4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on phyABCDE Dark
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List of experiments correlated with "phyABCDE Dark"  Help Download transcriptome of top 30
Score Experiment Correlation from
phyABCDE Dark		 Correlation to
phyABCDE Dark		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 phyABCDE Dark 1.00 >More info 1.00 >More info WT Dark Dark whole seedling Original data GEO bulk
2 phyABDE Dark 0.86 >More info 0.88 >More info WT Dark Dark whole seedling Original data GEO bulk
3 Ws seedlings 0.78 >More info 0.72 >More info ged1 seedlings Original data GEO bulk
4 ged1 seedlings -0.78 >More info -0.72 >More info Ws seedlings Original data GEO bulk
5 ahg1-1 0.66 >More info 0.83 >More info ABA control Original data GEO bulk
6 clf-28 swn-7 0.73 >More info 0.73 >More info Col whole plant Original data GEO bulk
7 gul2-1 mutant 0.77 >More info 0.67 >More info WT 7 day-old whole seedlings Original data
8 ABA control 0.67 >More info 0.75 >More info No ABA control Original data GEO bulk
9 GA4 3 h (ga1 seed) 0.75 >More info 0.67 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
10 etiolated atbzip16 0.71 >More info 0.71 >More info etiolated Ler etiolated aerial part of seedlings Original data GEO bulk
11 embryo ABA 0.72 >More info 0.68 >More info embryo-control ABA embryo Original data GEO bulk
12 piffq 2d WL 0.67 >More info 0.71 >More info WT 2d WL whole seedling Original data GEO bulk
13 phyABCDE Rc50 -0.71 >More info -0.67 >More info phyABCDE Dark red light whole seedling Original data GEO bulk
14 gul2-1 bri1-5 mutant 0.76 >More info 0.59 >More info WT 7 day-old whole seedlings Original data
15 Imbibed 24 h ABA 30uM (seed) 0.71 >More info 0.62 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
16 embryo paclobutrazol 0.72 >More info 0.61 >More info embryo-control paclobutrazol embryo Original data GEO bulk
17 60m light 0.62 >More info 0.59 >More info before light whole seedlings Original data GEO bulk
18 MPK6 ox Shoot Hypoxia -0.55 >More info -0.66 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
19 2d dark-grown pif1pif3pif4pif5 (pifq) mutant -0.69 >More info -0.51 >More info 2d dark-grown WT seedling Original data GEO bulk
20 estradiol induced LEC1 0.60 >More info 0.59 >More info control Original data GEO bulk
21 Estradiol4 days 0.60 >More info 0.59 >More info Col Original data GEO bulk
22 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		-0.66 >More info -0.48 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
23 rsa1 salt 12 h 0.59 >More info 0.55 >More info WT salt 12 h Salt with 120 mM NaCl for 24 h seedlings Original data GEO bulk
24 pab polysome 0.48 >More info 0.66 >More info WT polysome seedling shoot/aerial seedling Original data
25 dsr1 -0.44 >More info -0.69 >More info WT mock Whole seedling Original data GEO bulk
26 fri-flc 0.58 >More info 0.54 >More info WT Original data GEO bulk
27 abi3-6 16 DAF Seed -0.56 >More info -0.55 >More info WT (Col-0) 16 DAF Seed developing seeds dissected from sliques Original data
28 FHY3p dark+DEX -0.58 >More info -0.52 >More info FHY3p dark+mock Original data GEO bulk
29 red illumination +lincomycin 0.41 >More info 0.69 >More info red illumination -lincomycin Original data GEO bulk
30 ACN1-2 Sucrose -0.55 >More info -0.54 >More info Col-7 Sucrose Original data GEO bulk
31 mdh 0.50 >More info 0.58 >More info Col Original data GEO bulk
32 siliques AtHb1 control 0.56 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
33 piffq FR 1h 0.54 >More info 0.53 >More info WT FR 1h whole seedling Original data GEO bulk
34 24h SL WT -0.63 >More info -0.44 >More info 0 h WT seed Original data
35 24h SL Attim 17-1 1 -0.61 >More info -0.44 >More info 0 h Attim 17-1 1 seed Original data
36 csn4-1 dark 0.62 >More info 0.43 >More info WT light Original data GEO bulk
37 hsfa1 quadruple mutant 0.66 >More info 0.37 >More info WT (Col-0) whole seedling Original data GEO bulk
38 seed germinating in countinuous light 1 h SL 0.67 >More info 0.35 >More info Control for tissue data seed Original data GEO bulk
39 bbx24 in Simulated Shade -0.52 >More info -0.50 >More info WT in simulated shade shade seedling Original data
40 rosettes myoox drought 0.47 >More info 0.55 >More info rosettes myoox watered Original data GEO bulk
41 seed during stratification 48 h S 0.67 >More info 0.34 >More info Control for tissue data seed Original data GEO bulk
42 seed during stratification 1 h S 0.71 >More info 0.30 >More info Control for tissue data seed Original data GEO bulk
43 pif3 Dark 1h -0.54 >More info -0.46 >More info WT Dark 1h etiolated seedling Original data GEO bulk
44 seed during stratification 12 h S 0.71 >More info 0.29 >More info Control for tissue data seed Original data GEO bulk
45 eto1-4 +370 -0.69 >More info -0.31 >More info eto1-4 whole seedling Original data GEO bulk
46 endosperm paclobutrazol 0.65 >More info 0.34 >More info endosperm-control paclobutrazol endosperm Original data GEO bulk
47 dry seed 0 h 0.70 >More info 0.29 >More info Control for tissue data seed Original data GEO bulk
48 piffq 3d WL 0.53 >More info 0.46 >More info WT 3d WL whole seedling Original data GEO bulk
49 35S-MIF1 light grown 0.38 >More info 0.61 >More info Light-grown WT control Original data GEO bulk
50 ARF10 -0.69 >More info -0.29 >More info Col-0 Original data GEO bulk
51 eto1-4 + AVG -0.61 >More info -0.37 >More info eto1-4 whole seedling Original data GEO bulk
52 Heat 0.51 >More info 0.47 >More info Control 90 minutes at 38°C. Original data GEO bulk
53 seed freshly harvested H 0.70 >More info 0.28 >More info Control for tissue data seed Original data GEO bulk
54 FarRed Light 45min -0.15 >More info -0.81 >More info White Light 45min Original data Light treatments
55 ACN1-2 -0.41 >More info -0.55 >More info col-7 Original data GEO bulk
56 35S-MIF1 dark grown 0.64 >More info 0.31 >More info Dark-grown WT control Original data GEO bulk
57 csn5 (csn5a-2 csn5b) light 0.54 >More info 0.41 >More info WT light Original data GEO bulk
58 Col-0 red light -0.62 >More info -0.32 >More info Col-0 dark Original data GEO bulk
59 Ws HS 0.38 >More info 0.55 >More info Ws control heat shocked seedling Original data GEO bulk
60 seed germinating in countinuous light 6 h SL 0.60 >More info 0.33 >More info Control for tissue data seed Original data GEO bulk
61 eif3h polysome 0.69 >More info 0.24 >More info WT polysome Original data GEO bulk
62 eto1-4 0.74 >More info 0.19 >More info Col-0 whole seedling Original data GEO bulk
63 ABI3GR +DEX +CHX 0.35 >More info 0.58 >More info ABI3GR -DEX +CHX DEX CHX root/protoplasts Original data GEO bulk
64 Col-0 HS 0.39 >More info 0.53 >More info Col-0 control heat shocked seedling Original data GEO bulk
65 WT (Col-0) heat shock 0.39 >More info 0.53 >More info WT (Col-0) whole seedling Original data GEO bulk
66 eif3h non-polysome 0.66 >More info 0.25 >More info WT non-polysome Original data GEO bulk
67 Col-0 37C 0.40 >More info 0.51 >More info Col-0 22C Original data GEO bulk
68 dark-hs 0.39 >More info 0.52 >More info dark-control seedling Original data
69 WT Seedling BL+ABA 0.50 >More info 0.41 >More info WT Seedling BL Original data GEO bulk
70 hsfa1 quadruple mutant heat shock 0.57 >More info 0.34 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
71 vtc2 day 7 induction -0.56 >More info -0.34 >More info WT day 7 induction day 7 induction of somatic embryogenesis Original data GEO bulk
72 WT Red light 18h -0.63 >More info -0.26 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
73 Col dryseed 0.67 >More info 0.22 >More info Control for tissue data dry seeds Original data
74 15m light 0.52 >More info 0.37 >More info before light whole seedlings Original data GEO bulk
75 eto1-4 +303 -0.65 >More info -0.24 >More info eto1-4 whole seedling Original data GEO bulk
76 phyABDE 4-day dark- 2 hours Rc50 0.71 >More info 0.18 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
77 cca1-lhy 60m light -0.62 >More info -0.26 >More info 60m light whole seedlings Original data GEO bulk
78 piffq FR 24h 0.52 >More info 0.36 >More info WT FR 24h whole seedling Original data GEO bulk
79 35S::Zat12+H2O2 0.52 >More info 0.36 >More info WT+H2O2 H2O2 Original data GEO bulk
80 pif3 Dark 0h -0.38 >More info -0.50 >More info WT Dark 0h etiolated seedling Original data GEO bulk
81 pil5 dark -0.56 >More info -0.31 >More info Col-0 dark Original data GEO bulk
82 5-Triiodobenzoic acid3 h 0.26 >More info 0.60 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
83 Red/FR Light45min 0.10 >More info 0.76 >More info FarRed Light 45min Original data Light treatments
84 Laer pretreat GA Flg22 1h 0.15 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
85 bri1-116 0.12 >More info 0.73 >More info Col seedling Original data GEO bulk
86 Seeds stage8 w/o siliques 0.65 >More info 0.19 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
87 eto1-4 +393 -0.74 >More info -0.10 >More info eto1-4 whole seedling Original data GEO bulk
88 C24-30min IAA -0.54 >More info -0.29 >More info C24-0h IAA whole plant Original data GEO bulk
89 seed germinating in countinuous light 24h SL 0.15 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
90 Col0-PsmES4326-24hpi 0.21 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
91 lec1-1 Post-Mature Green Seed 0.64 >More info 0.17 >More info Control for tissue data Original data GEO bulk
92 pkl Mutant Uniconazole 0.55 >More info 0.25 >More info pkl Mutant mock Original data GEO bulk
93 OE-HRA1 2HS  0.51 >More info 0.27 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
94 Light 3day wt -0.27 >More info -0.51 >More info 0h wt Original data
95 oas-a1.1 root 0.18 >More info 0.60 >More info WT-Untreated Root Original data GEO bulk
96 Transgenic LEC2GR Seedling 4h Dex 0.26 >More info 0.51 >More info WT WS-O Seedling 4h Dex Original data GEO bulk
97 Imidazolinone EC50 0.22 >More info 0.55 >More info Carrier (Imidazolinone) Original data GEO bulk
98 IAA7mII over-expressor IAA Treated 0.08 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
99 eif3h 0.66 >More info 0.10 >More info WT Original data GEO bulk
100 seedling h S Exp 0.11 >More info 0.65 >More info seedling -S Exp seedling Original data
101 shoot control pSultr2:2 -0.54 >More info -0.21 >More info shoot control total Original data GEO bulk
102 6h +Pi -0.52 >More info -0.23 >More info 6h -Pi root Original data GEO bulk
103 35S::Zat12 0.53 >More info 0.21 >More info WT Original data GEO bulk
104 lec1-1 Mature Green Seed 0.56 >More info 0.17 >More info Control for tissue data Original data GEO bulk
105 20d after anthesis 0.56 >More info 0.15 >More info 10d after anthesis senescing pod tissues of 20 days after anthesis Original data GEO bulk
106 Stem tissue 2 days NAA 0.58 >More info 0.13 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
107 Blue Light 4 h 0.16 >More info 0.54 >More info White Light 4 h Original data Light treatments
108 sta1 0.14 >More info 0.56 >More info WT Original data GEO bulk
109 4C 24h 0.18 >More info 0.52 >More info 4C 0h Original data GEO bulk
110 TNT-seedlings 0.13 >More info 0.56 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
111 Col BTH 0.02 >More info 0.67 >More info Col rosettes Original data GEO bulk
112 ahg3-1 0.57 >More info 0.12 >More info ABA control Original data GEO bulk
113 brat1nrpe1 0.07 >More info 0.62 >More info WT Original data
114 NJ15 0.06 >More info 0.63 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
115 Ibuprofen 3 h 0.17 >More info 0.51 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
116 cca1-lhy 15m light -0.51 >More info -0.16 >More info 15m light whole seedlings Original data GEO bulk
117 Leafminer damaged seedlings 0.11 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
118 short 12-degree- 0.08 >More info 0.59 >More info control short Original data GEO bulk
119 MG132 3 h 0.10 >More info 0.56 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
120 9m.KCl 0.15 >More info 0.51 >More info To. KCl 14 day old Roots Original data GEO bulk
121 short 14-degree- 0.15 >More info 0.50 >More info control short Original data GEO bulk
122 COL-0-Fe--shoot 0.13 >More info 0.52 >More info COL-0-Ctrl--shoot shoot Original data
123 xyl-grown cell culture- 1h 1mM Suc 0.07 >More info 0.56 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
124 atm3 -0.06 >More info -0.56 >More info Col0 whole plant Original data GEO bulk
125 Heat shock optimum -0.03 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
126 Red Light 45min -0.07 >More info -0.53 >More info White Light 45min Original data Light treatments
127 rosette Dark Wounded 0.07 >More info 0.53 >More info rosette Dark Control Original data GEO bulk
128 sfr3 control 0.10 >More info 0.50 >More info WT control All aerial tissue Original data GEO bulk
129 JMJ24 knockout 0.52 >More info 0.06 >More info WT Original data GEO bulk
130 short 17-degree- 0.04 >More info 0.53 >More info control short Original data GEO bulk
131 Apex mir-3TCP 14DAS -0.00 >More info 0.57 >More info Apex Col 14DAS Original data GEO bulk
132 35S::PI ap3-3 35S::AP-GR +DEX -0.04 >More info 0.61 >More info 0hr DEX Original data GEO bulk
133 irradiated leaf (WT 5d) 0.04 >More info 0.52 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
134 endosperm ABA 0.69 >More info -0.13 >More info endosperm-control ABA endosperm Original data GEO bulk
135 Imbibed 24 h ABA 3uM (seed) 0.58 >More info -0.05 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
136 CCA1-ox 6am non-polysomal -0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
137 Ba1 UV -0.50 >More info 0.04 >More info Ba1 mock UV seedling Original data
138 Shoot apex inflorescence (after bolting) -0.20 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
139 ptpks2 -0.13 >More info 0.57 >More info Col-WT leaves Original data GEO bulk
140 seedling 24h after Gamma WT -0.10 >More info 0.52 >More info seedling day 2 unirradiated WT 24h Original data
141 phyABDE Rc50 -0.52 >More info 0.34 >More info phyABDE Dark red light whole seedling Original data GEO bulk