4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on ged1 seedlings
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List of experiments correlated with "ged1 seedlings"  Help Download transcriptome of top 30
Score Experiment Correlation from
ged1 seedlings		 Correlation to
ged1 seedlings		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 ged1 seedlings 1.00 >More info 1.00 >More info Ws seedlings Original data GEO bulk
2 Ws seedlings -1.00 >More info -1.00 >More info ged1 seedlings Original data GEO bulk
3 MPK6 ox Shoot Hypoxia 0.70 >More info 0.91 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
4 phyABCDE Dark -0.72 >More info -0.78 >More info WT Dark Dark whole seedling Original data GEO bulk
5 ABA control -0.64 >More info -0.82 >More info No ABA control Original data GEO bulk
6 piffq 2d WL -0.66 >More info -0.77 >More info WT 2d WL whole seedling Original data GEO bulk
7 phyABDE Dark -0.66 >More info -0.73 >More info WT Dark Dark whole seedling Original data GEO bulk
8 mdh -0.64 >More info -0.74 >More info Col Original data GEO bulk
9 MPK6 ox Root Hypoxia 0.62 >More info 0.76 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
10 clf-28 swn-7 -0.67 >More info -0.70 >More info Col whole plant Original data GEO bulk
11 gul2-1 mutant -0.69 >More info -0.64 >More info WT 7 day-old whole seedlings Original data
12 GA4 3 h (ga1 seed) -0.70 >More info -0.60 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
13 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.71 >More info 0.59 >More info 2d dark-grown WT seedling Original data GEO bulk
14 eto1-4 +393 0.72 >More info 0.57 >More info eto1-4 whole seedling Original data GEO bulk
15 ahg1-1 -0.61 >More info -0.67 >More info ABA control Original data GEO bulk
16 gul2-1 bri1-5 mutant -0.67 >More info -0.58 >More info WT 7 day-old whole seedlings Original data
17 etiolated atbzip16 -0.62 >More info -0.61 >More info etiolated Ler etiolated aerial part of seedlings Original data GEO bulk
18 pab polysome -0.50 >More info -0.72 >More info WT polysome seedling shoot/aerial seedling Original data
19 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.69 >More info 0.53 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
20 Imbibed 24 h ABA 30uM (seed) -0.60 >More info -0.62 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
21 fri-flc -0.58 >More info -0.59 >More info WT Original data GEO bulk
22 rsa1 salt 12 h -0.55 >More info -0.62 >More info WT salt 12 h Salt with 120 mM NaCl for 24 h seedlings Original data GEO bulk
23 hsfa1 quadruple mutant heat shock -0.60 >More info -0.57 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
24 ACN1-2 0.40 >More info 0.76 >More info col-7 Original data GEO bulk
25 embryo ABA -0.63 >More info -0.52 >More info embryo-control ABA embryo Original data GEO bulk
26 estradiol induced LEC1 -0.59 >More info -0.54 >More info control Original data GEO bulk
27 Estradiol4 days -0.59 >More info -0.54 >More info Col Original data GEO bulk
28 hsfa1 quadruple mutant -0.63 >More info -0.50 >More info WT (Col-0) whole seedling Original data GEO bulk
29 eto1-4 +370 0.69 >More info 0.44 >More info eto1-4 whole seedling Original data GEO bulk
30 piffq FR 24h -0.51 >More info -0.60 >More info WT FR 24h whole seedling Original data GEO bulk
31 piffq FR 1h -0.53 >More info -0.56 >More info WT FR 1h whole seedling Original data GEO bulk
32 WT Shoot Hypoxia 0.45 >More info 0.64 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
33 OE-HRA1 2HS  -0.62 >More info -0.47 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
34 WT Red light 18h 0.56 >More info 0.51 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
35 Aerobic prt6 0.40 >More info 0.67 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
36 eto1-4 + AVG 0.60 >More info 0.47 >More info eto1-4 whole seedling Original data GEO bulk
37 eto1-4 +303 0.65 >More info 0.41 >More info eto1-4 whole seedling Original data GEO bulk
38 eto1-4 -0.64 >More info -0.40 >More info Col-0 whole seedling Original data GEO bulk
39 Aerobic e1 ate2 0.31 >More info 0.73 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
40 ACN1-2 Sucrose 0.47 >More info 0.56 >More info Col-7 Sucrose Original data GEO bulk
41 embryo paclobutrazol -0.60 >More info -0.42 >More info embryo-control paclobutrazol embryo Original data GEO bulk
42 shoot hypoxia total 0.45 >More info 0.56 >More info shoot control total Original data GEO bulk
43 35S-MIF1 dark grown -0.59 >More info -0.41 >More info Dark-grown WT control Original data GEO bulk
44 vtc2 day 7 induction 0.58 >More info 0.42 >More info WT day 7 induction day 7 induction of somatic embryogenesis Original data GEO bulk
45 root - 08% oxygen - 30min 0.32 >More info 0.68 >More info root - 21% oxygen - 30min Original data GEO bulk
46 csn4-1 dark -0.59 >More info -0.40 >More info WT light Original data GEO bulk
47 phyABCDE Rc50 0.48 >More info 0.51 >More info phyABCDE Dark red light whole seedling Original data GEO bulk
48 Hypoxic e1 ate 0.43 >More info 0.55 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
49 WT +Pep2 10h -0.46 >More info -0.51 >More info WT untreated Pep2 Original data GEO bulk
50 Col-7 Sucrose -0.38 >More info -0.59 >More info col-7 Original data GEO bulk
51 phyABDE 4-day dark- 2 hours Rc50 -0.61 >More info -0.35 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
52 35S::Zat12+H2O2 -0.54 >More info -0.41 >More info WT+H2O2 H2O2 Original data GEO bulk
53 root - 04% oxygen - 2h 0.20 >More info 0.75 >More info root - 21% oxygen - 2h Original data GEO bulk
54 WT +elf18 10h -0.35 >More info -0.59 >More info WT untreated elf18 Original data GEO bulk
55 35S::Zat12 -0.53 >More info -0.40 >More info WT Original data GEO bulk
56 WT Root Hypoxia 0.36 >More info 0.57 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
57 WT Seedling BL+ABA -0.52 >More info -0.40 >More info WT Seedling BL Original data GEO bulk
58 Shoot apex inflorescence (after bolting) 0.26 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
59 pif3 Dark 0h 0.39 >More info 0.52 >More info WT Dark 0h etiolated seedling Original data GEO bulk
60 WT +elf18 2h -0.38 >More info -0.53 >More info WT untreated elf18 Original data GEO bulk
61 Chitosan 3h Treatment -0.50 >More info -0.40 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
62 35S-MIF1 light grown -0.33 >More info -0.57 >More info Light-grown WT control Original data GEO bulk
63 20d after anthesis -0.56 >More info -0.33 >More info 10d after anthesis senescing pod tissues of 20 days after anthesis Original data GEO bulk
64 ABI3GR +DEX +CHX -0.33 >More info -0.55 >More info ABI3GR -DEX +CHX DEX CHX root/protoplasts Original data GEO bulk
65 shoot control pGL2 0.52 >More info 0.36 >More info shoot control total Original data GEO bulk
66 root cap pGL2 8h BL -0.37 >More info -0.51 >More info root cap pGL2 0h BL brassinosteroid root Original data
67 B.cinerea 18 h infection -0.19 >More info -0.69 >More info Mock 18 h Original data Botrytis cinerea infection
68 Botrytis cinerea 18h -0.19 >More info -0.69 >More info control 18h Original data GEO bulk
69 ARF10 0.62 >More info 0.25 >More info Col-0 Original data GEO bulk
70 root - 08% oxygen - 2h 0.14 >More info 0.72 >More info root - 21% oxygen - 2h Original data GEO bulk
71 shoot control pSultr2:2 0.52 >More info 0.33 >More info shoot control total Original data GEO bulk
72 eif3h polysome -0.66 >More info -0.19 >More info WT polysome Original data GEO bulk
73 pab nonpolysome -0.31 >More info -0.54 >More info WT nonpolysome seedling shoot/aerial seedling Original data
74 eif3h non-polysome -0.62 >More info -0.23 >More info WT non-polysome Original data GEO bulk
75 cpr5npr1svi1 -0.25 >More info -0.60 >More info WT(COL) Original data GEO bulk
76 eif3h -0.63 >More info -0.19 >More info WT Original data GEO bulk
77 pkl Mutant Uniconazole -0.53 >More info -0.29 >More info pkl Mutant mock Original data GEO bulk
78 Phaseolicola 2 h (leaf) -0.16 >More info -0.65 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
79 toc1-1-49hr -0.26 >More info -0.55 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
80 Root -Cs -0.30 >More info -0.50 >More info Control-root Original data GEO bulk
81 seedling 12h after Gamma atm-1 -0.20 >More info -0.60 >More info seedling day 1 unirradiated atm-1 12h Original data
82 sng1 0.18 >More info 0.61 >More info WT aerial region Original data GEO bulk
83 seed freshly harvested H -0.57 >More info -0.22 >More info Control for tissue data seed Original data GEO bulk
84 PNO8 3 h -0.06 >More info -0.72 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
85 HARAP aerobic 0.17 >More info 0.61 >More info WT aerobic aerobic Original data GEO bulk
86 dry seed 0 h -0.57 >More info -0.21 >More info Control for tissue data seed Original data GEO bulk
87 seed during stratification 1 h S -0.57 >More info -0.20 >More info Control for tissue data seed Original data GEO bulk
88 AgNO3 3 h -0.21 >More info -0.56 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
89 root endodermis and quiescent center 40 mM NaCl -0.27 >More info -0.50 >More info root endodermis and quiescent center Original data GEO bulk
90 seed during stratification 48 h S -0.51 >More info -0.25 >More info Control for tissue data seed Original data GEO bulk
91 endosperm ABA -0.63 >More info -0.13 >More info endosperm-control ABA endosperm Original data GEO bulk
92 08h Col-0 -0.24 >More info -0.52 >More info 00h Col-0 Original data GEO bulk
93 oas-a1.1 root -0.25 >More info -0.50 >More info WT-Untreated Root Original data GEO bulk
94 Fei-0-30min IAA -0.50 >More info -0.24 >More info Fei-0-0h IAA whole plant Original data GEO bulk
95 6h +Pi 0.52 >More info 0.22 >More info 6h -Pi root Original data GEO bulk
96 16h Col-0 -0.15 >More info -0.59 >More info 00h Col-0 Original data GEO bulk
97 Cor hrpS 10h -0.21 >More info -0.53 >More info Mock 10h Cor hrpS Original data GEO bulk
98 gun1gun5 Norflurazon 0.22 >More info 0.52 >More info Norflurazon a herbicide (Norflurazon) seedling Original data GEO bulk
99 gun1gun5 far-red pretreated 0.19 >More info 0.55 >More info WT far-red pretreated Original data GEO bulk
100 PAHs stress -0.12 >More info -0.61 >More info exp control phenanthrene whole plants Original data GEO bulk
101 Whole root - S 3H -0.15 >More info -0.58 >More info Whole root - S 0H Original data GEO bulk
102 cpr5scv1 -0.18 >More info -0.55 >More info WT(COL) Original data GEO bulk
103 cpr5npr1 -0.16 >More info -0.57 >More info WT(COL) Original data GEO bulk
104 endosperm paclobutrazol -0.54 >More info -0.18 >More info endosperm-control paclobutrazol endosperm Original data GEO bulk
105 lec1-1 Post-Mature Green Seed -0.52 >More info -0.20 >More info Control for tissue data Original data GEO bulk
106 seed during stratification 12 h S -0.52 >More info -0.20 >More info Control for tissue data seed Original data GEO bulk
107 ahg3-1 -0.54 >More info -0.18 >More info ABA control Original data GEO bulk
108 Col dryseed -0.53 >More info -0.19 >More info Control for tissue data dry seeds Original data
109 6-trichlorophenoxyacetic acid 3 h -0.19 >More info -0.53 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
110 pil5 dark 0.53 >More info 0.18 >More info Col-0 dark Original data GEO bulk
111 P.p 30hai -0.18 >More info -0.53 >More info At-Control roots Original data GEO bulk
112 20h Col-0 -0.14 >More info -0.57 >More info 00h Col-0 Original data GEO bulk
113 Col whole leaf 7dpi -0.18 >More info -0.52 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
114 bri1-116 -0.03 >More info 0.73 >More info Col seedling Original data GEO bulk
115 Cocultivation 8 hrs leaf 0.18 >More info 0.52 >More info Mock cocultivation 8 hrs leaf Leaf Original data
116 bbx24 in Simulated Shade 0.56 >More info 0.13 >More info WT in simulated shade shade seedling Original data
117 P.p 10.5hai -0.15 >More info -0.54 >More info At-Control roots Original data GEO bulk
118 P.p 2.5hai -0.06 >More info -0.63 >More info At-Control roots Original data GEO bulk
119 Heat shock optimum 0.03 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
120 Shoot -Cs -0.05 >More info -0.63 >More info Control-shoot Original data GEO bulk
121 Col-0 35S:MBS1 HL 3h 0.15 >More info 0.53 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
122 seedlings protease IV -0.15 >More info -0.53 >More info seedlings nontreated control whole seedling Original data
123 FLIGHT TAGESB plate6 ROOTS -0.50 >More info -0.17 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
124 At1g54160 ox -0.17 >More info -0.50 >More info Col-0 Original data GEO bulk
125 Col-0 overexpressing At1g54160 control -0.17 >More info -0.50 >More info WT no treatement Original data GEO bulk
126 pGL1::GL1-GR Dex 24hours 0.15 >More info 0.52 >More info pGL1::GL1-GR mock 24hours Original data GEO bulk
127 Botrytis cinerea 48h -0.14 >More info -0.53 >More info control 48h Original data GEO bulk
128 npr1-3 DCA 48h -0.09 >More info -0.58 >More info npr1-3 MOCK 48h Original data GEO bulk
129 aerial organ callus inducing medium 12 h -0.07 >More info -0.60 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
130 12h Col-0 -0.15 >More info -0.51 >More info 00h Col-0 Original data GEO bulk
131 Col BTH -0.01 >More info 0.67 >More info Col rosettes Original data GEO bulk
132 COL-0-Fe--shoot 0.00 >More info -0.66 >More info COL-0-Ctrl--shoot shoot Original data
133 Col-0 V. longisporum-inoculated 48 hpi -0.12 >More info -0.54 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
134 col-5 hrpA 12h -0.11 >More info -0.54 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
135 IAA7mII over-expressor IAA Treated -0.04 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
136 Mutant cry1 -0.53 >More info -0.11 >More info Col-0 Original data GEO bulk
137 cry1 low light -0.53 >More info -0.11 >More info Col-O low light Original data GEO bulk
138 root longitudinal zone-2 -Fe -0.08 >More info -0.56 >More info root longitudinal zone-2 standard Original data GEO bulk
139 control leaf (cmt 5d) -0.03 >More info -0.61 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
140 root - 04% oxygen - 48h 0.07 >More info 0.56 >More info root - 21% oxygen - 48h Original data GEO bulk
141 sfr3 control -0.12 >More info -0.51 >More info WT control All aerial tissue Original data GEO bulk
142 Glyphosate EC50 -0.13 >More info -0.50 >More info Carrier (Glyphosate) Original data GEO bulk
143 seedlings by volatiles from leafminer damaged
Lima bean 48h		 -0.13 >More info -0.50 >More info seedlings by volatiles from healthy Lima bean 48h leaves Original data GEO bulk
144 root - 01% oxygen - 2h -0.01 >More info 0.63 >More info root - 21% oxygen - 2h Original data GEO bulk
145 Constans-mutant -0.12 >More info -0.50 >More info Col control above-ground whole plant Original data GEO bulk
146 SA 24h -0.10 >More info -0.51 >More info EtOH 24h 24hr Original data GEO bulk
147 ein2-1 9 hpi A. brassicicola -0.11 >More info -0.50 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
148 bZIP1ko mutant N+Light- -0.09 >More info -0.51 >More info WT-sib N+Light- whole plant Original data GEO bulk
149 Col-0 red light 0.52 >More info 0.07 >More info Col-0 dark Original data GEO bulk
150 35S::PI ap3-3 35S::AP-GR +DEX -0.04 >More info -0.55 >More info 0hr DEX Original data GEO bulk
151 seedling 12h after HZE atm-1 -0.07 >More info -0.51 >More info seedling day 1 unirradiated atm-1 12h Original data
152 CCA1-ox 6am non-polysomal 0.07 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
153 Stem tissue 2 days NAA -0.55 >More info -0.02 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
154 agb1 -ABA LF 0.06 >More info -0.63 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
155 estradiole-induced ANAC059 -0.04 >More info -0.52 >More info transgenic (empty vector inducible system) Original data GEO bulk
156 seed germinating in countinuous light 24h SL -0.11 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
157 S14-150 -0.02 >More info -0.52 >More info wt Original data GEO bulk
158 Imbibed 24 h ABA 3uM (seed) -0.52 >More info -0.01 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
159 long 17-degree- -0.00 >More info -0.52 >More info control long Original data GEO bulk
160 Col0-PsmES4326-24hpi -0.11 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
161 Light 3day hml 0.11 >More info -0.60 >More info 0h hml Original data
162 pip3 At2g19270 TDNA 9 -0.02 >More info 0.50 >More info Col-0 whole plant Original data GEO bulk
163 seedling 1.5h after Gamma atm-1 0.05 >More info -0.52 >More info seedling day 1 unirradiated atm-1 1.5h Original data
164 Laer pretreat GA Flg22 1h -0.24 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
165 WT 2-4h Xanthomonas 0.10 >More info -0.56 >More info WT T0 Original data GEO bulk
166 vte2-1 3d vernalization 0.06 >More info -0.51 >More info WT 3d vernalization Original data GEO bulk
167 Split KNO3 roots - 8hours -0.15 >More info 0.59 >More info Split KCl roots - 8hours 5mM KNO3 on ONE side for 8 hours roots Original data GEO bulk
168 CeO2 germinant -0.12 >More info 0.55 >More info Millipore Water germinant CeO2 seedling Original data
169 gun5 control 0.51 >More info -0.10 >More info Col-0 control Original data GEO bulk
170 LEAFY-GR DEX -0.15 >More info 0.53 >More info Mock Dexamethasone seedlings Original data GEO bulk
171 Leafminer damaged seedlings -0.22 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
172 root longitudinal zone-3 -Fe 0.24 >More info -0.53 >More info root longitudinal zone-3 standard Original data GEO bulk
173 siliques AtHb1 control -0.44 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk