapcp1gapcp2 0.52 >More info 0.23 >More info WT Original data GEO bulk
135 tcp14 -0.23 >More info -0.52 >More info WT inflorescences Original data GEO bulk
136 Col-0 2HS -0.18 >More info -0.56 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
137 4h decapitation 0.18 >More info 0.53 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
138 FarRed Light 45min -0.16 >More info -0.54 >More info White Light 45min Original data Light treatments
139 IAA7mII over-expressor IAA Treated 0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
140 35S::RSL4 -0.51 >More info -0.18 >More info Col-0 Control root Original data GEO bulk
141 GO5; 8h switch to ambient CO2 concentrations; -0.18 >More info -0.51 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
142 WT-Dry 0.57 >More info 0.11 >More info WT-CK dehydration treatment 1h Original data
143 root - 08% oxygen - 30min -0.13 >More info -0.54 >More info root - 21% oxygen - 30min Original data GEO bulk
144 line J2731-5 days control + 2 days salt s 0.07 >More info 0.60 >More info line J2731-7 days-control Original data
145 Shoot submergence 7h -0.66 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
146 CCA1-ox 6am non-polysomal 0.11 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
147 IAA 0.5 h -0.05 >More info -0.53 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
148 HairpinZ 4 h (leaf) -0.54 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
149 seedling 3h after HZE WT -0.58 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
150 ABA JA 24h -0.01 >More info -0.54 >More info EtOH 24h 24hr Original data GEO bulk
151 3x(m) -0.05 >More info -0.50 >More info 2x two week old seedlings Original data
152 pXVE:HA-EDM2-a untreated -0.50 >More info -0.02 >More info Col-0 untreated seedlings Original data GEO bulk
153 siliques AtHb1 control -0.00 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
154 Heat shock optimum -0.13 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
155 xyl-grown cell culture- 1h 1mM Glc 0.14 >More info -0.61 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
156 light 0.61 >More info -0.18 >More info dark light seedling Original data GEO bulk
157 Leafminer damaged seedlings -0.15 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
158 phyABDE Dark 0.18 >More info -0.58 >More info WT Dark Dark whole seedling Original data GEO bulk
159 Col BTH -0.43 >More info 0.67 >More info Col rosettes Original data GEO bulk
160 Laer pretreat GA Flg22 1h -0.48 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
161 Col0-PsmES4326-24hpi -0.42 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
162 phyABCDE Dark 0.34 >More info -0.52 >More info WT Dark Dark whole seedling Original data GEO bulk